Silkworm Genome Informatics Database

Gene

KWMTBOMO11860

Pre Gene Modal

BGIBMGA004420

Annotation

caspase-4_[Bombyx_mori]

Location

Bomo_Chr20(-):2279312-2291012 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.666

CDS

ATGGACAGTGACGAAAATCAATTACAAACGAATTCTAAAACAAAGAACAAGCGTAAGAAATATTTGAAACGCAGCAAAGAGGTTGAATATGACTTGAAAGATGCTGTAGAAGCATTCGATGAAGCGTTGGAATTGACTGAAAACGAACAAGACAATGTAACATCCGATGAAGCTGTTGAAAGCGTGTTTGTCGACGCTATCATGAAAACACCACCAAAATTGCTTCACCCACAAAAAGTTATCTATCCAGAACCTGTCGAAATACCACCTGTAGAGACAAAAAACATCGAAGAGAAAAGGGTATCAGATTCAAAAATCACAGATCAAGTCGAGGAGATAGAAAGTGAAAGTAAATTTTACAATAATAGAGCGTTAACGAAATACGCTACGACATACGAATTAGAAAAATTTGAGAAGAACGCTTTGTTAATATTTAATCAAGAAAATATTTATGGTTATAGTCCTAGGAAAGGTACGGAGAAGGACGTTGAATCTTTGACAGTGACATTTCAAAAGTTTGGCTTTGAAGTCGTAGAACATAAGGACCTAACTAAAGACGAAGTTTTGAACGAAATTAAAGAATTCTCATCTAGAGATCTCAGAGACTACGGCTGCATCGGGATAGCAGTACTTACGCACGGATCGAGCGACGGTATGCTGAGAGCTAAGGACATGCAGTATAGCGAAAAAGAGATTTTACGGCATTTTAAAGTACACGACAAACCATTCTTGGTCACAAAACCGAAGTTCTTGATAATACAGGCATGCAGGGGCAAAGAGGAGATGCAGGGTGCGGCAGTTTTCAGGTCGGGAAAGCTAAGGAAGGACTTGGACGAAGACTTGGAGCCTTACGTGTTGCCAATTGAAGCGGATATGCTGATATTGCACAGTTCTTACTCCGGGAAACCATCACACAGGCACGAAGTCGACGGATCATGGTTCATCCAATCATTGTGCAGTAAGATAAACGAATTATCGGAAACACACGATTTAGAGTCTATAATAACCGAAGTCAAACGAGAAGTCGCCATAGATAGATACCACAAAGAGTTTAACAGGAGAACATCGGAATACGACATTAACAAACAGATGCCGGTTATTACTTCAACGCTCATAAGAAAGTTGTATCTGAGGAAATACATGGATCCGCCAGTAAGCCAATGCTTGATCAAACCGACGCCGGCGATAAGCGAGTCATCTAAGAATGAGGTGTTAGACGAATCCACTCCGGATACAAATTTATTGGTCCAATGCGGACAATGTACTTGCTATTTAGATCATTTTCTTTACATGAAAAGCTGTTTAGAGTATTATTTAGAAGTACGACCGGACGACGAAACCGCTCTGAATTTCTTGAAAGTTGCGAATACGTTCCAGCATTTAGACGAATTTAATTCGTCAAAGGAACAGATGGTGACGGCCATCAGTAAATATCTAATGAAGAACGCCGAAGGGATGCATTTTTATAAATATTTGTACTTTTATAAAGATTAA

Protein

MDSDENQLQTNSKTKNKRKKYLKRSKEVEYDLKDAVEAFDEALELTENEQDNVTSDEAVESVFVDAIMKTPPKLLHPQKVIYPEPVEIPPVETKNIEEKRVSDSKITDQVEEIESESKFYNNRALTKYATTYELEKFEKNALLIFNQENIYGYSPRKGTEKDVESLTVTFQKFGFEVVEHKDLTKDEVLNEIKEFSSRDLRDYGCIGIAVLTHGSSDGMLRAKDMQYSEKEILRHFKVHDKPFLVTKPKFLIIQACRGKEEMQGAAVFRSGKLRKDLDEDLEPYVLPIEADMLILHSSYSGKPSHRHEVDGSWFIQSLCSKINELSETHDLESIITEVKREVAIDRYHKEFNRRTSEYDINKQMPVITSTLIRKLYLRKYMDPPVSQCLIKPTPAISESSKNEVLDESTPDTNLLVQCGQCTCYLDHFLYMKSCLEYYLEVRPDDETALNFLKVANTFQHLDEFNSSKEQMVTAISKYLMKNAEGMHFYKYLYFYKD

Similarity

Belongs to the peptidase C14A family.

Uniprot

G0Y251 G0XQG7 A0A2W1BWQ4 G0XQG8 A0A0N1IHF3 A0A194Q5B4 + More
A0A2H1VNA6 G0XQG5 G0XQG4 F6K5S0 F6K5R9 A0A1E1WKK4 A0A3S2NBU2 A0A1E1VXS7 M4XZ91 A0A3S2LMJ2 F6K5S1

Pubmed

21740565 28756777 26354079

EMBL

HQ456874 AEK71902.1 HQ328971 AEK20828.1 KZ149924 PZC77627.1 + More
HQ328972 AEK20829.1 KQ460547 KPJ14043.1 KQ459460 KPJ00733.1 ODYU01003468 SOQ42288.1 HQ328969 AEK20826.1 HQ328968 AEK20825.1 HM234677 AEF30495.1 HM234676 AEF30494.1 GDQN01003658 JAT87396.1 RSAL01000114 RVE46936.1 GDQN01011537 JAT79517.1 KC417310 AGI36554.1 RSAL01002435 RVE40488.1 HM234678 AEF30496.1

Proteomes

UP000053240 UP000053268 UP000283053

PRIDE

G0Y251

Interpro

IPR029030   Caspase-like_dom_sf        + More
IPR001309   Pept_C14_p20
IPR015917   Pept_C14A
IPR002138   Pept_C14_p10
IPR033139   Caspase_cys_AS
IPR002398   Pept_C14

SUPFAM

SSF52129 SSF52129

ProteinModelPortal

G0Y251 G0XQG7 A0A2W1BWQ4 G0XQG8 A0A0N1IHF3 A0A194Q5B4 + More
A0A2H1VNA6 G0XQG5 G0XQG4 F6K5S0 F6K5R9 A0A1E1WKK4 A0A3S2NBU2 A0A1E1VXS7 M4XZ91 A0A3S2LMJ2 F6K5S1

PDB

3SIR E-value=1.4989e-30, Score=332

KEGG

100862780 no KO assigned | (RefSeq) Casp-4, caspase-X; caspase-4

GO

GO:0097200 GO:0006915 GO:0004197 GO:0006508 GO:0008234 GO:0004890 GO:0005216 GO:0043564 GO:0006418 GO:0003824

PANTHER

PTHR10454

Length:

497

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00231

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00547

outside

1 - 497

Pi

42.290768

Theta

46.566533

Tajima's D

-1.04128

CLR

12.530295

CSRT

0.130993450327484

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics