SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11852
Annotation
neuropeptide_receptor_A16_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.812 PlasmaMembrane   Reliability : 2.218
 

Sequence

CDS
ATGCCACAACTCCGTTCTAGAAGGAAGGCAGCTAAAATGTTGGTGTCAGTTGTGATAATGTTCGCCGTATGCTATTTCCCGGTTCACCTGCTATCTGTGATGCGCTACACAATCGATATGGGACAAACGGAATTCATAACCATTTGGGCGCTTGTCTCGCACGTCATGTGCTACGCGAATTCCGCCATAAATCCATTGATCTACAATCTCATGAGTGATAAATTTCGTCGCGAATTCCGCAGAGCGTTCTGCTGCTCTACCAGTTCGGGACGGCAGGATTTCACGTCCATGTCCCGTGTCACCACGAAGAAGGACTCGTCCATAATGGCATCCTTCAAGCCAGGACATACCAGCACGACATTCGTACATAACAATAAAAACGGACATATGACTTAA
Protein
MPQLRSRRKAAKMLVSVVIMFAVCYFPVHLLSVMRYTIDMGQTEFITIWALVSHVMCYANSAINPLIYNLMSDKFRREFRRAFCCSTSSGRQDFTSMSRVTTKKDSSIMASFKPGHTSTTFVHNNKNGHMT

Summary

Similarity
Belongs to the G-protein coupled receptor 1 family.
Pfam
PF00001   7tm_1
Interpro
IPR000611   NPY_rcpt        + More
IPR000276   GPCR_Rhodpsn       
IPR017452   GPCR_Rhodpsn_7TM       
IPR000204   Orexin_rcpt       
PDB
5WS3     E-value=1.06542e-18,     Score=222

Ontologies

Topology

Length:
131
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
43.89328
Exp number, first 60 AAs:
36.00854
Total prob of N-in:
0.99725
POSSIBLE N-term signal
sequence
inside
1  -  12
TMhelix
13  -  35
outside
36  -  44
TMhelix
45  -  67
inside
68  -  131
 
 

Population Genetic Test Statistics

Pi
253.738346
Theta
180.163874
Tajima's D
1.405524
CLR
0.005692
CSRT
0.765811709414529
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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