SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11844
Pre Gene Modal
BGIBMGA004429
Annotation
neuropeptide_receptor_A5_precursor_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.959
 

Sequence

CDS
ATGGCACTTAGAAAAGAATCCTTGGCCATAATCACGATGTTGATCATATGCAATTACGTCCTAAGTTCAAACTTCGATTCGATACCAGAGAGCATCAGAGTAAGAAAGTCCGTTGATAACACCACTTCGAGGAGTAGCCTAAAAAATTTAAACGAGACAATGAAACAAAGCAATAATGAAACTGAATTTGGAAGGCTTCTAGATGCAACCGAAATGACAACTGAATATGATAATTTCACTGAAGAGCCCTGCGTTGGCGACCGGGCCTTCTGCAATTTGACCAGAGAGGAGTACATGGAGATGCTGAATGATTACGTGTTCCCTCAGCCCTACGAATGGGTACTCATAGCTACTCACGCCATAGTATTTGTGATCGGGCTGATAGGGAATGCGCTTGTCTGCATAGCGGTGTATAGAAATCATTCCATGAGAACTGTCACGAATTATTTCATCGTGAATCTGGCTGTGGCCGATTTTATGGTGATATTGATATGTCTGCCGCCGACTGTGCTCTGGGACGTCACCGAAACCTGGTTCTTTGGGACAGCCATGTGCAGGATCGTCCTGTACTTTCAGTCAGTGTCAGTGACGGTGTCAGTTCTGACGCTGACGTTCATCTCTGTGGACCGCTGGTACGCTATCTGCTTCCCGCTGAAGTTCAAGTCAACCACGGGCCGCGCCAAGACCGCTATACTGATTATATGGCTTCTATCTCTACTATTCAATATACCGGAATTCGTGGTGCTTCAAGTGCAAACGAAGATGCAGCTGCGCTTCAACGTGCAATACTTCATGCAGTGCGCTTCCACTTGGTCTGATGAAAGCGATCTGACTTGGCACATCATAAAGGCACTGTTTCTGTATACATTCCCGCTATTGCTGATGACGATCGCGTACTGTCAAATCGTACGAGTCCTTTGGAGATCAGACAACATTCCTGGCCACACTGAATCCCACAAGCTGTGCAGCACGCAAACAGGGCAGAGCAATTGGCTGGCGGCATCTCGACGCACAACGCCATCGATCCACACGAACGCCTCCACCGAGGGTCAGCTTCGGTCACGGCGGAAGGCCGCCAAGATGCTGGTGGCTGTGGTAGCGATGTTCGCTGTTTGTTACTTCCCGGTACACCTCCTCTCTGTATTAAGGGTCGCTTTTGACGTGCAACAAACAGACGTGATGACCTGCATCGCTCTGATATCACACGTGATGTGTTACGCGAACTCCGCCGTCAACCCGCTGATTTACAACTTCATGAGCGGGAAATTCCGTCGCGAATTCCACAGATCGTACTTCAAATGTTTCTGCTGCTGTCACACCACGCCGGCGCCAGAACAGAATGGGGCTTCGTTTGAGCCAATCGGCAGTTCTAGAGCTCGGACCATCCGCACCACGGTCCGACGGCACGACTCCTGCGTCAGCTATCGACTCGCCCATCTGTCACCGTCGAACCACAACATTCACCGGGACTACATTCAAAATACGAACACGTCTTTTATCGAGCCAATGAACGGAAATCGCAGGTCTAAAATCAGGGACGAATCGATCAGCGACACCGCGACACGTTTCACGGTGACCACCGATATCCCTTGTAAAGATTGA
Protein
MALRKESLAIITMLIICNYVLSSNFDSIPESIRVRKSVDNTTSRSSLKNLNETMKQSNNETEFGRLLDATEMTTEYDNFTEEPCVGDRAFCNLTREEYMEMLNDYVFPQPYEWVLIATHAIVFVIGLIGNALVCIAVYRNHSMRTVTNYFIVNLAVADFMVILICLPPTVLWDVTETWFFGTAMCRIVLYFQSVSVTVSVLTLTFISVDRWYAICFPLKFKSTTGRAKTAILIIWLLSLLFNIPEFVVLQVQTKMQLRFNVQYFMQCASTWSDESDLTWHIIKALFLYTFPLLLMTIAYCQIVRVLWRSDNIPGHTESHKLCSTQTGQSNWLAASRRTTPSIHTNASTEGQLRSRRKAAKMLVAVVAMFAVCYFPVHLLSVLRVAFDVQQTDVMTCIALISHVMCYANSAVNPLIYNFMSGKFRREFHRSYFKCFCCCHTTPAPEQNGASFEPIGSSRARTIRTTVRRHDSCVSYRLAHLSPSNHNIHRDYIQNTNTSFIEPMNGNRRSKIRDESISDTATRFTVTTDIPCKD

Summary

Similarity
Belongs to the G-protein coupled receptor 1 family.
EMBL
AB330425    BAG68403.1    KT031002    ALM88300.1    LADI01012895    KPJ20751.1    + More
KQ459718    KPJ20254.1    NWSH01002529    PCG68067.1    KF881015    AIT70966.1    MF770987    AXF38049.1    HQ634154    ADX66344.1    KT031014    ALM88312.1    AB330437    BAG68415.1    AGBW02009467    OWR50755.1    JN030894    AEN03789.1    KC439534    AGX85002.1    GEBQ01025181    JAT14796.1    AB817299    BAO01066.1    GECU01010359    JAS97347.1    APCN01005316    GEDC01030319    JAS06979.1    AAAB01008968    JN543509    AEX08666.2    KQ759870    OAD62416.1    KQ434864    KZC09016.1    GBHO01034664    GBHO01034660    GDHC01012203    GDHC01004088    JAG08940.1    JAG08944.1    JAQ06426.1    JAQ14541.1    GBHO01034662    GBHO01034661    GDHC01019905    JAG08942.1    JAG08943.1    JAP98723.1    MG550205    AWT50639.1    GDIP01198480    JAJ24922.1    GDIQ01144722    JAL07004.1    KQ981522    KYN40586.1    GDIP01046399    JAM57316.1    GDIQ01144723    JAL07003.1    GDIQ01182063    JAK69662.1    LRGB01000512    KZS18457.1    GDIQ01065110    JAN29627.1    GDIQ01097150    JAL54576.1    GBYB01002980    GBYB01002983    JAG72747.1    JAG72750.1    KK107390    EZA51412.1    KQ980970    KYN10929.1    KQ976504    KYM82895.1    MF467262    AUR53643.1    KP293976    AKQ63030.1    KP294022    AKQ63076.1    MTYJ01000032    OQV20160.1    AMQN01004356    KB293301    ELU16138.1   
Pfam
PF00001   7tm_1
Interpro
IPR017452   GPCR_Rhodpsn_7TM        + More
IPR000276   GPCR_Rhodpsn       
IPR000204   Orexin_rcpt       
IPR000611   NPY_rcpt       
PDB
5WS3     E-value=3.24933e-54,     Score=537

Ontologies

Topology

SignalP
Position:   1 - 22,         Likelihood:  0.715154
 
 
Length:
533
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
174.50603
Exp number, first 60 AAs:
17.72977
Total prob of N-in:
0.86571
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  114
TMhelix
115  -  137
inside
138  -  148
TMhelix
149  -  171
outside
172  -  185
TMhelix
186  -  208
inside
209  -  228
TMhelix
229  -  251
outside
252  -  284
TMhelix
285  -  307
inside
308  -  361
TMhelix
362  -  384
outside
385  -  393
TMhelix
394  -  416
inside
417  -  533
 
 

Population Genetic Test Statistics

Pi
196.491803
Theta
155.222588
Tajima's D
0.513778
CLR
0.301761
CSRT
0.51902404879756
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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