Gene

KWMTBOMO11843

Annotation

blastopia_polyprotein_[Lasius_niger]

Location

Bomo_Chr20(-):1722671-1726613      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.94

CDS

ATGCCGCCGAAAAAAGACTTACAAGACGCTGAAGGTGAGGAACAGGAAGTAGACGTGCATATTTCATTCAAAGATTTGGAGAAGTCGATGAACATATTTACCGGAGATGACACCTACCCGATTGAGACATTTCTTGACGAATTCGAAGACGTAGCACAGATCATGAATTGGACTAAAGTCGAAAAATTGATTTACGCAAAAAGACTCTTAGAAGGAACTGCCAAGCTTTTCTTACGATCTATGGGAAGGATAAAAGACTACGCAACCTTGAAGAATGCTCTTAAAGAAGAGTTCGGTCCCAAAATTAACAGCGCAGTTGTACACAAAAAACTTGCTTCGCGTAAAATGAAGAATGACGAGACATATCAACAGTACTTCTTGTCGATGAAAGAATTAGCCCTACATGGTAAAGTTGAGGACGCTGCGCTAATAGAATACGTCATAGATGGCATTCGTGACATTGAAGCCAATAAAGCAATTCTGTACGGTGCAGCAGACATAAAAGAATTTCGAAAGAAGTTGGACATCTATAGTGAATTTAGAAAGAAGATGTCTGCTAGATCTTCTCATTCTGGCCAGTCGTCTGCAAGTCACATAACCCATAAGAAGACTCATGTGAAAAGGTGTTTCAACTGTGGCGACTTGGACCATCAAGCACCTGCCTGTCCAAAAGGAATCAAATGTTTTAAATGTAACGAGTTTGGCCACAAATCTACAGACTGTACAAGTAATAAAATCAAGAAGACTCTGAACATTCTAAATAAAAGTGAAGAAGAGAAAGTTCCCTACAAGAAGATAAAGATTAATGAAACAGAAATGATAGCACTAATAGACACAGGAAGCGATGTTAATTTGATTAGGATGACTGAAGCTGAAAGGATTACGAAAGACGCATTGAATAATCAAAATAACTCTAAGATATGCTTGACAGGTATAGCTGAAAAGGAGGTATACACAAAAGGAGTCTTTAATGCAAGATTACAAATAGATGATTGTTACGCTGATATAACATTCTACATTGTCCAAGATAATGACATACCTGTAAATGTAATTTTGGGAAACCCTATATTGAGAGAATTTGAAGTTAACTTTACTGCGAATGGGATATTTGTAGAAAAAATTGTATATCTCACGCTATTAACTGAAGAGAAAAATATCTACAATGAAAACGATACAATTAAATCAGAAAATTCAGACAAAATTAGAAAAATAGTAGAAGAATATAAACCTAACAAAGTAAAGAGAGAAAGTAACGTTGAAATGAAGATTATACTTACCGACGACGAACCAATACATCAAAATCCGCGACGACTTTCACCCCTGGAAATGAAGACGGTTAATGAACAGATAAAAGAATGGATAGAACAAGAGATAATACAACCAAGCAAATCTGACTACGCAAGCCCTGTGGTACTAGCTAATAAGAAAGATGGAACTTACCGACTATGCGTAGACTACCGAAGACTGAATAAGAAGATAATAAAAGACCGGTTCCCATTACCACTGATCGAAGACCAAATAGACAAACTAAAGGAAGCGAAAGTGTACTCGACGCTAGATTTGAAAAATGGATTCATGCACGTTAACGTCCATAAAGATAGCAGGAAGTATACGTCGTTTGTTACGCCCCAAGGCCAATACGAATTTCTTAAAATGCCCTTCGGTCTCTGCACAGCGCCATCTGTATTTCAAAGATTTATTAATAATATCTTTCAAGATCTTATCTCAGATGGCATTGTCCTGACATATCTCGATGATCTTATTGTTCCAGCAAAGACAGAAGAAGAAGGACTGATAAAGTTAGAAAAGGTATTTAAAAGAGCTGCAGAATTTGGTTTACAATTTAACTACAAGAAATGCCATTTCATGAAAAAAGAAATAGAGTATCTGGGCTATGTCATCAAAGATAATGAGGTTCGGCCATCAAAAGAAAAGATTGCCGCGGTGTCTAAATTTAAAATACCACACAATATAAAATTACTACAATCATTTCTCGGACTCACTGGATATTTTAGAAAGTTTGTAAGAAACTACTCTTTGATCGCAAAACCATTAACGAATCTTTTGAAGAATGATACTGAGTTCAATTTTGACGATGAATGTGAAAAGGCTTTTATTGAACTAAAGAAGATACTATGTGGATCGCCAGTTCTCCAAATTTTCAACCCCGATTATGAAACAGAAATTCATACAGACGCAAGCATGGATGGATACGGAGCTGTCCTATTACAGAAATGCCCTAAAGACAATCTAATGCACCCTGTTTATTATATGAGTAAGAAAACGACTCCAGCTGAGAGGAAATACCACAGCTATTATTTAGAAATTTTAGCTATAGTTGCTGCTATTAAGAAGTTCCGAGTTTACGTTTTGGGAATACATTTTAAAATAGTAACCGATTGTTCTGCCCTAACAATGACTTTGCAAAAAAAGGATCTGCCACCGAGAGTCGCCCGTTGGGCTCTGCTCCTCGAAGAATACGATTATGAAATTGAACACAGGCCAGGATCCAGAATGAAGCACGCTGACGCTTTGAGTAGAAATCCAGTTTGTTTAATTCTCACAGAAACGATGGCTCGTTTGAGGAAAGCACAGAACGAAGATGAACGAATAAGACTAATAAAAACAATTTTAGAGAAAGAAAATTATCAAGATTACATAATACAGCGAGACATACTTTACAAAGAGAAGGAAGGAAATAGATTGATTGTTATACCTAAGAAAATGCAGTACGAGATCATTCGTAAAAACCATGAGAGAGGACACTTTGGTATTACAAAAACAGAAGAATTAATCAACAGAGAATATTATATTGAGAATTTACAAGATAAGATAAGAAAAGTTATAGATAACTGCGTTGAATGCATTCTCATATCGCACAAGAGAGGTAAAAGGGAAGGACTATTACACCCGATAGACAAAGGCAATGTTCCATTATCAACATACCACATTGATCATCTCGGACCTTTGACATCTACTCATAAAAATTACAAGTATATCCTCACCGTTGTTGACGCTTATACCAAATTTACCTGGATTTACCCTGTTAAGACTCTTACCGCTCTAGAGACGGTAGAAAAGTTAAGACTGCAACAGCAAACTTTCGGGTCACCAGAAAGGATTATTACTGATCGAAACGCCGCATTTACTGCAAATGAATTTCAAGAGTACTGCCGTAATGAAAATATTACACACTATATGATTACTACAGGACAACCCAGAGGAAATGGCCAGGTCGAAAGGATTCATCAGATTATTATTGCCGTGTTGAGCAAGCTCAGCGCTGATGATCCGACCAAATGGTACCGCCGTGTGTCTGTAGTACAACGCTGTCTGAATGGTACCTACCAAAGAAGCATAGGAATGACGCCATTTGAATTACTCTTTGGCACTAAAATAAAAGATAAAGACGATGATGAACTTAAGAAGTTAATAGAGGAAGAAGAAATACAAATGTTTAAAGAAAAAAGACAAGAGCTGAGAGAAAAAGCTAAAGAATCGCTACTGAAGATACAAGAAGAAAACATAAAAAATTATAACAGAAAGAGAAAAGAAGCGACGTCTTACAAAGTTGGCGATCTAGTTGCAATCAAGAAAACGCAGTTCTCTCAAGGCAGTAAATTATTTCCTAAGTACCTAGGACCTTATGAAGTCTTAAAAAACAAAAGAAATGACCGATATGTTGTGAAGAAAGTTGGAAATACAGAAGGTCCAATCAACACGACTTCTTCTGCTGATTTCATGAAACCATGGGTCACGTCGGAAGAAAATTATTCATCTGGGTCAGATGATTAA

Protein

MPPKKDLQDAEGEEQEVDVHISFKDLEKSMNIFTGDDTYPIETFLDEFEDVAQIMNWTKVEKLIYAKRLLEGTAKLFLRSMGRIKDYATLKNALKEEFGPKINSAVVHKKLASRKMKNDETYQQYFLSMKELALHGKVEDAALIEYVIDGIRDIEANKAILYGAADIKEFRKKLDIYSEFRKKMSARSSHSGQSSASHITHKKTHVKRCFNCGDLDHQAPACPKGIKCFKCNEFGHKSTDCTSNKIKKTLNILNKSEEEKVPYKKIKINETEMIALIDTGSDVNLIRMTEAERITKDALNNQNNSKICLTGIAEKEVYTKGVFNARLQIDDCYADITFYIVQDNDIPVNVILGNPILREFEVNFTANGIFVEKIVYLTLLTEEKNIYNENDTIKSENSDKIRKIVEEYKPNKVKRESNVEMKIILTDDEPIHQNPRRLSPLEMKTVNEQIKEWIEQEIIQPSKSDYASPVVLANKKDGTYRLCVDYRRLNKKIIKDRFPLPLIEDQIDKLKEAKVYSTLDLKNGFMHVNVHKDSRKYTSFVTPQGQYEFLKMPFGLCTAPSVFQRFINNIFQDLISDGIVLTYLDDLIVPAKTEEEGLIKLEKVFKRAAEFGLQFNYKKCHFMKKEIEYLGYVIKDNEVRPSKEKIAAVSKFKIPHNIKLLQSFLGLTGYFRKFVRNYSLIAKPLTNLLKNDTEFNFDDECEKAFIELKKILCGSPVLQIFNPDYETEIHTDASMDGYGAVLLQKCPKDNLMHPVYYMSKKTTPAERKYHSYYLEILAIVAAIKKFRVYVLGIHFKIVTDCSALTMTLQKKDLPPRVARWALLLEEYDYEIEHRPGSRMKHADALSRNPVCLILTETMARLRKAQNEDERIRLIKTILEKENYQDYIIQRDILYKEKEGNRLIVIPKKMQYEIIRKNHERGHFGITKTEELINREYYIENLQDKIRKVIDNCVECILISHKRGKREGLLHPIDKGNVPLSTYHIDHLGPLTSTHKNYKYILTVVDAYTKFTWIYPVKTLTALETVEKLRLQQQTFGSPERIITDRNAAFTANEFQEYCRNENITHYMITTGQPRGNGQVERIHQIIIAVLSKLSADDPTKWYRRVSVVQRCLNGTYQRSIGMTPFELLFGTKIKDKDDDELKKLIEEEEIQMFKEKRQELREKAKESLLKIQEENIKNYNRKRKEATSYKVGDLVAIKKTQFSQGSKLFPKYLGPYEVLKNKRNDRYVVKKVGNTEGPINTTSSADFMKPWVTSEENYSSGSDD

Uniprot

A0A023EYF0   A0A023F013   J9JZ77   A0A0A1XB16   A0A0J7K9X8   J9JQ65   + More
A0A023EY26   A0A023EZG2   A0A023EYH9   A0A1W7R6L8   A0A0J7KLK4   A0A0J7K890   A0A0J7NF11   W8C8Q1   A0A0A1XFE9   W8B0V9   X1X261   W8APB2   A0A2M4AEU2   A0A034VAM6   A0A0A1WKC8   A0A034VKV9   A0A034VLR3   Q24262   A0A2M4CKM2   Q961S4   A0A224XHR1   A0A1Y1MFA9   A0A2S2NKJ2   A0A2H8TRV6   J9LBS9   A0A2S2PFS2   A0A2S2NFQ4   J9JJ45   X1X5H2   X1WPP0   A0A1W7R6R7   A0A2S2P032   X1XU22   X1XU14   A0A2S2PGQ9   A0A1W7R6G2   X1XD76   A0A1W7R6H1   A0A0J7KEC9   A0A0C9RXL6   A0A2S2QVZ0   A0A194R1L3   A0A1W7R6G1   T1PMR9   B7S8P8   X1XU38   A0A0J7KJ08   A0A034WRX5   J9L2R5   A0A2S2PD17   A0A2S2PH69   A0A0A9Z954   J9K875   A0A2S2N9B2   J9KMH9  

Pubmed

25474469    25830018    24495485    25348373    8055714    28004739    + More
26354079    25401762   

EMBL

GBBI01004549    JAC14163.1    GBBI01004613    JAC14099.1    ABLF02014660    ABLF02042774    + More
GBXI01005773    JAD08519.1    LBMM01010976    KMQ87102.1    ABLF02005846    GBBI01004477    JAC14235.1    GBBI01004551    JAC14161.1    GBBI01004550    JAC14162.1    GEHC01000930    JAV46715.1    LBMM01005919    KMQ91096.1    LBMM01011782    KMQ86633.1    KMQ91095.1    GAMC01007326    JAB99229.1    GBXI01004632    JAD09660.1    GAMC01015907    JAB90648.1    ABLF02005127    ABLF02005129    ABLF02007401    GAMC01020207    JAB86348.1    GGFK01005990    MBW39311.1    GAKP01019383    JAC39569.1    GBXI01015151    JAC99140.1    GAKP01016235    JAC42717.1    GAKP01016237    JAC42715.1    Z27119    CAA81643.1    GGFL01001689    MBW65867.1    AY050234    AAK84933.1    GFTR01008753    JAW07673.1    GEZM01033083    JAV84424.1    GGMR01005091    MBY17710.1    GFXV01005120    MBW16925.1    ABLF02041876    GGMR01015682    MBY28301.1    GGMR01003388    MBY16007.1    ABLF02008401    ABLF02008404    ABLF02004401    ABLF02013544    ABLF02013550    ABLF02033943    ABLF02042737    GEHC01000880    JAV46765.1    GGMR01009949    MBY22568.1    ABLF02017401    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    GGMR01016004    MBY28623.1    GEHC01000888    JAV46757.1    ABLF02022032    GEHC01000876    JAV46769.1    LBMM01008871    KMQ88569.1    GBYB01013920    JAG83687.1    GGMS01012726    MBY81929.1    KQ460883    KPJ11409.1    GEHC01000891    JAV46754.1    KA649989    AFP64618.1    EF710649    ACE75273.1    ABLF02024793    LBMM01006880    KMQ90234.1    GAKP01001563    JAC57389.1    ABLF02008946    GGMR01014665    MBY27284.1    GGMR01015939    MBY28558.1    GBHO01040010    GBHO01001812    JAG03594.1    JAG41792.1    ABLF02002940    ABLF02002941    ABLF02002942    ABLF02048237    ABLF02057838    ABLF02061919    ABLF02067277    GGMR01000717    MBY13336.1    ABLF02028808   

Proteomes

UP000007819    UP000036403    UP000053240   

PRIDE

Q24262    Q961S4   

Pfam

PF17917   RT_RNaseH        + More
PF00078   RVT_1
PF00098   zf-CCHC
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF02037   SAP
PF09668   Asp_protease
PF00077   RVP
PF03732   Retrotrans_gag
PF12384   Peptidase_A2B
PF13873   Myb_DNA-bind_5
PF16064   DUF4806

Interpro

IPR000477   RT_dom        + More
IPR041373   RT_RNaseH       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR036361   SAP_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR003034   SAP_dom       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR018061   Retropepsins       
IPR005162   Retrotrans_gag_dom       
IPR024650   Peptidase_A2B       
IPR034145   RP_RTVL-H-like       
IPR028002   Myb_DNA-bind_5       
IPR032071   DUF4806       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF68906   SSF68906       

Gene 3D

2.40.70.10     3.30.420.10     1.10.720.30    

CDD

cd06095  RP_RTVL_H_like

ProteinModelPortal

A0A023EYF0   A0A023F013   J9JZ77   A0A0A1XB16   A0A0J7K9X8   J9JQ65   + More
A0A023EY26   A0A023EZG2   A0A023EYH9   A0A1W7R6L8   A0A0J7KLK4   A0A0J7K890   A0A0J7NF11   W8C8Q1   A0A0A1XFE9   W8B0V9   X1X261   W8APB2   A0A2M4AEU2   A0A034VAM6   A0A0A1WKC8   A0A034VKV9   A0A034VLR3   Q24262   A0A2M4CKM2   Q961S4   A0A224XHR1   A0A1Y1MFA9   A0A2S2NKJ2   A0A2H8TRV6   J9LBS9   A0A2S2PFS2   A0A2S2NFQ4   J9JJ45   X1X5H2   X1WPP0   A0A1W7R6R7   A0A2S2P032   X1XU22   X1XU14   A0A2S2PGQ9   A0A1W7R6G2   X1XD76   A0A1W7R6H1   A0A0J7KEC9   A0A0C9RXL6   A0A2S2QVZ0   A0A194R1L3   A0A1W7R6G1   T1PMR9   B7S8P8   X1XU38   A0A0J7KJ08   A0A034WRX5   J9L2R5   A0A2S2PD17   A0A2S2PH69   A0A0A9Z954   J9K875   A0A2S2N9B2   J9KMH9  

PDB

4OL8     E-value=3.62673e-74,     Score=712

KEGG

NA   

GO

GO:0008270   GO:0003676   GO:0015074   GO:0004190   GO:0003964   GO:0016021   GO:0006508   GO:0004890   GO:0005216   GO:0043564   GO:0006418   GO:0003824  

Length:

1264

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00314

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1  -  1264

 

 

Pi

184.97284

Theta

65.206464

Tajima's D

3.303166

CLR

0.35617

CSRT

0.989750512474376

Interpretation

Uncertain