SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11832
Pre Gene Modal
BGIBMGA014057
Annotation
FATP_[Manduca_sexta]
Location in the cell
PlasmaMembrane   Reliability : 2.576
 

Sequence

CDS
ATGTCAGAGAAGAGAGGGGTTCGATTTGAAGAGGCCGAGCGGTGTAAGGGGATTATCCTCACGTCCATAGCGCTGACAACAGCTGGACTGGGATGGCTTCTACGCGGCTCTCCGACCATGATGAGCGCTGTTGCGACGCTGGGAGCTTATCTATTGACCGGTGATAGATACCAATGGATTTACCTTTGGAAGAAGACGCACAAGAGGGATTTTCTAGGTCTAAGGGTACTGTTAGCGACAATGTTCAGGATATGGCGTTGGGAAAAACAAGGCCAGTCAGTGGTGTCAAGGTGGGCGGAAATAGCGAAGCTGTATCCGGAAAAGAAGGCTTTTATCATGGGGGACAGGGCTCTCACCTTTCGTCAGGGAGAAGACTTTAGTAACCGCATAGCCTGGTACTTCAAACGTCAAGGCTTCAAAAGCGGTGAGGTAATAGCTCTATTCATGGAGACACAACCAGAATACATCTTTGTGTGGCTAGGTTTAGCTAAAATGAAGGTCACGACTGCATTAGTGAATACAAATCTAAGAGGTCAACAATTGATTCACTGTTTGAGAATAGTTGGATGCAAAGCTGTCGTATTTGGCGATGAAATGGCGGACGCTATAAAAGAAATTCAGAGCGAAATCCATGACATGCCTCTCTTTCAATTCAATTCGCCAGAGAGAGACGGCAGTACAGTCTTACAAGATACAGTGCCATTAGCCGCTGAGCTAGAGGAAATGTCCTCTGAAACTTTTCCTATAGTGCCAACAAATCCAAGAGACACCTTATTGTATATTTACACTAGCGGAACGACTGGGTTTCCTAAAGCGGCCATTATAACAAATATCAGATTTCTCCTAATCCCTCTAGGAGTATTTACATCGGTTCGACTTTCTCCGGCGGACGTGGTTTACGATCCACTACCGTTGCACCACACGGCTGGTGGGGTCCTAGGGGCTGGGCAAGCAATAACCCAAGGCTGCACCGTGGTGCTGAGACGGAAATTCTCAGCCTCCAACTATTGGAGTGATGCAGCGAAACATGGATGCACTGCGGCACAGTACATTGGTGAAATATGCCGTTATTTGCTCTCTGTCCCCGCTGGTCCTAGCGATAAGGCGCATAAAGTTAAGGTTATCTTCGGCAACGGACTAAGGCCGCAGATCTGGCAAGAGTTCGTTGACCGTTTCGGCGTAGGCAGAGTTTTAGAATTCTACGGAGCCACAGAAGGAAACAGCAATCTCATTAATTTGGATAATAAAGTCGGCGCGATCGGTTTTTTGAGTAGACTGGTCTCTTCAATATACCCCTTAACGCTAGTTAGGTGTGACGAAATAACTGGTGAAATACTGAGAGATGACAATGGACGGTGTATAACTTGTGGACCACATGAACCTGGGTTGCTGTTAGGAAAAATTGATCCAAAGAAAGCCATTCTGACGTTCGCTGGCTACGCTGACAAGACTGCTTCCGAAAAGAAGATGGTCCGCAACGTGAGGATCGAAGGCGATTGCTACTTCAACACAGGAGACATTCTAGTGATGGATCACTATGGCTACTTTTATTTCAAGGATCGGACCGGAGACACGTTCCGGTAA
Protein
MSEKRGVRFEEAERCKGIILTSIALTTAGLGWLLRGSPTMMSAVATLGAYLLTGDRYQWIYLWKKTHKRDFLGLRVLLATMFRIWRWEKQGQSVVSRWAEIAKLYPEKKAFIMGDRALTFRQGEDFSNRIAWYFKRQGFKSGEVIALFMETQPEYIFVWLGLAKMKVTTALVNTNLRGQQLIHCLRIVGCKAVVFGDEMADAIKEIQSEIHDMPLFQFNSPERDGSTVLQDTVPLAAELEEMSSETFPIVPTNPRDTLLYIYTSGTTGFPKAAIITNIRFLLIPLGVFTSVRLSPADVVYDPLPLHHTAGGVLGAGQAITQGCTVVLRRKFSASNYWSDAAKHGCTAAQYIGEICRYLLSVPAGPSDKAHKVKVIFGNGLRPQIWQEFVDRFGVGRVLEFYGATEGNSNLINLDNKVGAIGFLSRLVSSIYPLTLVRCDEITGEILRDDNGRCITCGPHEPGLLLGKIDPKKAILTFAGYADKTASEKKMVRNVRIEGDCYFNTGDILVMDHYGYFYFKDRTGDTFR

Summary

EMBL
GQ245679    ACT22576.1    KZ149937    PZC77115.1    NWSH01000350    PCG77146.1    + More
KU755521    ARD71231.1    KT261736    ALJ30276.1    ODYU01000976    SOQ36540.1    KQ459460    KPJ00772.1    KF960752    AII21954.1    KQ459838    KPJ19747.1    BABH01041803    BABH01041804    AGBW02011735    OWR46207.1    JTDY01007385    KOB65251.1    GDAI01000209    JAI17394.1    KQ434878    KZC09870.1    KZ288231    PBC31557.1    JR039957    AEY58921.1    GL888404    EGI61604.1    GL761646    EFZ23036.1    KQ414613    KOC69092.1    GL448189    EFN85194.1    KK107063    EZA61088.1    GFDL01006768    JAV28277.1    KQ971352    EFA06666.2    GFDL01006664    JAV28381.1    JXUM01021136    KQ560592    KXJ81748.1    CH940648    EDW60641.2    KQ977054    KYN06085.1    QOIP01000005    RLU22958.1    CP012524    ALC41879.1    GFDL01006786    JAV28259.1    GFDL01006599    JAV28446.1    GFDL01006583    JAV28462.1    GFDL01006531    JAV28514.1    GFDL01006539    JAV28506.1    GFDL01006663    JAV28382.1    GFDL01006757    JAV28288.1    GFDL01006772    JAV28273.1    NEVH01016978    PNF24770.1    GBXI01005144    GBXI01000967    JAD09148.1    JAD13325.1    CH954179    KQS63114.1    EDV56980.2    CM000158    EDW92512.2    CH963894    EDW77130.2    GEZM01032422    GEZM01032421    JAV84590.1    CH477488    EAT40094.1    UFQS01000039    UFQT01000039    SSW98137.1    SSX18523.1    AJWK01019388    KQ981914    KYN33092.1    CH902619    KPU76856.1    CH933808    EDW10831.2    AE013599    AAM68309.1    GDHF01009377    JAI42937.1    EDV37481.2    CM002911    KMY96306.1    OUUW01000001    SPP73390.1    DS235858    EEB19125.1    AY084177    AAF47192.2    AAL89915.1    GDHF01033550    GDHF01025098    GDHF01024289    GDHF01021224    GDHF01015145    GDHF01011910    GDHF01006066    GDHF01001801    JAI18764.1    JAI27216.1    JAI28025.1    JAI31090.1    JAI37169.1    JAI40404.1    JAI46248.1    JAI50513.1    CH480838    EDW49169.1    SPP73389.1    KQ976662    KYM78334.1    AXCN02001123    KQ979579    KYN20655.1    GAKP01011830    GAKP01011829    GAKP01011820    JAC47123.1    KQ982314    KYQ58100.1    CM000362    EDX08527.1    GFDF01002639    JAV11445.1    ATLV01027105    KE525423    KFB53960.1    GGFK01002236    MBW35557.1    CH916367    EDW00632.1    GGFK01002649    MBW35970.1    EZ423394    ADD19670.1    DS232762    EDS45504.1    CCAG010021503    CH479213    EDW33315.1    GAMC01014587    JAB91968.1    GGFJ01002920    MBW52061.1    CM000071    EDY69549.2    ENO01974.2    KRT03177.1    KQ978456    KYM93879.1    NEVH01013990    PNF27940.1    KRT03178.1    GFDL01005560    JAV29485.1    GFDL01002084    JAV32961.1    CVRI01000013    CRK89635.1    GGFJ01002919    MBW52060.1    GGFM01002623    MBW23374.1    GDKW01002815    JAI53780.1    JXJN01002362    JXJN01002363    GGFM01008366    MBW29117.1   
Pfam
PF00501   AMP-binding        + More
PF13193   AMP-binding_C
PF00957   Synaptobrevin
PF04051   TRAPP
Interpro
IPR025110   AMP-bd_C        + More
IPR020845   AMP-binding_CS       
IPR042099   AMP-dep_Synthh-like_sf       
IPR000873   AMP-dep_Synth/Lig       
IPR001388   Synaptobrevin       
IPR030304   FATP4       
IPR024096   NO_sig/Golgi_transp_ligand-bd       
IPR007194   TRAPP_component       
IPR016696   TRAPP-I_su5       
IPR006619   PGRP_domain_met/bac       
IPR002502   Amidase_domain       
IPR036505   Amidase/PGRP_sf       
SUPFAM
SSF111126   SSF111126        + More
SSF55846   SSF55846       
Gene 3D
PDB
3ETC     E-value=3.92009e-19,     Score=234

Ontologies

Topology

Length:
527
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
16.92625
Exp number, first 60 AAs:
14.89537
Total prob of N-in:
0.67261
POSSIBLE N-term signal
sequence
outside
1  -  527
 
 

Population Genetic Test Statistics

Pi
213.685234
Theta
172.479646
Tajima's D
0.68753
CLR
0.393565
CSRT
0.564971751412429
Interpretation
Uncertain
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