Gene
KWMTBOMO11826
Pre Gene Modal
BGIBMGA013688
Annotation
PREDICTED:_organic_cation_transporter_1-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane Reliability : 4.47
Sequence
CDS
ATGACATCTTGGACGAAGGAGTTGGACGAGGCGGCAGTGCTGGCCACCAGAACCGGCCATTGGCATGTGGTCTTATTCTACCTTCTATGTGGCCTGGCCGCAATACCTACCTCATTCCTGGTTTTTTCACAAGTGTTCACAAACGCTACTCCCGAGCACTGGTGTGCGCCACCTCCAGAACTCGAGGCTCTGAGCCTTCCACGAGACCTGGTGCGCTCTCTGACGATACCAAAAGTACCAGGAGAACATAGCTCGTATGAAACTTGCCGTGAATACGCCGTTGACCCACACGCGTTGTTCGAAGAATTGAAAGAGTTTGTTGTAGAAAGTTCGAAGGCTATCAGAGAAGGAGGCGCGTTACATGTCGTGAACACACGTCAATTGTTTTTGTCCAATGACGAAAACGAAAGGAAATTGCAGATCTCCAAAGTGGAAGGAGCTATTCTATCGATCAGAGATAACTCCACGTCACCGTGTTCTCGCGGCTGGACTTACAGCACAGAGCATTACAAAAGGACGCTTGTTACTGACTTTTCCTTGGTCTGTGACAAGGAATGGCTGCCACGGACCAGCAATACCCTGTTCTGGGTTGGCTCCATCTTCGGGAATTTGTTCTTCGGGTGGATGTCGGACAGATACGGTCGACGTCCAACGATTCTACTGATGATCTTCCTGGAAGTTCCCCTGGCGATATCCGCGTCCTTTGCCACCACCTACTGGACGTATATCGTGCTGAGAGTGGCCGGAGGACTATTCTTCCCGGCTCTCTACCAGCTACCGTTCATACTGGCCTTGGAGCTTATGCCTCCTGGAAGAAGAAACATTGCCGGAATTGTCGTCGGGATGCTGTTCGCCACCGGCATGTGTCTACTCTCTCTGCTGGCCTACGCCGTAAGGGACTGGTACCATCTATCGCTGGTCACTAGTCTGCCTTTCCTGCTGCTGTACGGATATTACTGGCTGATACCAGAGTCTCCGAGATGGTTGGTCGGCAGAGGCCGTATCGCTGAAGCTGAAAAGGTGCTACGGGACCTCGCTAAGAAAAACGGAATACGGTTACGGAAAGGGTTCCTCCTGGAGCTACACAAGAAAACAAAAGAAGAAGAAGATGCAGCAGAAATGACCTGCGTGTCCAACGGGCACTACGGCAGAATTACGAAAGATGACCTGGACAGAAGGATCAGCAACATGCTGACCTTCCGTCCGGATCTTACCAGGATCGCAGAAACCGTAGGAAGTAAAAATGACGATTTAGAACGAACTTTCGCGCTGGAACTCACCGAAAGAGAAATCAAATCTAAAACAAAAGAATACGAAAGAGACGACAATAGAGAGTTCAATGATGAAGATTCGCAGCAGAAGTGGACTCAAACGGATTTCAAGTCACCTGGAGATACACTAAGAAGGAAATCCTTACAGCTTGTTAGTAAGATATTCATCCAAGAAGATGAAGTAGACGTGATGGAAAACAAGAGAATGGATGATCAGAACTCCGAGGGTGACTGTAAGGCCTCCCCGCTGGATGTGTTCAGATACCCCAATCTCAGGAGGAAGTTCTTGATTTTGACTTTTGACTGGGTCTCTCTGGGCGTGGTCTACAACAGTCTCAGCTACAATACTCCCAACTTGGGCGTCGATGATTACTTGGCGTTCTTTATTGGCGGCGCGGTGGAGCTCCCGTCCTACGTCCTGGCGTGGCGATGCATGGAGAGGCTCGGCAGGCGCTGGGTGCTCTGCGCCTTCATGTGCGTCGGTGGCCTGGCCTGTCTCAGCTGCGTGCTCGTGCCGGAGTCGTGGCCCTGGATAACGGTGTCTCTAGCGATGCTCGGCAGGCTGTGTGCCGCGTCATCCTTCGCAGTCTTCTACGTGATGATCGGAGAATTGCTGCCCACTGTACTGAGAGCCCAGGCGATGGGCACGGCCTCCTTCATATCGGGTCTCGGCTTGCTGGCCTGCCCGTATATCGTTCACTTGGCGATCTACGCGCGAGCTTTGCCGCTGATCATCATGGGTATACTGAGCGTCGTGGGCGGGATCACGTCGCTGTTCCTGCCCGAGACCCTGAACCAGCCTTTGCCTCAAACGCTGGGAGACGGAGAAAGATTCGGAAGAGATTTCAAAATATTAAGTTGTGTCGAAAGACCGAAGAAATTACGACGCGTCGCTTCTGACGTCCTGGTACTCTGA
Protein
MTSWTKELDEAAVLATRTGHWHVVLFYLLCGLAAIPTSFLVFSQVFTNATPEHWCAPPPELEALSLPRDLVRSLTIPKVPGEHSSYETCREYAVDPHALFEELKEFVVESSKAIREGGALHVVNTRQLFLSNDENERKLQISKVEGAILSIRDNSTSPCSRGWTYSTEHYKRTLVTDFSLVCDKEWLPRTSNTLFWVGSIFGNLFFGWMSDRYGRRPTILLMIFLEVPLAISASFATTYWTYIVLRVAGGLFFPALYQLPFILALELMPPGRRNIAGIVVGMLFATGMCLLSLLAYAVRDWYHLSLVTSLPFLLLYGYYWLIPESPRWLVGRGRIAEAEKVLRDLAKKNGIRLRKGFLLELHKKTKEEEDAAEMTCVSNGHYGRITKDDLDRRISNMLTFRPDLTRIAETVGSKNDDLERTFALELTEREIKSKTKEYERDDNREFNDEDSQQKWTQTDFKSPGDTLRRKSLQLVSKIFIQEDEVDVMENKRMDDQNSEGDCKASPLDVFRYPNLRRKFLILTFDWVSLGVVYNSLSYNTPNLGVDDYLAFFIGGAVELPSYVLAWRCMERLGRRWVLCAFMCVGGLACLSCVLVPESWPWITVSLAMLGRLCAASSFAVFYVMIGELLPTVLRAQAMGTASFISGLGLLACPYIVHLAIYARALPLIIMGILSVVGGITSLFLPETLNQPLPQTLGDGERFGRDFKILSCVERPKKLRRVASDVLVL
Summary
Uniprot
EMBL
Proteomes
PRIDE
Interpro
SUPFAM
SSF103473
SSF103473
CDD
ProteinModelPortal
PDB
6N3I
E-value=0.000650703,
Score=104
Ontologies
GO
Topology
Length:
728
Number of predicted TMHs:
11
Exp number of AAs in TMHs:
243.75165
Exp number, first 60 AAs:
22.54592
Total prob of N-in:
0.63958
POSSIBLE N-term signal
sequence
outside
1 - 19
TMhelix
20 - 42
inside
43 - 218
TMhelix
219 - 241
outside
242 - 244
TMhelix
245 - 267
inside
268 - 273
TMhelix
274 - 296
outside
297 - 300
TMhelix
301 - 323
inside
324 - 518
TMhelix
519 - 538
outside
539 - 547
TMhelix
548 - 565
inside
566 - 576
TMhelix
577 - 599
outside
600 - 603
TMhelix
604 - 626
inside
627 - 638
TMhelix
639 - 661
outside
662 - 664
TMhelix
665 - 684
inside
685 - 728
Population Genetic Test Statistics
Pi
189.217003
Theta
14.370747
Tajima's D
0.067247
CLR
0.143938
CSRT
0.391980400979951
Interpretation
Uncertain
