SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11819
Annotation
PREDICTED:_uncharacterized_protein_LOC106720295_[Papilio_machaon]
Location in the cell
Mitochondrial   Reliability : 2.484 Nuclear   Reliability : 1.883
 

Sequence

CDS
ATGGATATTTACTCCAAACTATTTGCACAACTGGAAGACTTGTCTACAATACTGAACTTAAGAATGGCACAACACGAAGAAGATTTGAAGAATGCAGCTACCACAGATCTCCCACATAAAACCATAGCGAGTTTATCCCGTGAGTTTGCTGAATTTAAATCCTTTGTGTGTAATGCACTAAGTGCTTTGAAAACTCAAATCGAGTTGCTTACTTTGGGCCTGGACAGACACGAAATGATGTCTCGTCGGAAAGTACTGTTGCTTCATGGGGTCAACAATAATAAAGACCCTTCAGCTACTGTTTTGGATATTTTAAAAGGTCCCATGAAATTGAGTCATATAATTTCAACTGACATAGTAACCTGTCATCATCTTGGAGCTAATAAAAGCAAGCCTCGTCCAGTTTTAATAAGGTTCAAATGCCATAGCCATCGAAGTGAAGTTTGGAAGAATAAGGTGTTGCTGAAGGGTTCTGGGTTGACGTTGTCTGAATTCTTGACGAAGTCCCGCCATGATGCATTTCTGGGTGCTCGCAAACATTTTGGCCTTAAGCAGTGCTGGACATCAGAAGGCAAGATAGTAATCCAGCTGTCTGATAAAACACGTCGGAAGATAGAGACTGTCGCTGAGCTCCGTCTGTTGATAAATCAGTACCCTGTGGCACCAGCGCCTAGTGATGAGTCTGTTGAAGCCGTGAAAACCACAAAGTCGCAGGTCAAGAATACGTCGGACAAGAGGATCCGTAAACCACCTAAACAATAA
Protein
MDIYSKLFAQLEDLSTILNLRMAQHEEDLKNAATTDLPHKTIASLSREFAEFKSFVCNALSALKTQIELLTLGLDRHEMMSRRKVLLLHGVNNNKDPSATVLDILKGPMKLSHIISTDIVTCHHLGANKSKPRPVLIRFKCHSHRSEVWKNKVLLKGSGLTLSEFLTKSRHDAFLGARKHFGLKQCWTSEGKIVIQLSDKTRRKIETVAELRLLINQYPVAPAPSDESVEAVKTTKSQVKNTSDKRIRKPPKQ

Summary

EMBL
NWSH01000709    PCG74665.1    ODYU01005692    SOQ46801.1    NWSH01002122    PCG69097.1    + More
NWSH01001172    PCG72268.1    KZ150113    PZC73314.1    JTDY01004815    JTDY01001265    KOB67717.1    KOB74342.1    JTDY01004162    KOB68510.1    NWSH01000981    PCG73266.1    KZ150731    PZC70355.1    KZ149998    PZC75357.1    NWSH01004711    PCG64730.1    NWSH01004248    PCG65306.1    NWSH01000964    PCG73374.1    BABH01019446    BABH01019447    BABH01019448    BABH01019449    BABH01019450    NWSH01000800    PCG74117.1    JTDY01001444    KOB73845.1    JTDY01016995    KOB51870.1    ODYU01012456    SOQ58773.1    JTDY01009052    KOB64154.1    JTDY01015832    KOB51930.1    JTDY01009601    KOB63242.1    JTDY01010801    JTDY01009435    KOB57999.1    KOB63512.1    JTDY01002460    KOB71369.1    JTDY01005020    KOB67468.1    KZ150083    PZC73827.1    KZ149916    PZC77943.1    NWSH01001465    PCG71162.1    PCG71163.1    JTDY01003374    KOB69654.1    JTDY01007405    KOB65227.1    JTDY01004770    KOB67785.1    ODYU01006869    SOQ49099.1    NWSH01000512    PCG75926.1    NWSH01008089    PCG62701.1    NWSH01000574    PCG75564.1    KOB73846.1    NWSH01001639    PCG70611.1    NWSH01000695    PCG74738.1    JTDY01000147    KOB78598.1    ODYU01003266    SOQ41795.1    KZ150737    PZC70349.1    NWSH01002863    PCG67420.1    NWSH01000281    PCG77797.1    GAIX01004118    JAA88442.1    ODYU01010789    SOQ56106.1    RSAL01001827    RVE40669.1    JTDY01000235    KOB78128.1    JTDY01009138    KOB64057.1    JTDY01010087    KOB61249.1    KOB61251.1    GEZM01099243    JAV53413.1    JTDY01000521    KOB76815.1    GEBQ01022228    JAT17749.1   
Pfam
PF00027   cNMP_binding        + More
PF01582   TIR
PF14529   Exo_endo_phos_2
Interpro
IPR004244   Transposase_22        + More
IPR000595   cNMP-bd_dom       
IPR014710   RmlC-like_jellyroll       
IPR018490   cNMP-bd-like       
IPR035897   Toll_tir_struct_dom_sf       
IPR000157   TIR_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
SUPFAM
SSF51206   SSF51206        + More
SSF52200   SSF52200       
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
253
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00791999999999999
Exp number, first 60 AAs:
0.00262
Total prob of N-in:
0.05624
outside
1  -  253
 
 

Population Genetic Test Statistics

Pi
207.930843
Theta
135.798932
Tajima's D
1.431717
CLR
2065.97257
CSRT
0.770511474426279
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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