SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11812  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013680
Annotation
cytochrome_c_oxidase_polypeptide_IV_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.445
 

Sequence

CDS
ATGGCCAATTATCTGATGCGCCGGGCGCTCATCAATGCTATCCGTGTTCCTGTCTGCGCCAGGGCTGGATCCACTGGAAACACTGAACTTGCCAAGATTGGTGACCGTGAGTGGGTAGGCTATGGTTTCAACGGCCAGCCCAACTACGTAGACAGGCCTGACTTCCCCCTGCCTGCCATCCGGTTCCGTGAGGACACCCCTGACATTAAGGCTCTCCGTGAAAAAGAAAAGGGTGATTGGCGCAAATTGACCCTCGAAGAAAAGAAAACTCTGTACAGAGCTTCATTCTGTCAGACCTTCGCTGAGTTCCAGGCCCCCACCGGAGAGTGGAAGGGAGTCGTTGGTTGGGCTCTAGTCCTCTCATCTTTGGCTGCTTGGATCTACATGGCCATGAAAGTCTTTGTGTACAGTCCTATTCCTGACTCATTGAGTGAAGAGAGGCAGAAGGCTCAGCTCCAGAGAATGTTGGACCTTAAGGTGAATCCCATCGATGGACTTGCCTCCAAGTGGGACTACGAAAACAACCGCTGGAAGTAA
Protein
MANYLMRRALINAIRVPVCARAGSTGNTELAKIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYENNRWK

Summary

EMBL
BABH01038715    DQ443154    DQ813501    ABF51243.1    ABG67687.1    ODYU01005887    + More
SOQ47238.1    JN082714    AER27812.1    MG992407    AXY94845.1    AK401410    BAM18032.1    HM449866    ADO33001.1    AGBW02010297    OWR48774.1    GAIX01006001    JAA86559.1    NWSH01004166    PCG65415.1    KQ460141    KPJ17487.1    KQ459460    KPJ00744.1    MF374344    AWK22770.1    RBVL01000247    RKO10148.1    JX847497    JX847498    AGG22607.1    GDRN01015602    JAI67845.1    GDIQ01248857    GDIQ01224116    GDIQ01097752    GDIP01134011    JAK02868.1    JAL69703.1    GDIQ01251858    JAJ99866.1    GDIQ01250408    JAK01317.1    GDIP01185555    GDIQ01248856    JAJ37847.1    JAK02869.1    GDIP01145661    GDIQ01226465    JAJ77741.1    JAK25260.1    GDIP01088220    JAM15495.1    GDIQ01225362    JAK26363.1    GDIQ01225363    JAK26362.1    JQ828862    AFY10818.1    GDIQ01253116    GDIQ01204974    GDIQ01198973    GDIP01141511    JAK46751.1    JAL62203.1    GDIQ01221317    JAK30408.1    GDIQ01251859    JAJ99865.1    GDIQ01250409    JAK01316.1    GDIP01220500    JAJ02902.1    GDIP01212051    JAJ11351.1    GDIP01088219    JAM15496.1    GDIQ01146698    JAL05028.1    GDIQ01185824    JAK65901.1    GDIQ01124902    JAL26824.1    GDIP01129802    GDIQ01053327    LRGB01002864    JAL73912.1    JAN41410.1    KZS05750.1    GDIQ01270329    JAJ81395.1    GDIQ01206425    GDIP01139361    JAK45300.1    JAL64353.1    GDIQ01247158    JAK04567.1    KQ971351    EFA07496.1    GDIQ01270245    JAJ81479.1    GDIP01252984    JAI70417.1    GDIP01231849    JAI91552.1    GDIQ01243261    JAK08464.1    GDIP01227102    JAI96299.1    GEMB01000976    JAS02167.1    GDIP01132814    JAL70900.1    GFTR01002905    JAW13521.1    EU032343    ABV44710.1    AK418220    BAN21435.1    GDIP01182801    JAJ40601.1    GDIP01212898    JAJ10504.1    GFDF01002137    JAV11947.1    GDIP01084567    JAM19148.1    GL732545    EFX80947.1    GDIQ01081264    JAN13473.1    GDIP01184254    JAJ39148.1    GDIP01132813    JAL70901.1    AJWK01020200    AJWK01020201    EU124618    ABV60336.1    GECU01012541    JAS95165.1    GDIQ01126601    JAL25125.1    GDIQ01232868    JAK18857.1    GDIP01084566    JAM19149.1    GDIP01064720    JAM38995.1    GFDF01002110    JAV11974.1    LJIG01009694    KRT82568.1    GDIQ01124903    JAL26823.1    GDIP01231848    JAI91553.1    ACPB03014878    GAHY01001583    JAA75927.1    GDIQ01232869    JAK18856.1    GEDC01017462    JAS19836.1    GECZ01008831    JAS60938.1    GEZM01097356    JAV54259.1    GEIB01000405    JAR87459.1    GDIQ01261107    JAJ90617.1    GDIQ01124904    JAL26822.1    GBGD01003197    JAC85692.1    GANO01003762    JAB56109.1    KK852686    KDR18465.1    GDIP01219150    JAJ04252.1    AXCM01000660    GDAI01001387    JAI16216.1    GDKW01001449    JAI55146.1    GGFM01006639    MBW27390.1    AK401598    BAM18220.1    NEVH01003506    PNF40476.1    GEBQ01003449    JAT36528.1    ADMH02000386    ETN66755.1    GDIQ01002304    JAN92433.1    AAAB01008944    EAA10128.4    AXCN02000628    APCN01000663    GGFL01004883    MBW69061.1   
Pfam
PF02936   COX4        + More
PF00089   Trypsin
Interpro
IPR004203   Cyt_c_oxidase_su4_fam        + More
IPR036639   Cyt_c_oxidase_su4_sf       
IPR013288   Cyt_c_oxidase_su4       
IPR009003   Peptidase_S1_PA       
IPR001254   Trypsin_dom       
SUPFAM
SSF81406   SSF81406        + More
SSF50494   SSF50494       
Gene 3D
PDB
5Z62     E-value=7.96961e-29,     Score=312

Ontologies

Topology

Length:
178
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
18.08114
Exp number, first 60 AAs:
0.00135
Total prob of N-in:
0.82520
inside
1  -  112
TMhelix
113  -  135
outside
136  -  178
 
 

Population Genetic Test Statistics

Pi
267.208198
Theta
186.81115
Tajima's D
0.658117
CLR
0.028032
CSRT
0.562121893905305
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28467696 IGDQVIIPINTYTNQFPEVR 96.55 7e-16
26822097 ITIEEK 96.00 6e-13
28467696 EWSSKDNEIIAAAK 96.00 6e-13
26822097 KITIEEK 100.00 3e-07
28467696 ASFAFSIYDFEGK 100.00 3e-07
28556443 DWSHIVDPLELVFPK 100.00 3e-07
28556443 YVDRPDFPLPAIR 100.00 0.002
28556443 YVDRPDFPLPAIR 100.00 0.002
28556443 VNPIDGLASK 100.00 0.002
28556443 ASFCQTFAEFQAPTGEWK 100.00 0.002
28556443 VNPIDGLASK 100.00 0.002
28556443 FREDTPDIK 100.00 0.002
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