SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11811
Pre Gene Modal
BGIBMGA013679
Annotation
putative_Trypsin_alpha_[Danaus_plexippus]
Location in the cell
Nuclear   Reliability : 2.25
 

Sequence

CDS
ATGGCCAGTATTGAAGTGTTCAACAAGTTTCAATGTGGCGGTTCCATCATCAAGTCTGATCTGGTCATCACCGCAGCTTCATGTTTGCAATTGGCATGGAATAATCGCTTCTTCCGAGAGAACCCAGCGTTTTTGGCCGTTCGCGTCGGCAGCACGTATTATAATGGCGGCGGTGAGGTGATACCGGTCCTTGAAGTCTATTTCCACCCCTCTTACAACCCGAAGAACTTAAGAAGCAACATTTGCTTACTAAGACTCCAGCGGAGGATCAAATTTAGGAGAAGAACTAAGAGAGTGAGAAAGATTGATATTGATAGAGAAGATAATCCTCTGCCTTTGAATACCGATGGTGTTGCCGTTGTTGGTTGGGGGGCTAAAAGGGCGAGCAACATTGTCGTCGATCCTTGGGAAAATAGATTATCCTTTTCAGTCCTTGATGTTTATCCAATGTGGGATTGTAAGGATGTGTATTCCAGTCAATACGTAACAAAGGATAACTTCTGTGCCGGTTTCCTATCAAAGGGCGGAGGCGCTTGTAATCACGACGTTGGCGGACCGGGTATTGTGAATGGCCTTTTAGCTGGTATTATCAGCTTCGGAGCTCCCGTGTGTGGTGCATCCGATGCTCCCACCGTCTTCGTCAAAGTTGGGTTTTACGCTGATTGGATAGATGAAATAATGTCGCAGGACGTTCCGCACGGGAAGAAAAGAACAACATTGAAACCTCCAGTCTACACGCACATGCCATCTTACAAGCCTGAAACTACGACTTTCATAATCGAACCGTTGAGGGAGTCCAAGTTAGAAGACGAGGTAACCATCAACAAGGAACTGCGGCAGTCGAAATCAGATAACAAGGGGTTATTCAAAGAATTCCTAAGAACGATGTTTAACGAGGAAGAAATCAAGCAATATGCTGATTTAATTGATGAAACGGAAATCGATAACGATAATATTGGTGTTAATGAAACAAAATCTGTGACAAAACTTGATTTTGAAACAAGTGAAGTGACCGAAACTTATCAAAATAAAATTACCCAAGAAATTCAAGTTAAAAGACTATCGAAGACAAATTTGATAAAACCAGTGGAAATTAGGAATACTGAAAATAAGAAAACTTCTAAATCAGATAAAAATGAAAATAAAGATTTAAAAATCACAGACGAAAATATTTTAACTTTACTTTATTTGTCTGATGACGAAAAGAAAGAAATGGCAGAACGCACAGATAACGAAAGTGGCCTAGGTATAGCAACAGATCCATTTAAAGATTTAACGTTCAGAAGTAATTCCTCAAATGCAATTAATTCGATACATAAGGACGAATTTTACGATTTAATTGCAGAAATTATTGATGAAACGGAGAAACGAACTAAAAGATGA
Protein
MASIEVFNKFQCGGSIIKSDLVITAASCLQLAWNNRFFRENPAFLAVRVGSTYYNGGGEVIPVLEVYFHPSYNPKNLRSNICLLRLQRRIKFRRRTKRVRKIDIDREDNPLPLNTDGVAVVGWGAKRASNIVVDPWENRLSFSVLDVYPMWDCKDVYSSQYVTKDNFCAGFLSKGGGACNHDVGGPGIVNGLLAGIISFGAPVCGASDAPTVFVKVGFYADWIDEIMSQDVPHGKKRTTLKPPVYTHMPSYKPETTTFIIEPLRESKLEDEVTINKELRQSKSDNKGLFKEFLRTMFNEEEIKQYADLIDETEIDNDNIGVNETKSVTKLDFETSEVTETYQNKITQEIQVKRLSKTNLIKPVEIRNTENKKTSKSDKNENKDLKITDENILTLLYLSDDEKKEMAERTDNESGLGIATDPFKDLTFRSNSSNAINSIHKDEFYDLIAEIIDETEKRTKR

Summary

Pfam
PF00089   Trypsin        + More
PF02936   COX4
Interpro
IPR009003   Peptidase_S1_PA        + More
IPR001314   Peptidase_S1A       
IPR001254   Trypsin_dom       
IPR036639   Cyt_c_oxidase_su4_sf       
IPR013288   Cyt_c_oxidase_su4       
IPR004203   Cyt_c_oxidase_su4_fam       
SUPFAM
SSF50494   SSF50494        + More
SSF81406   SSF81406       
Gene 3D
PDB
1A0J     E-value=5.95542e-17,     Score=215

Ontologies

Topology

Length:
460
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.24367
Exp number, first 60 AAs:
0.15434
Total prob of N-in:
0.01335
outside
1  -  460
 
 

Population Genetic Test Statistics

Pi
175.381699
Theta
137.464876
Tajima's D
0.774125
CLR
12.804965
CSRT
0.592120393980301
Interpretation
Uncertain
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