Gene

KWMTBOMO11810

Pre Gene Modal

BGIBMGA013666

Annotation

Cytochrome_c_oxidase_polypeptide_IV_[Operophtera_brumata]

Location

Bomo_Chr20(-):565917-570853      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.445

CDS

ATGTCGTTACTAGGTCCAAAAAGATTATTTAAATTATCTTTAAATTTAGTTAGAAGTGTTCACAATCGATGTAGGATCGGGAACAGAGACTGGGTCGGTTATGGCGTCAACGGAATGGCCAATTACAAGGACGAAGCGCAATTTCCCTTTCCAGCTGTGAGATTCAAAGAAAACACCAAAGATATCTGGGCCTTGCGCGAGAAAGAGAAGGGAGATTGGAAACTCCTCTGCTGCGAAGAGAAGAAAGCGTTATATCGTGCTTCTTTCTGTCAGACCTTCGCCGAATTTCAGCACTATACAGGAGAATGGAAACTCATCCTGGGATATTTGCTTATCGCTCTGTCTTTTCCCTTTTGGGCAATGATATTCAACCACTATTATGTATATGAACCTCTTCCCGAATCGCTGTCCAAAGAGTCACAAAAGGCTCAATTGAGGAGGATGCTGGAGTTACGCGTCAACCCAATAGACGGATTATCGTCTAAATGGGACTATGATAACGACCGATGGAAGGTAGACTACTTTTATTTTGCTCTAGATCCGTCTAGAAAACTTCGCAACCGTCACCAGAGAAGTCACGGTTAG

Protein

MSLLGPKRLFKLSLNLVRSVHNRCRIGNRDWVGYGVNGMANYKDEAQFPFPAVRFKENTKDIWALREKEKGDWKLLCCEEKKALYRASFCQTFAEFQHYTGEWKLILGYLLIALSFPFWAMIFNHYYVYEPLPESLSKESQKAQLRRMLELRVNPIDGLSSKWDYDNDRWKVDYFYFALDPSRKLRNRHQRSHG

Uniprot

H9JVV3   A0A0L7L8C7   A0A2H1VRD0   A0A2A4J0K7   A0A2A4J1T7   A0A194QBD8   + More
A0A212F4W4   A0A0N1IPP8   A0A2H1W2G2   S4P8C6   A0A212F4W2   A0A3G1T1J1   G8FVP4   E3UKJ2   Q1HQ98   A0A2A4J017   U5ERG2   A0A182R414   I4DJE2   A0A3B0ESC8   A0A2S1ZDL5   Q7Q8A2   A0A0K8TPZ8   A0A1S4GZ26   A0A182IBA7   A0A182KWH7   A0A182V8V5   M1R0B9   A0A182X686   A0A182NBB7   A0A182U0F7   A0A182T6V6   A0A0N0PDN2   A0A1W7RAP4   A0A182K4X1   A0A182LRR1   A0A182YLP4   A0A0P4WTC0   A0A182VTH4   A0A194Q5V4   A0A226DRW0   A0A182PVW9   A0A067R5A7   A0A1Y1JY77   A0A182QSJ2   A0A2M4A347   W5JUY3   A0A2M4CUP1   A0A2M4CV40   A0A2J7RI29   A0A2M4C2D4   D6WRY0   T1JMD6   A0A147B9J8   A0A084VMJ5   A0A1W4WC16   A0A182F3S2   A0A2M3ZG18   A0A0L0CDV8   A0A182J1A9   T1E9I0   A0A0T6B5A9   A0A131XVQ0   A0A2R5LH08   A0A2I9LNX1   B0WCJ9   Q4PM46   A0A1D2MHF4   A0A1Z5L5R7   A0A0P6IPI3   B2D274   K9N1H0   T1PFG2   A0A0P4YLH8   A6N9X3   E9GI31   A0A0P5T369   A0A0P5HZR2   A0A0P5BPS8   J3JWR3   A0A0P5GSH5   Q16KF6   A0A0P5N5V3   A0A0P5WDT0   A0A0P5X7S2   A0A0P5TLY1   A0A0P5HL90   A0A0P5J0B6   A0A0N7ZM61   A0A0P5PR54   W8CDW9   A0A0P5EYN5   A0A0P4YZP1   J3JXV3   A0A0P5FPC5   A0A0N8B0B2   A0A0P5I2M0   A0A0N8AQV0   A8C9W5   A0A034WLA2  

Pubmed

19121390    26227816    26354079    22118469    23622113    22651552    + More
12364791    26369729    20966253    23390104    25244985    24845553    28004739    20920257    23761445    18362917    19820115    24438588    26108605    29248469    16431279    27289101    28528879    18725333    23831752    25315136    18070662    21292972    22516182    23537049    17510324    24495485    17760985    25348373   

EMBL

BABH01038713    BABH01038714    JTDY01002265    KOB71773.1    ODYU01003960    SOQ43357.1    + More
NWSH01004166    PCG65409.1    PCG65410.1    KQ459460    KPJ00746.1    AGBW02010297    OWR48777.1    KQ460141    KPJ17485.1    ODYU01005887    SOQ47238.1    GAIX01006001    JAA86559.1    OWR48774.1    MG992407    AXY94845.1    JN082714    AER27812.1    HM449866    ADO33001.1    BABH01038715    DQ443154    DQ813501    ABF51243.1    ABG67687.1    PCG65415.1    GANO01003762    JAB56109.1    AK401410    BAM18032.1    RBVL01000247    RKO10148.1    MF374344    AWK22770.1    AAAB01008944    EAA10128.4    GDAI01001387    JAI16216.1    APCN01000663    JX847497    JX847498    AGG22607.1    KPJ17487.1    GFAH01000171    JAV48218.1    AXCM01000660    GDRN01015602    JAI67845.1    KPJ00744.1    LNIX01000014    OXA46946.1    KK852686    KDR18465.1    GEZM01097356    JAV54259.1    AXCN02000628    GGFK01001868    MBW35189.1    ADMH02000386    ETN66755.1    GGFL01004884    MBW69062.1    GGFL01004883    MBW69061.1    NEVH01003506    PNF40476.1    GGFJ01010346    MBW59487.1    KQ971351    EFA07496.1    JH431429    GEIB01000405    JAR87459.1    ATLV01014599    KE524975    KFB39189.1    GGFM01006639    MBW27390.1    JRES01000523    KNC30430.1    GAMD01001332    JAB00259.1    LJIG01009694    KRT82568.1    GEFM01005511    JAP70285.1    GGLE01004680    MBY08806.1    GFWZ01000092    MBW20082.1    DS231888    EDS43570.1    DQ066281    AAY66918.1    LJIJ01001230    ODM92437.1    GFJQ02004639    JAW02331.1    GDIQ01002304    JAN92433.1    EU574808    ACB70315.1    JQ828862    AFY10818.1    KA647424    AFP62053.1    GDIP01227102    JAI96299.1    EF633939    ABR23456.1    GL732545    EFX80947.1    GDIQ01248857    GDIQ01224116    GDIQ01097752    GDIP01134011    JAK02868.1    JAL69703.1    GDIP01145661    GDIQ01226465    JAJ77741.1    JAK25260.1    GDIP01185555    GDIQ01248856    JAJ37847.1    JAK02869.1    APGK01033474    BT127681    KB740879    KB631953    AEE62643.1    ENN78519.1    ERL87445.1    GDIQ01243261    JAK08464.1    CH477960    EAT34784.1    GDIQ01146698    JAL05028.1    GDIP01088220    JAM15495.1    GDIP01088219    JAM15496.1    GDIP01129802    GDIQ01053327    LRGB01002864    JAL73912.1    JAN41410.1    KZS05750.1    GDIQ01225362    JAK26363.1    GDIQ01253116    GDIQ01204974    GDIQ01198973    GDIP01141511    JAK46751.1    JAL62203.1    GDIP01231849    JAI91552.1    GDIQ01124902    JAL26824.1    GAMC01001216    JAC05340.1    GDIQ01270329    JAJ81395.1    GDIP01220500    JAJ02902.1    BT128075    AEE63036.1    GDIQ01251858    JAJ99866.1    GDIQ01225363    JAK26362.1    GDIQ01221317    JAK30408.1    GDIQ01251859    JAJ99865.1    EU032343    ABV44710.1    GAKP01004027    JAC54925.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053268    UP000007151    UP000053240    + More
UP000075900    UP000276569    UP000007062    UP000075840    UP000075882    UP000075903    UP000076407    UP000075884    UP000075902    UP000075901    UP000075881    UP000075883    UP000076408    UP000075920    UP000198287    UP000075885    UP000027135    UP000075886    UP000000673    UP000235965    UP000007266    UP000030765    UP000192223    UP000069272    UP000037069    UP000075880    UP000002320    UP000094527    UP000095301    UP000000305    UP000019118    UP000030742    UP000008820    UP000076858   

PRIDE

H9JVV3    Q1HQ98   

Pfam

PF02936   COX4        + More
PF00089   Trypsin

Interpro

IPR004203   Cyt_c_oxidase_su4_fam        + More
IPR036639   Cyt_c_oxidase_su4_sf       
IPR013288   Cyt_c_oxidase_su4       
IPR001254   Trypsin_dom       
IPR009003   Peptidase_S1_PA       
IPR018114   TRYPSIN_HIS       

SUPFAM

SSF81406   SSF81406        + More
SSF50494   SSF50494       

Gene 3D

1.10.442.10    

CDD

cd00922  Cyt_c_Oxidase_IV
cd00190  Tryp_SPc

ProteinModelPortal

H9JVV3   A0A0L7L8C7   A0A2H1VRD0   A0A2A4J0K7   A0A2A4J1T7   A0A194QBD8   + More
A0A212F4W4   A0A0N1IPP8   A0A2H1W2G2   S4P8C6   A0A212F4W2   A0A3G1T1J1   G8FVP4   E3UKJ2   Q1HQ98   A0A2A4J017   U5ERG2   A0A182R414   I4DJE2   A0A3B0ESC8   A0A2S1ZDL5   Q7Q8A2   A0A0K8TPZ8   A0A1S4GZ26   A0A182IBA7   A0A182KWH7   A0A182V8V5   M1R0B9   A0A182X686   A0A182NBB7   A0A182U0F7   A0A182T6V6   A0A0N0PDN2   A0A1W7RAP4   A0A182K4X1   A0A182LRR1   A0A182YLP4   A0A0P4WTC0   A0A182VTH4   A0A194Q5V4   A0A226DRW0   A0A182PVW9   A0A067R5A7   A0A1Y1JY77   A0A182QSJ2   A0A2M4A347   W5JUY3   A0A2M4CUP1   A0A2M4CV40   A0A2J7RI29   A0A2M4C2D4   D6WRY0   T1JMD6   A0A147B9J8   A0A084VMJ5   A0A1W4WC16   A0A182F3S2   A0A2M3ZG18   A0A0L0CDV8   A0A182J1A9   T1E9I0   A0A0T6B5A9   A0A131XVQ0   A0A2R5LH08   A0A2I9LNX1   B0WCJ9   Q4PM46   A0A1D2MHF4   A0A1Z5L5R7   A0A0P6IPI3   B2D274   K9N1H0   T1PFG2   A0A0P4YLH8   A6N9X3   E9GI31   A0A0P5T369   A0A0P5HZR2   A0A0P5BPS8   J3JWR3   A0A0P5GSH5   Q16KF6   A0A0P5N5V3   A0A0P5WDT0   A0A0P5X7S2   A0A0P5TLY1   A0A0P5HL90   A0A0P5J0B6   A0A0N7ZM61   A0A0P5PR54   W8CDW9   A0A0P5EYN5   A0A0P4YZP1   J3JXV3   A0A0P5FPC5   A0A0N8B0B2   A0A0P5I2M0   A0A0N8AQV0   A8C9W5   A0A034WLA2  

PDB

2Y69     E-value=2.17975e-23,     Score=266

KEGG

101741387    K02263 cytochrome c oxidase subunit 4 | (RefSeq) cytochrome c oxidase subunit 4 isoform 1, mitochond

PATHWAY

00190    Oxidative phosphorylation - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0004129   GO:0004252   GO:0005751   GO:0006123   GO:0016874   GO:0016471   GO:0016820   GO:0008270   GO:0005524   GO:0006139   GO:0019205   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR10707  

Length:

194

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.85662

Exp number, first 60 AAs:

0.00063

Total prob of N-in:

0.55391

outside

1  -  105

TMhelix

106  -  128

inside

129  -  194

 

 

Pi

189.889706

Theta

146.684332

Tajima's D

0.766522

CLR

28.187722

CSRT

0.591070446477676

Interpretation

Uncertain