SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11810
Pre Gene Modal
BGIBMGA013666
Annotation
Cytochrome_c_oxidase_polypeptide_IV_[Operophtera_brumata]
Location in the cell
Mitochondrial   Reliability : 2.445
 

Sequence

CDS
ATGTCGTTACTAGGTCCAAAAAGATTATTTAAATTATCTTTAAATTTAGTTAGAAGTGTTCACAATCGATGTAGGATCGGGAACAGAGACTGGGTCGGTTATGGCGTCAACGGAATGGCCAATTACAAGGACGAAGCGCAATTTCCCTTTCCAGCTGTGAGATTCAAAGAAAACACCAAAGATATCTGGGCCTTGCGCGAGAAAGAGAAGGGAGATTGGAAACTCCTCTGCTGCGAAGAGAAGAAAGCGTTATATCGTGCTTCTTTCTGTCAGACCTTCGCCGAATTTCAGCACTATACAGGAGAATGGAAACTCATCCTGGGATATTTGCTTATCGCTCTGTCTTTTCCCTTTTGGGCAATGATATTCAACCACTATTATGTATATGAACCTCTTCCCGAATCGCTGTCCAAAGAGTCACAAAAGGCTCAATTGAGGAGGATGCTGGAGTTACGCGTCAACCCAATAGACGGATTATCGTCTAAATGGGACTATGATAACGACCGATGGAAGGTAGACTACTTTTATTTTGCTCTAGATCCGTCTAGAAAACTTCGCAACCGTCACCAGAGAAGTCACGGTTAG
Protein
MSLLGPKRLFKLSLNLVRSVHNRCRIGNRDWVGYGVNGMANYKDEAQFPFPAVRFKENTKDIWALREKEKGDWKLLCCEEKKALYRASFCQTFAEFQHYTGEWKLILGYLLIALSFPFWAMIFNHYYVYEPLPESLSKESQKAQLRRMLELRVNPIDGLSSKWDYDNDRWKVDYFYFALDPSRKLRNRHQRSHG

Summary

EMBL
BABH01038713    BABH01038714    JTDY01002265    KOB71773.1    ODYU01003960    SOQ43357.1    + More
NWSH01004166    PCG65409.1    PCG65410.1    KQ459460    KPJ00746.1    AGBW02010297    OWR48777.1    KQ460141    KPJ17485.1    ODYU01005887    SOQ47238.1    GAIX01006001    JAA86559.1    OWR48774.1    MG992407    AXY94845.1    JN082714    AER27812.1    HM449866    ADO33001.1    BABH01038715    DQ443154    DQ813501    ABF51243.1    ABG67687.1    PCG65415.1    GANO01003762    JAB56109.1    AK401410    BAM18032.1    RBVL01000247    RKO10148.1    MF374344    AWK22770.1    AAAB01008944    EAA10128.4    GDAI01001387    JAI16216.1    APCN01000663    JX847497    JX847498    AGG22607.1    KPJ17487.1    GFAH01000171    JAV48218.1    AXCM01000660    GDRN01015602    JAI67845.1    KPJ00744.1    LNIX01000014    OXA46946.1    KK852686    KDR18465.1    GEZM01097356    JAV54259.1    AXCN02000628    GGFK01001868    MBW35189.1    ADMH02000386    ETN66755.1    GGFL01004884    MBW69062.1    GGFL01004883    MBW69061.1    NEVH01003506    PNF40476.1    GGFJ01010346    MBW59487.1    KQ971351    EFA07496.1    JH431429    GEIB01000405    JAR87459.1    ATLV01014599    KE524975    KFB39189.1    GGFM01006639    MBW27390.1    JRES01000523    KNC30430.1    GAMD01001332    JAB00259.1    LJIG01009694    KRT82568.1    GEFM01005511    JAP70285.1    GGLE01004680    MBY08806.1    GFWZ01000092    MBW20082.1    DS231888    EDS43570.1    DQ066281    AAY66918.1    LJIJ01001230    ODM92437.1    GFJQ02004639    JAW02331.1    GDIQ01002304    JAN92433.1    EU574808    ACB70315.1    JQ828862    AFY10818.1    KA647424    AFP62053.1    GDIP01227102    JAI96299.1    EF633939    ABR23456.1    GL732545    EFX80947.1    GDIQ01248857    GDIQ01224116    GDIQ01097752    GDIP01134011    JAK02868.1    JAL69703.1    GDIP01145661    GDIQ01226465    JAJ77741.1    JAK25260.1    GDIP01185555    GDIQ01248856    JAJ37847.1    JAK02869.1    APGK01033474    BT127681    KB740879    KB631953    AEE62643.1    ENN78519.1    ERL87445.1    GDIQ01243261    JAK08464.1    CH477960    EAT34784.1    GDIQ01146698    JAL05028.1    GDIP01088220    JAM15495.1    GDIP01088219    JAM15496.1    GDIP01129802    GDIQ01053327    LRGB01002864    JAL73912.1    JAN41410.1    KZS05750.1    GDIQ01225362    JAK26363.1    GDIQ01253116    GDIQ01204974    GDIQ01198973    GDIP01141511    JAK46751.1    JAL62203.1    GDIP01231849    JAI91552.1    GDIQ01124902    JAL26824.1    GAMC01001216    JAC05340.1    GDIQ01270329    JAJ81395.1    GDIP01220500    JAJ02902.1    BT128075    AEE63036.1    GDIQ01251858    JAJ99866.1    GDIQ01225363    JAK26362.1    GDIQ01221317    JAK30408.1    GDIQ01251859    JAJ99865.1    EU032343    ABV44710.1    GAKP01004027    JAC54925.1   
Pfam
PF02936   COX4        + More
PF00089   Trypsin
Interpro
IPR004203   Cyt_c_oxidase_su4_fam        + More
IPR036639   Cyt_c_oxidase_su4_sf       
IPR013288   Cyt_c_oxidase_su4       
IPR001254   Trypsin_dom       
IPR009003   Peptidase_S1_PA       
IPR018114   TRYPSIN_HIS       
SUPFAM
SSF81406   SSF81406        + More
SSF50494   SSF50494       
Gene 3D
PDB
2Y69     E-value=2.17975e-23,     Score=266

Ontologies

Topology

Length:
194
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
20.85662
Exp number, first 60 AAs:
0.00063
Total prob of N-in:
0.55391
outside
1  -  105
TMhelix
106  -  128
inside
129  -  194
 
 

Population Genetic Test Statistics

Pi
189.889706
Theta
146.684332
Tajima's D
0.766522
CLR
28.187722
CSRT
0.591070446477676
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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