Gene

KWMTBOMO11808

Pre Gene Modal

BGIBMGA013669

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_MYLIP_[Papilio_xuthus]

Location

Bomo_Chr20(-):518772-546603      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.783

CDS

ATGTTGACCAAAATGTGGTTAGTCAGTCAACCTAATTCTGTGATCTTGGAAATCAAGGTGGACCCAAATGCGATTGGTCAAGAGTGCCTTGAGAAGGTATGCGAGAAATTGGAGATCGGTGCCGAGGCAGACTATTTCGGTCTGCGCGTGTGCCCAGGATCAGGCCCCGGAAGATGGCTTAACTTGCGGAACCCCCTCGATCCGCACCGCATACCCGGAGGACGGCTAGACCTCCGCGTCAAGTTCTGGGTGCCCCCTCACCTGCTCATCAACGAACCGACGAGGCATCAGTTCTACTTGCACGCCAAACTAGACCTGACTGAAGGCAGACTTGTAGTGGCAGACTTAGAAGTCGCCAGGAGGATCGTCGCCTACATCGCGCAAGCGGAGACCGGTGACTGCACCCCAGAAATGCCACCCACCCATATCTACGAAGAGTGCAACAAAATCGGACCGCAGGGCGAAAAACCAGAGGATCATGTCGACAAAATCATCGAATACCATTGCGAGATCACCGGCATGAGAGCCTCCCAAGCGGAATACAGATTGCTTAAAGAAATATCGAAGCTAGAGTCGTTCGGGGAGGAATTGTTCTTCTGCAAGCCCGTTACGCCGCAGAACAACGCCCACAATCTGTACAGTCACTTGCTCTACCACAGACAGCAAGCCGAAGAGCCTCGCGCGAGAGATGAGCCAGAGATAGACGGTGGCGCCACAGTAGGTTGCCTGGCGACCGGTCAGAGCGTCGGCGGCTGCGGGTGTCGACTCAGCACGACATTGGTGTGGAGAAACAAAGGTCAGTAG

Protein

MLTKMWLVSQPNSVILEIKVDPNAIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNPLDPHRIPGGRLDLRVKFWVPPHLLINEPTRHQFYLHAKLDLTEGRLVVADLEVARRIVAYIAQAETGDCTPEMPPTHIYEECNKIGPQGEKPEDHVDKIIEYHCEITGMRASQAEYRLLKEISKLESFGEELFFCKPVTPQNNAHNLYSHLLYHRQQAEEPRARDEPEIDGGATVGCLATGQSVGGCGCRLSTTLVWRNKGQ

Uniprot

A0A1E1WCQ8   H9JVV6   A0A212F4X8   S4PJJ0   A0A0L7L8E2   A0A194Q5C7   + More
A0A2A4J080   A0A2H1VR87   A0A0C9RSS9   V5GIY3   A0A1B6ENX9   A0A0L7RDS0   A0A154PD19   A0A1B6JGR4   A0A3L8DV76   A0A1Y1KPM9   D6WQU2   A0A2J7PED5   A0A067R1Y1   A0A1B6C8A5   A0A2H8TRQ8   J9JUS3   A0A2S2QX12   A0A2P8Z574   A0A0P6DSZ7   A0A0P6DB12   A0A0P5TQG7   A0A0P5QC67   A0A0P5GS78   A0A0P4Z9H4   A0A0P5EZK2   A0A0P5JYW7   A0A0P5M0T7   A0A0P5JVW9   A0A0P5QZV9   E9G5D2   A0A0P5PTC9   A0A0P6HIT4   C3XU73   K1R752   A0A0P5HBR2   A0A0P5K6I6   A0A0P5GIS2   A0A0P4VRC1   A0A023F934   A0A224XQJ0   R4G4J7   A0A0V0GEK0   A0A069DU28   V3ZUC7   W5MNY7   A0A0P5IT46   A0A1A8HKU0   A0A3Q0S7L1   A0A3B5MSW1   M3ZN48   A0A3B4UBT8   A0A3B4XN47   A0A0B8RNV7   A0A3P9I1L4   A0A315UVH0   A0A3Q2PV34   A0A2D0S399   R7UFV3   V8NA87   T1D7C1   J3SDN1   A0A1S3QUF4   A0A1S3QV42   U3EQ04   A0A3B3C1C0   Q5XHJ0   A0A1L8FY32   A0A1S3QVS0   A0A3Q2V2G9   A0A3B4BJ95   A0A0A9W3Q3   Q6GPK0   A0A3P9JF19   A0A1W7RFK9   A0A1A8DEG0   A0A1S3QTW9  

Pubmed

19121390    22118469    23622113    26227816    26354079    30249741    + More
28004739    18362917    19820115    24845553    29403074    21292972    18563158    22992520    27129103    25474469    26334808    23254933    23542700    25476704    17554307    29703783    24297900    23758969    23025625    23915248    29451363    27762356    25463417    25401762    26823975    26358130   

EMBL

GDQN01006284    JAT84770.1    BABH01038709    BABH01038710    AGBW02010297    OWR48780.1    + More
GAIX01004935    JAA87625.1    JTDY01002265    KOB71772.1    KQ459460    KPJ00748.1    NWSH01004121    PCG65475.1    ODYU01003960    SOQ43361.1    GBYB01010541    JAG80308.1    GALX01004457    JAB64009.1    GECZ01030137    JAS39632.1    KQ414613    KOC69003.1    KQ434864    KZC09100.1    GECU01009306    JAS98400.1    QOIP01000003    RLU24327.1    GEZM01084036    JAV60817.1    KQ971354    EFA06019.1    NEVH01026103    PNF14672.1    KK853083    KDR11653.1    GEDC01027570    JAS09728.1    GFXV01004766    MBW16571.1    ABLF02014965    GGMS01013072    MBY82275.1    PYGN01000190    PSN51645.1    GDIQ01087757    JAN06980.1    GDIQ01079861    JAN14876.1    GDIP01123046    JAL80668.1    GDIQ01119238    JAL32488.1    GDIQ01237151    JAK14574.1    GDIP01231141    GDIP01220036    GDIQ01090706    JAJ03366.1    JAN04031.1    GDIQ01267855    JAJ83869.1    GDIQ01193311    JAK58414.1    GDIQ01162680    JAK89045.1    GDIQ01193312    JAK58413.1    GDIQ01127586    GDIP01020421    JAL24140.1    JAM83294.1    GL732532    EFX85651.1    GDIQ01125985    JAL25741.1    GDIQ01019045    JAN75692.1    GG666464    EEN68447.1    JH818173    EKC37010.1    GDIQ01230145    JAK21580.1    GDIQ01214553    JAK37172.1    GDIQ01239945    JAK11780.1    GDKW01001494    JAI55101.1    GBBI01000726    JAC17986.1    GFTR01006013    JAW10413.1    ACPB03005125    ACPB03005126    GAHY01001300    JAA76210.1    GECL01000365    JAP05759.1    GBGD01001618    JAC87271.1    KB201701    ESO95088.1    AHAT01020235    AHAT01020236    GDIQ01210693    JAK41032.1    HAEC01015825    SBQ84046.1    GBSH01003013    JAG66014.1    NHOQ01002733    PWA15156.1    AMQN01001600    KB303857    ELU02683.1    AZIM01006698    ETE58467.1    GAAZ01002819    JAA95124.1    JU176432    GBEX01003835    AFJ51955.1    JAI10725.1    GAEP01001833    GBEW01001170    JAB52988.1    JAI09195.1    BC084067    AAH84067.1    CM004476    OCT76486.1    GBHO01044863    GBHO01044860    GBHO01040537    GBRD01002335    GDHC01006070    JAF98740.1    JAF98743.1    JAG03067.1    JAG63486.1    JAQ12559.1    BC073117    AAH73117.1    GDAY02001507    JAV49920.1    HAEA01003318    SBQ31798.1   

Proteomes

UP000005204    UP000007151    UP000037510    UP000053268    UP000218220    UP000053825    + More
UP000076502    UP000279307    UP000007266    UP000235965    UP000027135    UP000007819    UP000245037    UP000000305    UP000001554    UP000005408    UP000015103    UP000030746    UP000018468    UP000261340    UP000261380    UP000002852    UP000261420    UP000261360    UP000265200    UP000265000    UP000221080    UP000014760    UP000087266    UP000261560    UP000186698    UP000264840    UP000261520   

PRIDE

H9JVV6   

Pfam

PF00373   FERM_M        + More
PF09379   FERM_N
PF09380   FERM_C
PF01559   Zein

Interpro

IPR035963   FERM_2        + More
IPR014352   FERM/acyl-CoA-bd_prot_sf       
IPR019749   Band_41_domain       
IPR018980   FERM_PH-like_C       
IPR029071   Ubiquitin-like_domsf       
IPR000299   FERM_domain       
IPR018979   FERM_N       
IPR019748   FERM_central       
IPR001841   Znf_RING       
IPR013083   Znf_RING/FYVE/PHD       
IPR011993   PH-like_dom_sf       
IPR041790   MYLIP_FERM_C       
IPR017900   4Fe4S_Fe_S_CS       
IPR000798   Ez/rad/moesin-like       
IPR002530   Zein       

SUPFAM

SSF47031   SSF47031        + More
SSF54236   SSF54236       

Gene 3D

1.20.80.10     3.30.40.10     2.30.29.30    

CDD

cd14473  FERM_B-lobe
cd13195  FERM_C_MYLIP_IDOL

ProteinModelPortal

A0A1E1WCQ8   H9JVV6   A0A212F4X8   S4PJJ0   A0A0L7L8E2   A0A194Q5C7   + More
A0A2A4J080   A0A2H1VR87   A0A0C9RSS9   V5GIY3   A0A1B6ENX9   A0A0L7RDS0   A0A154PD19   A0A1B6JGR4   A0A3L8DV76   A0A1Y1KPM9   D6WQU2   A0A2J7PED5   A0A067R1Y1   A0A1B6C8A5   A0A2H8TRQ8   J9JUS3   A0A2S2QX12   A0A2P8Z574   A0A0P6DSZ7   A0A0P6DB12   A0A0P5TQG7   A0A0P5QC67   A0A0P5GS78   A0A0P4Z9H4   A0A0P5EZK2   A0A0P5JYW7   A0A0P5M0T7   A0A0P5JVW9   A0A0P5QZV9   E9G5D2   A0A0P5PTC9   A0A0P6HIT4   C3XU73   K1R752   A0A0P5HBR2   A0A0P5K6I6   A0A0P5GIS2   A0A0P4VRC1   A0A023F934   A0A224XQJ0   R4G4J7   A0A0V0GEK0   A0A069DU28   V3ZUC7   W5MNY7   A0A0P5IT46   A0A1A8HKU0   A0A3Q0S7L1   A0A3B5MSW1   M3ZN48   A0A3B4UBT8   A0A3B4XN47   A0A0B8RNV7   A0A3P9I1L4   A0A315UVH0   A0A3Q2PV34   A0A2D0S399   R7UFV3   V8NA87   T1D7C1   J3SDN1   A0A1S3QUF4   A0A1S3QV42   U3EQ04   A0A3B3C1C0   Q5XHJ0   A0A1L8FY32   A0A1S3QVS0   A0A3Q2V2G9   A0A3B4BJ95   A0A0A9W3Q3   Q6GPK0   A0A3P9JF19   A0A1W7RFK9   A0A1A8DEG0   A0A1S3QTW9  

PDB

6D2Q     E-value=7.14441e-13,     Score=177

KEGG

101741011    K10637 E3 ubiquitin-protein ligase MYLIP [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase MYLIP

GO

GO:0005856   GO:0016874   GO:0004842   GO:0006511   GO:0016021   GO:0008092   GO:0005737   GO:0030178   GO:0007369   GO:0045735   GO:0008270   GO:0006355   GO:0005524   GO:0006139   GO:0019205   GO:0043564   GO:0006418   GO:0003824  

Length:

267

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00716

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04176

outside

1  -  267

 

 

Pi

229.740933

Theta

184.086847

Tajima's D

0.522644

CLR

0.399171

CSRT

0.522073896305185

Interpretation

Uncertain