Silkworm Genome Informatics Database

Gene

KWMTBOMO11800

Pre Gene Modal

BGIBMGA013675

Annotation

PREDICTED:_NF-X1-type_zinc_finger_protein_NFXL1?_partial_[Bombyx_mori]

Location

Bomo_Chr20(+):287034-289582 View in EpiBrowser

Location in the cell

Extracellular Reliability : 3.119

CDS

ATGTCACGAAAGTATCGAGATGCCGCTGCGTCATTGCAGCTAAGTGTTCAGAGACATCTGCAAGAATTTAGTGAACTCTCATCTTCTGAAAATGATGAACCATACGATGCTAGTGTGCTCGAGGAAGTTTTACAAAGATACTGCAAGGGTGGTGGCGATCGCCGTATGCTCAATAGGACCAAGAACATTCTAGAAGAAGCGCTTAGTGGTAATCCTATAACATGCCTCATATGTATAAGCTCTGTCAAACGAACAGATGCTATTTGGACCTGTGGGCATTGCTACTGCTATTTCCACCTCACCTGTGTGCAGAAATGGTCAATCGACAGCGTCACGCTTCGCAGTGACGAGAATGAGGGTCCTGTATCCATTGTGAAACCACAAAAAACCGAGTGGTGCTGCCCAAAACAAGTCAAGAAACCTGCCACACCCTGGGAAGCTCAACGGCCAAAAACAAAAATCACGGCATTAGACTGTCCTCCTTGTGAGACTCCGTTACAATTAATTTGCTTTGGTGAACATGAGACAGACACACAGGCATGTCATTCAGCAAAAAGAAGATCTTGTGGAAGAGAGTGCGGAAAACCTCTAACTTGTGGTAATCATAAATGTACATTGGAATGCCACCTTCTCCGTGAGGATCCTGCTTATAGAGATGTGCCATCTGTCTGCAAACCCTGTGACAAGCCTTGCTTAGTTTCTCGACCTGAGAAATGCACACACAAATGCCCAAAGGGTGCCTGTCACCCAGGTCCATGCCCTCCATGTGAGATTTTAGAAAGAGTTGCATGTCATTGCAATGTAACTGAATTATACATACGCTGCAGACAACTGTCTGTAGCTGCTGAAGATATGCTCTCTTGTAAGCAACAGTGCCCGAAGAGCTTGGTATGTGGACACCGTTGCAAAAACACATGTCATTCTGGTCCTTGCACCAATCAAATATGCACAAAGAAGACCAAAGCATATTGTGTATGTAGAAACATTAAAAAAGAGCTTCCTTGTAATTTGATTAGAAATGGTGAAACAAAAATAGAATGTGATGAATCATGTGAAAAGAAAAAACTTGCTGCTAAACTTGAAAAAGAGATGGAAGAACAACGACAAAAGAAGTTAGAGGAAGAAAAGAACAGGAGAGAGCTAGCAGAATATGAATGGAAATTGAGTGGGAAAAAGAAAAACTACAAAGAGAAGAAGATTATCCCCAATAAAGATAACAGGAACATGTTACAAAAGAACTGGATTCCGATTATATCTGTTATAGTTGTGATGTTAGCATTATGTATTTATTGTGTATTGTATAATTAA

Protein

MSRKYRDAAASLQLSVQRHLQEFSELSSSENDEPYDASVLEEVLQRYCKGGGDRRMLNRTKNILEEALSGNPITCLICISSVKRTDAIWTCGHCYCYFHLTCVQKWSIDSVTLRSDENEGPVSIVKPQKTEWCCPKQVKKPATPWEAQRPKTKITALDCPPCETPLQLICFGEHETDTQACHSAKRRSCGRECGKPLTCGNHKCTLECHLLREDPAYRDVPSVCKPCDKPCLVSRPEKCTHKCPKGACHPGPCPPCEILERVACHCNVTELYIRCRQLSVAAEDMLSCKQQCPKSLVCGHRCKNTCHSGPCTNQICTKKTKAYCVCRNIKKELPCNLIRNGETKIECDESCEKKKLAAKLEKEMEEQRQKKLEEEKNRRELAEYEWKLSGKKKNYKEKKIIPNKDNRNMLQKNWIPIISVIVVMLALCIYCVLYN

Uniprot

NA

ProteinModelPortal

NA

KEGG

101741666 K15683 NF-X1-type zinc finger protein NFXL1 | (RefSeq) NF-X1-type zinc finger protein NFXL1

GO

GO:0003700 GO:0005634 GO:0006355 GO:0008270 GO:0005524 GO:0006139 GO:0019205 GO:0043564 GO:0006418 GO:0003824

Length:

435

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.39254

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.22079

outside

1 - 413

TMhelix

414 - 433

inside

434 - 435

Pi

181.197373

Theta

152.531299

Tajima's D

0.590835

CLR

0

CSRT

0.536573171341433

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics