Silkworm Genome Informatics Database

Gene

KWMTBOMO11797

Pre Gene Modal

BGIBMGA013659

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101736480_[Bombyx_mori]

Location

Bomo_Chr20(+):169864-172491 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.908

CDS

ATGTGTTTCCGCGGCTGGGGCCTGGAGTGGCTGGAGGAGGAGGACACGCTGCGCGGAGGGCTGGAGCGGCTGGCGGCGCTGGTGGAGCGGGGGGACCTGGTGCCTGTGCTCGACAAGATCTTCGTCCCGCAGCAGTTCGAGCAGGCCCTGGCGCACGCCTGCAGCGAGGACGCCGTGGGGGCCACCGTCGTGCGCTTCCCGTAG

Protein

MCFRGWGLEWLEEEDTLRGGLERLAALVERGDLVPVLDKIFVPQQFEQALAHACSEDAVGATVVRFP

Uniprot

A0A2H1WXY7 A0A3S2P4G7 A0A2W1BQ56 A0A0F6Q2L1 A0A2A4JZT1 A0A194Q5W9 + More
A0A0N1ICJ6 A0A212EUX6 A0A182H680 A0A398BDM2 A0A0D6N261

Pubmed

28756777 26354079 22118469 26483478

EMBL

ODYU01011921 SOQ57935.1 RSAL01000025 RVE52121.1 KZ149937 PZC77118.1 + More
KP237888 AKD01741.1 NWSH01000350 PCG77154.1 KQ459460 KPJ00759.1 KQ459838 KPJ19756.1 AGBW02012275 OWR45295.1 JXUM01113469 KQ565693 KXJ70767.1 QWVS01000010 RID87704.1 BAMV01000007 GAN59790.1

Proteomes

UP000283053 UP000218220 UP000053268 UP000053240 UP000007151 UP000069940 + More
UP000249989 UP000266016 UP000032671

Pfam

PF08240   ADH_N        + More
PF12777   MT
PF00107   ADH_zinc_N

Interpro

IPR036291   NAD(P)-bd_dom_sf        + More
IPR011032   GroES-like_sf
IPR020843   PKS_ER
IPR013154   ADH_N
IPR026975   DNAH1
IPR024743   Dynein_HC_stalk
IPR026983   DHC_fam
IPR037397   RTN4I1
IPR013149   ADH_C

SUPFAM

SSF50129 SSF50129 + More
SSF51735 SSF51735

CDD

cd08248 RTN4I1

ProteinModelPortal

A0A2H1WXY7 A0A3S2P4G7 A0A2W1BQ56 A0A0F6Q2L1 A0A2A4JZT1 A0A194Q5W9 + More
A0A0N1ICJ6 A0A212EUX6 A0A182H680 A0A398BDM2 A0A0D6N261

KEGG

101736480 no KO assigned | (RefSeq) uncharacterized LOC101736480

GO

GO:0016491 GO:0016021 GO:0055114 GO:0005739

PANTHER

PTHR10676 PTHR10676:SF358

Length:

67

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00012

Total prob of N-in:

0.16159

outside

1 - 67

Pi

29.944816

Theta

28.194734

Tajima's D

0.116658

CLR

1.204176

CSRT

0.407729613519324

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics