SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11789  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013655
Annotation
PREDICTED:_agrin_[Papilio_xuthus]
Location in the cell
Extracellular   Reliability : 4.066
 

Sequence

CDS
ATGGAGTCCGGGACCTACCTCCTCGCCGCTGCTGCCCTCCTTGTCCTCGCGCCGACGAGCGAGGCAGCTCGCGACGCGTCGTGTCCTCGCATCTGCGGGCCGGCGCTGCAGGGGGAGCCCGTCTGCGCCACCGACGGGTACATCTACCCCTCGCTCTGCGAGATGAGGAAGAAGACTTGCGGGAAAGGAGTGCGGCTAGCCCCGGACCAGGGCTCATGTTCCCGCGCGCAGGGCTCCAAGTGTGACCACCGCTGCACGTCGGAGCGGGACCCGGTCTGCGGGACCAACGGACGGACCTACCTCAACCGCTGCATGCTGCAGGTCGAAATCTGCAGGCTCGGCATAGGCCTGTCTCACCTGGGCGCCTGCAACAACATCAGCGCGCACCGCGAGAACTGCCCCGTCGACTGCTCGCAGGCCCCGCTCGACGGCCCCATCTGCGGCTCCGACGGCAACGTGTACAAGAGCACGTGCCAGATGAAGCTGCTCACTTGCGGACAAGGAGTGGTCCGCACCAGCAAGAAGCACTGTCAGACGACCCGCCACTGCCGCGAGTCGTGCTGGCGGGCGGCGCGCCCCACCTGCGGCTCGGACGGGAAGCTCTACGCCAACGCGTGTCGCATGAAGGCTACTAATTGCGGCAAGCACGTGTTCGAAGTACCGATGGCGTTCTGCGTGTCACAAGAGCGCACCTCCGGGGGAGAGTCCTGCTCCACCGACTGCTCCGGAGAGAAAGAGAAACCCGTCTGTGGCTCTGATGAAAACATTTACAGGAATGAATGCGAGATGAAGATGCTAAACTGTGGGATAAACAACAGGAAGATGGTGAAGAGGGTGGACATGGAAAAGTGCAAGTCCAAAATGAACAAGTGTCTGAAGGTGAAATGTCCGAGCGACGCGGACCCCGTGTGCGGTACCGACGCTATCGTCTACGCCAACTCCTGCCACTTGAAGGTCGCCACTTGCTTACGAGGAGTTCAGCTGGCTCACTTCGGAAACTGCACGCTTCTGCCGCGCCTGGAAACCGACTGCCCCGACAACTGCGACAACGTGCTGGAGCAGCCCGTCTGCGGATCCGACGGAAACGTCTACAGGTCTGAGTGCGAGCTGCGGCGGTTGACGTGCGGGCAGCACGTGGTGGCGGTGGCGGCGTCGCACTGCCGCACCACGGCGCTCTGCCACGAGCACTGCCCCGACACGCCCGCCTTCATCTGCGGCTCCGACAACCGCTTCTACAAGAACGAGTGCCTCATGAAGAAGGAGAACTGCGGCAAGCACGTGTTCGTGGTGCCGCTGAAGCGCTGCCTGGCGCGGTTCCAGTACGCGGGCTGCGCGCGCGTGTGCCCGCCGGAGTACGACCCGGTCTGCGGGACCGACGACAAGACCTACTCCAACAAGTGCTTCCTCGAAATGGAGAATTGCCGCTCGAGGAGTCTCGTCCAAATGAAGTACCTGGGGACGTGCTCTGAGCCGATCGCGGAGGAGCCCAAGAACTATCTGTATAGAGACGCCGTAGCCTTGCAAGGCTTTGACGGTATATGTATCTGA
Protein
MESGTYLLAAAALLVLAPTSEAARDASCPRICGPALQGEPVCATDGYIYPSLCEMRKKTCGKGVRLAPDQGSCSRAQGSKCDHRCTSERDPVCGTNGRTYLNRCMLQVEICRLGIGLSHLGACNNISAHRENCPVDCSQAPLDGPICGSDGNVYKSTCQMKLLTCGQGVVRTSKKHCQTTRHCRESCWRAARPTCGSDGKLYANACRMKATNCGKHVFEVPMAFCVSQERTSGGESCSTDCSGEKEKPVCGSDENIYRNECEMKMLNCGINNRKMVKRVDMEKCKSKMNKCLKVKCPSDADPVCGTDAIVYANSCHLKVATCLRGVQLAHFGNCTLLPRLETDCPDNCDNVLEQPVCGSDGNVYRSECELRRLTCGQHVVAVAASHCRTTALCHEHCPDTPAFICGSDNRFYKNECLMKKENCGKHVFVVPLKRCLARFQYAGCARVCPPEYDPVCGTDDKTYSNKCFLEMENCRSRSLVQMKYLGTCSEPIAEEPKNYLYRDAVALQGFDGICI

Summary

EMBL
BABH01040659    RSAL01000025    RVE52107.1    KQ459460    KPJ00685.1    KZ149937    + More
PZC77106.1    NWSH01002833    PCG67466.1    ODYU01008607    SOQ52336.1    KQ971354    EFA06028.2    GEZM01067636    JAV67466.1    KQ460009    KPJ18481.1    KC282393    AGX25150.1    KQ459977    KPJ19127.1    ABLF02027290    GFXV01004284    MBW16089.1    GEBQ01019337    JAT20640.1    KQ414613    KOC69044.1    QOIP01000003    RLU24684.1    GL450410    EFN81016.1    KQ980834    KYN12387.1    JR039205    AEY58580.1    ADTU01003593    ADTU01003594    ADTU01003595    KZ288269    PBC30042.1    KQ435824    KOX72078.1    GBYB01010778    JAG80545.1    GEDC01020717    JAS16581.1    KK854310    PTY14475.1    KK107419    EZA51100.1    GL888089    EGI67698.1    KQ981261    KYN44164.1    KQ976399    KYM92674.1    KQ983089    KYQ47666.1    KQ434864    KZC09128.1    KK852816    KDR15788.1    NEVH01002141    PNF42595.1    NNAY01003137    OXU19920.1    KY031153    ATU82904.1    LJIG01002977    KRT83963.1    KQ759870    OAD62389.1    GECU01009205    JAS98501.1    DS235858    EEB19106.1    GBHO01011473    GBHO01011472    JAG32131.1    JAG32132.1    GDKW01002415    JAI54180.1    ACPB03005901    GAHY01002282    JAA75228.1    FX985364    BAX07377.1    OUUW01000009    SPP85278.1    LJIJ01000078    ODN03318.1    CH933809    EDW17721.1    CH954178    EDV50683.1    CM002912    KMY98386.1    CH379069    EAL29848.2    CH479212    EDW33255.1    CH480815    EDW40709.1    CP012525    ALC44572.1    GDHF01033011    GDHF01030485    GDHF01019503    GDHF01015848    JAI19303.1    JAI21829.1    JAI32811.1    JAI36466.1    CM000159    EDW93170.1    ALC43439.1    AE014296    AY058325    AAF50418.2    AAL13554.1    CH916366    EDV96698.1    CVRI01000042    CRK95569.1    CH940647    EDW68947.1    CH902618    EDV39595.2    UFQS01000259    UFQT01000259    SSX02165.1    SSX22542.1    ATLV01011628    KE524705    KFB36059.1    AXCM01013287    AAAB01008960    EAA11963.4    APCN01004366    CH964154    EDW79927.2    AXCN02000936    GAKP01021590    JAC37362.1    CH478329    EAT33218.1    GECZ01018700    GECZ01002630    JAS51069.1    JAS67139.1    GBYB01010775    JAG80542.1    GAMC01008613    JAB97942.1    DS232186    EDS36999.1    LNIX01000001    OXA64516.1    JXUM01132680    KQ567877    KXJ69242.1    ADMH02001519    ETN62220.1   
Pfam
PF07648   Kazal_2        + More
PF00050   Kazal_1
Interpro
IPR036058   Kazal_dom_sf        + More
IPR002350   Kazal_dom       
SUPFAM
SSF100895   SSF100895       
PDB
2P6A     E-value=8.37349e-05,     Score=111

Ontologies

Topology

SignalP
Position:   1 - 22,         Likelihood:  0.999463
 
 
Length:
515
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.1175
Exp number, first 60 AAs:
0.11726
Total prob of N-in:
0.00686
outside
1  -  515
 
 

Population Genetic Test Statistics

Pi
261.917232
Theta
208.707431
Tajima's D
1.140228
CLR
0.260488
CSRT
0.697665116744163
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
29197581 MINCGINNR 100.00 2e-12
29197581 EKPVCGSDENIYRNECEMK 96.00 5e-11
29197581 CFIEMENCR 95.65 2e-09
24093152 TTAFVVPVYGSIK 95.45 2e-09
29197581 TSGGESCSTDCSGEKEKPVCGSDENIYR 95.45 2e-09
29197581 VCPPEYDPVCGTDDK 100.00 6e-08
29197581 EKPVCGSDENIYR 100.00 7e-07
24093152 VCNGIIDSTDSK 100.00 3e-04
29197581 TTAICHEHCPDTPAFICGSDNR 100.00 3e-04
29197581 CPSDADPVCGTDAIVYANSCHIK 100.00 0.003
29197581 CTSERDPVCGTNGR 100.00 0.008
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