Silkworm Genome Informatics Database

Gene

KWMTBOMO11786

Pre Gene Modal

BGIBMGA000193

Annotation

PREDICTED:_hemicentin-2-like_[Amyelois_transitella]

Location

Bomo_Chr19(+):14777054-14788491 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.103

CDS

ATGTCAGTCTCCGCGCTCGGCGTCACGCTCGCCGTCACGCTCGGCGTCACGCTCGCTGCGCTGGTCGCCCGCGCCGGCGGCGGCTCGCTCGAAGCAGGGTCGGCGGCGACGGGCCCGAGCGTGGTGGTGTCGCACTCCGACCTCACCGAGCTGGCGGAGCTGGCCGGGGTGGTGCCGGCGTGGCGCGAGCTTTGGCTGGGCTCGCTGGACGCGCTGCACCGCGAGCCCTCCATCAACAACACGCAGGAGGACGTGCTGGCGCAGCTCGGGGCAGTCGCTTTCCTGCACTGTCCCGTCCGCAACCTCGGCGAGCGAGGGGTGTCGTGGGTTCGGCGCCGCGACTGGCACATCATCAGCTCAGGAGTGCTCATGTACACAAATGATGAACGGTTCCAGGTGCTGCACAGCGAGGGGTCGGATGATTGGATCCTGCAGATTAAGTACGTTCAGAAACGAGACAACGGAACTTACGAGTGTCAGGTGTCGACGGCGTCCGGCACGCTGTCCCGGCTGGTGCACCTGCACATCGCGGTGCCGGAAGCATTCATCCTGGGCGCCGACGAGCATCACGTGGACGCCGGCTCCACTATCAACCTCGTCTGCATCATCGAAAAGAGTCCGGTCCCGCCGCAGTACGTGTTCTGGTACCACAACTCGCGCATGATCAACTACGACGCGGCGCGCGGGGTGACGGTGCAGACCGAGCCCGGCCCCAAGACGCAGTCCGCGCTCGCCATCCGCTCGGCCGCGCCGCGACACTCCGGCAACTACACCTGCGCCGCCGCCAACACCGAGCCGGCGCACATCTACGTCTACGTCTCCGAGGGCAGTCAGTATCCGTCCCCGCACCCGTCCACCCATCCGCGCTCACCAACAACTCGCCCTCATACCGATGAGCTGTTTCTGTGTGCAGGCGACAAGATGGCGGCGACGCTGAGCAGGAGCCGGAGCGGGCGCGGGGCGGCGGGGGGCGCGGTCCTGCTCGCCAACCTGCTCGCCGCCCTGCTCGGTGTGAGGCTCGGCGCGCTCTGA

Protein

MSVSALGVTLAVTLGVTLAALVARAGGGSLEAGSAATGPSVVVSHSDLTELAELAGVVPAWRELWLGSLDALHREPSINNTQEDVLAQLGAVAFLHCPVRNLGERGVSWVRRRDWHIISSGVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYECQVSTASGTLSRLVHLHIAVPEAFILGADEHHVDAGSTINLVCIIEKSPVPPQYVFWYHNSRMINYDAARGVTVQTEPGPKTQSALAIRSAAPRHSGNYTCAAANTEPAHIYVYVSEGSQYPSPHPSTHPRSPTTRPHTDELFLCAGDKMAATLSRSRSGRGAAGGAVLLANLLAALLGVRLGAL

Uniprot

A0A2H1VCH9 A0A067QY67 A0A158NDS5 A0A195EY83 F4W811 K7J5J1 + More
A0A088ATH3 A0A154PAT5 A0A1Y1KG40 A0A2M4CJY5

Pubmed

24845553 21347285 21719571 20075255 28004739

EMBL

ODYU01001800 SOQ38496.1 KK852824 KDR15426.1 ADTU01012914 ADTU01012915 + More
ADTU01012916 ADTU01012917 ADTU01012918 ADTU01012919 ADTU01012920 ADTU01012921 ADTU01012922 ADTU01012923 KQ981906 KYN33245.1 GL887888 EGI69681.1 KQ434849 KZC08494.1 GEZM01086326 GEZM01086325 GEZM01086323 JAV59548.1 GGFL01001435 MBW65613.1

Proteomes

UP000027135 UP000005205 UP000078541 UP000007755 UP000002358 UP000005203 + More
UP000076502

Pfam

PF07679 I-set + More
PF07686 V-set

Interpro

IPR003598   Ig_sub2        + More
IPR036179   Ig-like_dom_sf
IPR037448   Zig-8
IPR003599   Ig_sub
IPR007110   Ig-like_dom
IPR013783   Ig-like_fold
IPR013098   Ig_I-set
IPR013106   Ig_V-set

SUPFAM

SSF48726 SSF48726

Gene 3D

2.60.40.10

ProteinModelPortal

A0A2H1VCH9 A0A067QY67 A0A158NDS5 A0A195EY83 F4W811 K7J5J1 + More
A0A088ATH3 A0A154PAT5 A0A1Y1KG40 A0A2M4CJY5

PDB

6EG0 E-value=7.39065e-49, Score=489

KEGG

101737585 no KO assigned | (RefSeq) uncharacterized LOC101737585

GO

GO:0016021 GO:0005515 GO:0033014 GO:0007186 GO:0005524 GO:0006139 GO:0019205 GO:0043564 GO:0006418 GO:0003824

PANTHER

PTHR23279

SignalP

Position: 1 - 25, Likelihood: 0.746044

Length:

343

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

36.84473

Exp number, first 60 AAs:

18.41726

Total prob of N-in:

0.45419

POSSIBLE N-term signal

sequence

outside

1 - 4

TMhelix

5 - 27

inside

28 - 319

TMhelix

320 - 342

outside

343 - 343

Pi

3.816938

Theta

3.054156

Tajima's D

-1.095632

CLR

10.614352

CSRT

0.11674416279186

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree