Silkworm Genome Informatics Database

Gene

KWMTBOMO11783

Annotation

ORF_B_(bases_1850-5560)_first_start_codon_at_2306_[Autographa_californica_nucleopolyhedrovirus]

Location

Bomo_Chr19(+):14599134-14604181 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.803

CDS

ATGTTAGCCCTAAGCCCACTACCGTCACAGTTGATAGAAAACAGTCAAAAGTACGAAATTAACAAAATTGAGACGGAATCTGACATAGATAAAGAACTTTGTGAAAATTTAAAGAAAATTCGTACCAGCCACATGAACGAGGAAGAAAAACGGGAAATTACCAAAATCTGCTATCAGTACCGTGACATATTCTACTCGGAAAACATTCCTTTATCGTTTACCCATACAGTAAAACACGAATTAAGACTAACCGACGACACCCCCATCTTTGTACGGAGTTATAGACAGGCTCCCCAACAACGAACAGAGATACAAAAACAGGTAGATAGTCTATTAAAACAAGGAATCATTAGGGAAAGTATCTCCCCTTGGTCGTGCCCGGTACACATTGTTCCGAAAAAACCGGATGCATCAGGAAAAGTTAAATGGAGACTTGTTATTGACTATAGAAGACTTAATGACAGAATTATAGAAGACAAGTACCCCTTACCAAACATTAACGACATCCTTGACAGATTAGGGCGCGCACAATATTTCACGACCATAGATTTAGCAAGCGGCTACCATCAATTAGAAATGCACCCTAAAGACGTAGAGAAAACAGCGTTTACTACTGAAAGAGGCCACTATGAGTTCCTAAGAATGCCTTTCGGACTAAAAAATGCCCCGAGCACTTTCCAGCGTCTTATGGACCATATACTCCGAGGTATAGACAACGTATTTATGTACTTAGATTACGTCATAATAGCCGCGACGTCCCTACAAAACCACAATGAAAAACTGAAATTAGTATTTCAGCGATTCAAAATGCATAATCTGAAAGTTCAGTTAGACAAATCAGAATTTCTACAGAAGCACGTTAACTTTCTAGGACATGAATTGACTGACCAAGGACTAAATCCTAACAAGGACAAAATTAAAGCAGTATTAAATTTCCCTATACCACAAACGCAAAAAGACATAAAAGCTTTCTTAGGCCTAGTCGGGTACTATAGGAAGTTTATTAAGGACTTCGCGAAGTTGACGAAACCTTTAACAGCATGTCTAAAAAAGAACGCAAAGGTTGAACATACAAACGAATTTTTAGACGCAGTTGATAAATGCAAACAAATTCTAACAAACGCCCCAATCCTGCAATACCCTGACTTCGACAAACCGTTTATTTTAACGACAGACGCATCTGACTTTGCTTTAGGAGCAGTACTTTCCCAAGGCAATGTGGGCTCAGATAAACCAGTAGCCTATGCCTCAAGGACATTATCAGATACTGAGATCCGTTACTCTACCATAGAGAAAGAACTGTTAGGGATAGTATGGGCAATTAAGTATTTTAGACCTTACTTATATGGCCGTAAATTTACAATTTATACGGACCATAGACCCCTTACATGGTTAATGAGTCTAAAGGACCCTAACTCTAAATTAACACGATGGAAACTAAAGTTAGCAGAGTATGATTACAAAGTTGTTTATAAAAAGGGCAAACAAAACACTAACGCAGATGCACTATCTCGAGCAAAAATTTTTCATAATAGTATAGATTCTCTAGCTGTTAATGTTGATGACAATAGTGACGACAACATAATAAATAGAATATTCGAAAACGCCCGTAGACAGGCAGAGGTAGAAACTGATGACCCGAATAACCAAGACAATGAACGTAACAATACTGACAATGACGACCAACCTTATAACAACAATGACGTAGAAATGACCAGTATCTATCCCTCTCAAATTGACGAAGAGACAGACACAAGGAGTGCAACAACAGTCGACCCCGATCAATTAGTTTCTACAAATCATACCCAACCTGATAATGAAAATAACGGTATCCCTATAATATCCGACGCTATTGATAGACAGTTGAAACAATTTTACGTTAGGTCCACACCAGGCTATACACCACGTGAGCTTTTATTCGGTCATACGGCATCCCGAAATCCATTAGAGCTATATTATCCTAAAGAATTTTATCAAGATTATGTCCTCAATCACCGCAAGAATGCAGAAGCAGTACAGGAATGTATAGCAGCCCACGTGTCTAAGAACAAAGAGCAGGTAATAGAAAAGAGAAACCAGGCAGCGGAAACAATCACGTTTAAGACCACATCTTGTTCCAGGGCCCTCATCGCAGGAGCCTTCGTACTCTACACAGCCGCCGACTTGACCCTTAATCCTATAGACAATACTAATGGCATCCTTTTGTTAAAACAAGGACAAATTTTGAAGCAGATAGACACTTTTAGTCTGGCCTGCGTATATAACGTATCGTATTTACATGAAACAACCTTAAAGCTTATGTCTTTATATGCCAGTACTAAAGCTGCTGAAGGTAACGAAGAGTTGCATAGAGCATATAAGGATCAAATAGAAAATAGTTTACATTTAATAGGGAAGAAGTTAGCATTTATTGCACCGCACCATAGATTTAGACGTGGCTTAATTAACGGTTTAGGTTCAGTAGTTAAAACTATTACAGGTAATCTGGATTATGAAGACGCTATTAAGTTTGAAAATGAATTATCTAATCTACGTAATTCAGTCCATAATATTAACACATCTCAAAAACAAACTTTATTCATAGCAAAGCACGCAGTTGAAGAATTTAGTAAACAGATCAAGTTATTAGACGAAAATCAGAAAAAGATAGGTTCAATGTTAAAAAACGCCACTTTAAGTAATAACGTAGTAATAAGCAGATTGCACTTTTTAGATTTATATATCCAAATATATTTTAGTTTGCAATTACTCTTAGATAAATTAGTTATATTAGAAGACGCCATGACCTTTGCACAACTAGAAGTAATGCATCCTAGCATTATAGCTCCACACAGTCTTATAAGTGAAATAACAGCTATTCAAAGACTTTACCAATTTAGACCCGTTGATAGAATAAGTATTAAAAATATTCATAGTATAGAGAGCTCTATTAGCGTAAAAGCGTATAGCACAAACGACGCACTAACATTCATACTAGATATCCCTTCCATAGATGAAAACCTTTATGACCTTATCCATCTATACTCCATACCAGATAAACAAAACCTCACCATTATTCCTAAATCCAAATACCTAGCACTGGGAACCAACGAGTACTCATACCTGGAGGAAGATTGCAAGAAGATCACACAAGACGTCCAACTCTGCACATCGCTGAACACCCAACCTGTGGAGAACTCTGAAGACTGCATAGTAACTCTTATAAAACACGAGAGCACAAACTGCACCCGTGCCAGGATGAACCTGAAACAAGGCAAGATCCAGAGACTAGAAGACAACAAATGGCTTATCATCTTGAAAGACGAACAAATCCTGAAATCTCGCTGCGGAAGGAAATCTGACTATAAAAAGTTGTCAGGAATATACATCGCCAGCATTACAAGCGATTGTCAAGTGGAAATATTCAACCGAACACTGAAGACAAACACGGACACTATTACAGCAGATGAAATCGTACCCATTCCCAGCGAAACCACTATTCTAGAAGGGAATATTCGCTATAACCTACAACTGAAAGATATATCTCTGGATAGCATCCATGAACTGATGGACCGGGTTGAAAACATTCAACAACCTGTCATCGACTGGCAGACTATGATGACTACCCCAAGTTGGTCAACACTGGGACTCTACCTCATTCTGATAGCAATAATCATCTGGAAGCTGTGGCAGTGGAGACAGCGACGACTACAATCAAAGAACGAGAGCCCCGAGAACACTAGCACCGAGGACGCTGCTGGAAGCTGCGGGACGCGCTTCTATCTTAAGGAGGGAGGAGTTAGGCAATCGCCCGATGCCCGTATTTGCTGA

Protein

MLALSPLPSQLIENSQKYEINKIETESDIDKELCENLKKIRTSHMNEEEKREITKICYQYRDIFYSENIPLSFTHTVKHELRLTDDTPIFVRSYRQAPQQRTEIQKQVDSLLKQGIIRESISPWSCPVHIVPKKPDASGKVKWRLVIDYRRLNDRIIEDKYPLPNINDILDRLGRAQYFTTIDLASGYHQLEMHPKDVEKTAFTTERGHYEFLRMPFGLKNAPSTFQRLMDHILRGIDNVFMYLDYVIIAATSLQNHNEKLKLVFQRFKMHNLKVQLDKSEFLQKHVNFLGHELTDQGLNPNKDKIKAVLNFPIPQTQKDIKAFLGLVGYYRKFIKDFAKLTKPLTACLKKNAKVEHTNEFLDAVDKCKQILTNAPILQYPDFDKPFILTTDASDFALGAVLSQGNVGSDKPVAYASRTLSDTEIRYSTIEKELLGIVWAIKYFRPYLYGRKFTIYTDHRPLTWLMSLKDPNSKLTRWKLKLAEYDYKVVYKKGKQNTNADALSRAKIFHNSIDSLAVNVDDNSDDNIINRIFENARRQAEVETDDPNNQDNERNNTDNDDQPYNNNDVEMTSIYPSQIDEETDTRSATTVDPDQLVSTNHTQPDNENNGIPIISDAIDRQLKQFYVRSTPGYTPRELLFGHTASRNPLELYYPKEFYQDYVLNHRKNAEAVQECIAAHVSKNKEQVIEKRNQAAETITFKTTSCSRALIAGAFVLYTAADLTLNPIDNTNGILLLKQGQILKQIDTFSLACVYNVSYLHETTLKLMSLYASTKAAEGNEELHRAYKDQIENSLHLIGKKLAFIAPHHRFRRGLINGLGSVVKTITGNLDYEDAIKFENELSNLRNSVHNINTSQKQTLFIAKHAVEEFSKQIKLLDENQKKIGSMLKNATLSNNVVISRLHFLDLYIQIYFSLQLLLDKLVILEDAMTFAQLEVMHPSIIAPHSLISEITAIQRLYQFRPVDRISIKNIHSIESSISVKAYSTNDALTFILDIPSIDENLYDLIHLYSIPDKQNLTIIPKSKYLALGTNEYSYLEEDCKKITQDVQLCTSLNTQPVENSEDCIVTLIKHESTNCTRARMNLKQGKIQRLEDNKWLIILKDEQILKSRCGRKSDYKKLSGIYIASITSDCQVEIFNRTLKTNTDTITADEIVPIPSETTILEGNIRYNLQLKDISLDSIHELMDRVENIQQPVIDWQTMMTTPSWSTLGLYLILIAIIIWKLWQWRQRRLQSKNESPENTSTEDAAGSCGTRFYLKEGGVRQSPDARIC

Uniprot

NA

ProteinModelPortal

NA

PDB

4OL8 E-value=9.82302e-77, Score=735

KEGG

NA

GO

Length:

1269

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.1885

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00015

outside

1 - 1200

TMhelix

1201 - 1223

inside

1224 - 1269

Pi

11.676493

Theta

17.209397

Tajima's D

-0.972153

CLR

16.811669

CSRT

0.139643017849108

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree