SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11781
Annotation
PREDICTED:_tudor_domain-containing_protein_5_[Amyelois_transitella]
Location in the cell
Mitochondrial   Reliability : 1.071 Nuclear   Reliability : 1.666
 

Sequence

CDS
ATGTTTTTCTACAGAACAGCGAAATCAACAGAAACAATTATGGAGGAGGATCTTCAAAAATTGAAGGGAGTCCTGCGGTCCCTTGTGGTGTCTAGTCCTACGCAAGTGGACCTACGCTCATTATTGAGGGACTACCGCAGTATGATGGGAGAGCACATACCAATAGCCAAATATGGATATCGAGATCTACTCACTTTCCTCAAAGAACGCTGCAGTGACTGTTTCTTGTTTGGAGGAGTATCAAGCAACCCTGTGCTCACTTTGATAGTTCCTGACAATCTCAAACACATCGATAAATTTGTTAGGAAGCAAAAGGCTCCCACCAATGTCAGAGTGAAAGGTAAAAGACAAAGTGTGCCAATGAATGACTTGATAGTTAATACATTCATCGCCAAAAAAGAAACAGAAATGAATCCAAACACTAAACCGAAAGCAGCCGCGACCAAAAATGTGGAAAACACTGTAGAGAAAAAAATGGTTGAACTGAAACTGACTGACAATACTGACTCAGCGGACAGCACACCTCAGCACCGAGTCAGTACCCAAGACTCGACGATTTGTTCTCAAGATGCACTACGAAGTTTTATGAGGAAGAGAATACCGGCCTATGACTGCGAAAGCAGTTGGGGTTACGAGAGTACTGGCAGGACCTCCTCGCAAGATAACGATTCCGGCAGACAGTCTTCTTCAAGTACGAGCAGTTCAAAGTTGGTTAAATTGGAAAATTTGAAGAGAGAAATTTACGATCTGGTAGCGGAACATCCGGAAGGCATCTGGTGCACGGACCTGATAGGGTTGTACAGGGATCGCTACAAGAAGGAGTTGAACTTCACACGTTACGGGTATACGAGCATCATCAGCTTGGTGTACGCTCTGGAGAGCATACACGCGAGCCGGCCCCACGACACGGGCGACTGGCTGCTGAGTCTGTCGGCCCCCGCCCCCGCGCCCCCCGCCCGCGCCCCCGCCCCCGCCCCCGCCCCCGCCCCGCCGCGCGCCCGCCCCCCGCGCCGCGCGCACGTGGACCCCGAGGACGCGCTGCCTGGCATCGAATTTGACCCGGACGTGTTCCCGTCGGACTGTCTGCAGTACATGGAGAGCGTGCCGCCGCCCGGGCCGTGCGCGGAGCCCGGGGCGCTGCTCGAGGTGCTGGTGGGGGAGGTGTACTCCCCTTCGCACTTTTGGCTCATCCGGCTCGGGGACCACTACAACATTGCCATGGAGAACATCATGGACGAAATGAACGCGTACTACGGGGCGGGCGGCGCGGGCGAGGCGCGGCGGCTGGCGGCGGGCGCCGTGCGGGCGGGCCACTACGTCGCCGCGCTGTACGCCGCGCACTGGCACCGCGCGCTCATCGTGCAGCTGCTGGACGCCGACCTGGTCAAGGTGCGGCACGTGGACTACGGCACGGTGAGCCGCGCGCGCGTGGCCGAGCTGCGGCCGCTGCGGCGCGCGTGGGGCTCGCTGCCCGCGCAGGCGTGGCGCGCCCGCCTGGCCGGCGCCCGGCCCGCCGCCCGGGGCCGCCGCTGGCCGCGCCCCGCCGCCGCGCACTTCCTAAACCTCGTGCGGGACACGCCCTTCGTGGCGCACGTCGTGGCCGTGGACCACCAGGAGAACATCATGGAGGTGTTCCTGATCGACACCAGTGGCGAGGAGGACGTGTGCGTGACGGGCGAGCTGGTGAAGTCCGGGCACGCCGAGCCCCGCGCCGACTCCGCGCTCACGACGCCCGAGACCTACCTGTACCCGGTATTCGAGGCGCTCGAGTCCGGAGACACGCCCAACTACGAGGACATCCACCGGTATCTGCGCGACGGGATCGACCTTGACTATGTGGAGGCTTACCGCCGCCACGTGCCCGTGGACAGGCCGCCCACGCCGCCGCCCCCCGCGCCCCCGTCGCCCCCGCCGCCACCCCCGCCACCCCCGCCCCTCCTCTGGCCTCCCTGTGTGCCTCCCTTCCTTTTTCTGCACAACATACAGCCCCCGCCCGGCTTCGAACCGCTCTGA
Protein
MFFYRTAKSTETIMEEDLQKLKGVLRSLVVSSPTQVDLRSLLRDYRSMMGEHIPIAKYGYRDLLTFLKERCSDCFLFGGVSSNPVLTLIVPDNLKHIDKFVRKQKAPTNVRVKGKRQSVPMNDLIVNTFIAKKETEMNPNTKPKAAATKNVENTVEKKMVELKLTDNTDSADSTPQHRVSTQDSTICSQDALRSFMRKRIPAYDCESSWGYESTGRTSSQDNDSGRQSSSSTSSSKLVKLENLKREIYDLVAEHPEGIWCTDLIGLYRDRYKKELNFTRYGYTSIISLVYALESIHASRPHDTGDWLLSLSAPAPAPPARAPAPAPAPAPPRARPPRRAHVDPEDALPGIEFDPDVFPSDCLQYMESVPPPGPCAEPGALLEVLVGEVYSPSHFWLIRLGDHYNIAMENIMDEMNAYYGAGGAGEARRLAAGAVRAGHYVAALYAAHWHRALIVQLLDADLVKVRHVDYGTVSRARVAELRPLRRAWGSLPAQAWRARLAGARPAARGRRWPRPAAAHFLNLVRDTPFVAHVVAVDHQENIMEVFLIDTSGEEDVCVTGELVKSGHAEPRADSALTTPETYLYPVFEALESGDTPNYEDIHRYLRDGIDLDYVEAYRRHVPVDRPPTPPPPAPPSPPPPPPPPPPLLWPPCVPPFLFLHNIQPPPGFEPL

Summary

Pfam
PF12872   OST-HTH        + More
PF00567   TUDOR
Interpro
IPR035437   SNase_OB-fold_sf        + More
IPR041966   LOTUS-like       
IPR025605   OST-HTH/LOTUS_dom       
IPR002999   Tudor       
Gene 3D
PDB
3S93     E-value=0.0139271,     Score=93

Ontologies

Topology

Length:
670
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.24599
Exp number, first 60 AAs:
0.00093
Total prob of N-in:
0.01276
outside
1  -  670
 
 

Population Genetic Test Statistics

Pi
2.926416
Theta
12.437081
Tajima's D
-0.773047
CLR
0.347098
CSRT
0.177091145442728
Interpretation
Uncertain
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