Silkworm Genome Informatics Database

Gene

KWMTBOMO11779

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_cactin_[Bombyx_mori]

Location

Bomo_Chr19(+):14554851-14565666 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.863

CDS

ATGCCCCTAGGCCGCAGATCAAATCAAATAATAAATATGTCTTCAAGAACTGATACACGTCGTATCGAAAGATCACGGAGTCATTCGGTGGAACGATACCAAGAACGTAAAGATAGCAGAAGGTCCAGGAGTCGATCATCCAGTCACAAGACTCACAGGTCAAAGTCGCTCACGTCCAAACAGAGTTCTACAAGCAGAGAAAAAAAGCGTAAAAAGACTAAGAAAAAGAAAAGACACTCTTCTAGCAGCAGCAGTAGTAGTAGTAGTTCTAGTGACAGCAATGAAGAAGAATTGAATTTCTTGCAAAAACTGGAGGCCGAAAGACAAAGACTCAAAGAAGAGAAACGTAAACAGAAAGAGATGCTCAAAGCGAAGGAAACTCCTGAGGAGAAAAGGGAGAGGCGTCTTCGTGAAAAGCAAGAAAAAGAAAGGAAACGCCGCGAGCGTATGGGCTGGGACAATGAGTACCAATGCTACACTAACCAAGACAACCCATTTGGAGACTCTGCACTGACCAATACATTTGTCTGGGCTAAAAAACTTGCTAAAGAAGGTGTGAAAAATGTATCCAGAGAAGAACTTGAAGCTTTGAATAGACAGAAACAATTAGAAAATAAGATTGAATTGGAAAAGGTGAAGCAGCGCCGCTTGGAGCGCGAGGCGGAGCGCGCAGCCCGAGAGGCGGAGGCCGGGGCGGCGGCGCGCGCTCGTGAGGCCGCGCAGTTCCACAGCTGGGCGCGCCACGAGGATGCCTTCCATTTGCACCAGGCCACCCTGCGCACGCAGATAAGGATCCGGGATGGACGAGCGAAGCCGATAGACCTGCTGGCGTGGTATGTGAGCTCAGAGGAGTGCGTGGATGCTCTGGAGATGCACGAGCCCTACACCTACCTCAACGGGCTGCAGATGCAAGACCTCGAGGACTTGCTCGAAGACATCAAGGTTTACAAAGAGTTGGAGAAGGAATCTAACCAGTCGTACTGGGAGGACGTGCAGACCATCGTGCTGGACGAGCTGGGCAAGCTGCGCACCGTGGCCGCGCCCTCCGCGCGCAGGGACGGCGTGCACAGGGCCGTCGCCGATGACGTCACACAAATCTTCAAAGGCAAGACCGGAGCTCAGCTGGAGGCGCTGCAGACGCAGATAGAGCAGAAGATATCCGGCAGGAGAGACGGCGTCGACATCGGGTACTGGGAGAGCTTGCTTAGCCAGCTGAAAGCGCACCGCGCGCGCGCCCGCCTGCGCGAGCGGCACCGACACAACCTGCGCCGCAAGCTGCAGCTGCTCAAGCGCGAGCAGGGCGTCGCCCCCGCGCCCCGCGCCCCCGCCAGCCCCGAGCCCGCGCAGCCCGACGGCGGGGGGGCCGCGCCCGACGGCGGGGGGGCCGCGCCCGACGGCGGGGGGACCGCGCCCGAGGCCGAGGGGGACGAGCACGAGGAGGAGGAGGAGGAGTGCGTGTCGCTGTACCGGTCGGGTCGGTACTCGCCCGCGCTGCTGACGGACCGCGACCTCGAGCCCGCCACGCTGCTCACCGAGCCGCTGGCGGACCTGCAGCGCCTGCACTACCTGCGCGCCGCGCGGACCCGGGGCCGCGCCCCCGCGGGACGACCAGAAGGCAGCTCGGCGGGGCCGGGAGCGGGCGGAGGGGCGGAGTCTCTGGAGGCGGAGGCCCGGCGCGCCATGGGCGCCCCCGCACCGGACACGGCGCCCTTCGCCCTGGAGCACGCGCTGCCGGACCAGCCCTGTCTGTGGGCCGACAAGTACAGGCCCAGGAAACCGAGATACTTCAACAGAGTCCACACCGGCTTCGAGTGGAACAAATACAACCAGACCCACTACGACATGGACAACCCTCCCCCGAAGATCGTCCAGGGATACAAATTCAACATATTCTATCCGGACCTCATCGACAAAAACTCGACACCGGAGTTTTCTCTCAAGCCGTGCCCCGAGAACGCGGAGTTCGCAGTGCTGCGGTTTCACGCCGGCCCCCCCTACGAGGACATCGCCTTCAAGATCGTCAACCGCGAGTGGGAGTACTCCTACAAGCGAGGCTTCCGCTGTCACTTCCACAACAACATCTTTCAACTTTGGTTTCATTTCAAGAGATATCGGTATAGACGCTAG

Protein

MPLGRRSNQIINMSSRTDTRRIERSRSHSVERYQERKDSRRSRSRSSSHKTHRSKSLTSKQSSTSREKKRKKTKKKKRHSSSSSSSSSSSSDSNEEELNFLQKLEAERQRLKEEKRKQKEMLKAKETPEEKRERRLREKQEKERKRRERMGWDNEYQCYTNQDNPFGDSALTNTFVWAKKLAKEGVKNVSREELEALNRQKQLENKIELEKVKQRRLEREAERAAREAEAGAAARAREAAQFHSWARHEDAFHLHQATLRTQIRIRDGRAKPIDLLAWYVSSEECVDALEMHEPYTYLNGLQMQDLEDLLEDIKVYKELEKESNQSYWEDVQTIVLDELGKLRTVAAPSARRDGVHRAVADDVTQIFKGKTGAQLEALQTQIEQKISGRRDGVDIGYWESLLSQLKAHRARARLRERHRHNLRRKLQLLKREQGVAPAPRAPASPEPAQPDGGGAAPDGGGAAPDGGGTAPEAEGDEHEEEEEECVSLYRSGRYSPALLTDRDLEPATLLTEPLADLQRLHYLRAARTRGRAPAGRPEGSSAGPGAGGGAESLEAEARRAMGAPAPDTAPFALEHALPDQPCLWADKYRPRKPRYFNRVHTGFEWNKYNQTHYDMDNPPPKIVQGYKFNIFYPDLIDKNSTPEFSLKPCPENAEFAVLRFHAGPPYEDIAFKIVNREWEYSYKRGFRCHFHNNIFQLWFHFKRYRYRR

Uniprot

A0A194QYK8 A0A0L7R258 A0A0J7KUQ8 A0A026VYB6 A0A158NHV7 A0A151WR20 + More
A0A195EG88 F4X3C4 A0A1B6D1W8 A0A1B0GHV9 A0A232F0S0 E0VQ28 A0A2A3EKF2 E2AVA0 A0A195AX06 A0A1V9X0S0

Pubmed

26354079 24508170 30249741 21347285 21719571 28648823 + More
20566863 20798317 28327890

EMBL

KQ460949 KPJ10379.1 KQ414667 KOC64856.1 LBMM01002919 KMQ94182.1 + More
KK107770 QOIP01000012 EZA47859.1 RLU15765.1 ADTU01016074 KQ982813 KYQ50290.1 KQ978957 KYN27253.1 GL888609 EGI59105.1 GEDC01017607 JAS19691.1 AJWK01005695 NNAY01001341 OXU24305.1 DS235389 EEB15484.1 KZ288229 PBC31659.1 GL443059 EFN62654.1 KQ976725 KYM76580.1 MNPL01029719 OQR67170.1

Proteomes

UP000053240 UP000053825 UP000036403 UP000053097 UP000279307 UP000005205 + More
UP000075809 UP000078492 UP000007755 UP000092461 UP000215335 UP000009046 UP000242457 UP000000311 UP000078540 UP000192247

Pfam

PF09732 CactinC_cactus + More
PF10312 Cactin_mid

Interpro

IPR018816 Cactin_central + More
IPR019134 Cactin_C

ProteinModelPortal

A0A194QYK8 A0A0L7R258 A0A0J7KUQ8 A0A026VYB6 A0A158NHV7 A0A151WR20 + More
A0A195EG88 F4X3C4 A0A1B6D1W8 A0A1B0GHV9 A0A232F0S0 E0VQ28 A0A2A3EKF2 E2AVA0 A0A195AX06 A0A1V9X0S0

PDB

6QDV E-value=2.22141e-59, Score=583

KEGG

101739240 no KO assigned | (RefSeq) cactin

GO

GO:0005515 GO:0008270 GO:0006468 GO:0016567 GO:0005524 GO:0006139 GO:0019205 GO:0043564 GO:0006418 GO:0003824

Length:

708

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00105

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00144

outside

1 - 708

Pi

6.361022

Theta

13.858635

Tajima's D

-0.792064

CLR

0.258169

CSRT

0.177291135443228

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics