Gene

KWMTBOMO11773

Pre Gene Modal

BGIBMGA000200

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_hrd-like_protein_1_[Amyelois_transitella]

Location

Bomo_Chr19(-):14448988-14476410      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.174

CDS

ATGCCCGGGACTTTAGTAGACAGGCTGCCCTTGCCGAATCTCAAGGTTTACACAGCGGGAAGTGTTTTACTTCTTTCAATAGCTGTCTATCATGCCACGATTGTGACTAGTGATCCAAACTGGCGCGCCAATATCACTCTACAGCGTCAGGAAGCATTGGCTGAGCCTGATGGAGAGGCGCAGCTGGTAGACCAAGCTGAAGTAATGCCGGCGCTAAACCTGAATGCCACCAGGAACTTGAACGAGCGCATGGTGGTAATAATAACCTTCATGATGCAGGAACCGCTTTGTATGTGGACATTAATAAACATAGCGTACTGCTTCCTCGCCGTCTTCGGTTTCCTGATCCAGCGCGTCGTCTTCGGTCAGCTCCGGGTCTCTGAGGCTCAGCGCGTCAAGGACAAGTTCTGGAACTATGTCTTCTACAAATTCATCTTCATCTTCGGAGTAATCAACGTTCAGTACATGGACGAGGTGATGCTGTGGTGTTCTTGGTTTACTCTCGTCGGCTTCCTGCACCTGATGGGGCAGCTGTGCAAGGATCGATTTGAATATCTAGCGTCGTCGCCCAACACAGCACGTTGGGTGCATGTTCGACTGGTCGGTCTACTCCTGGGTATACTGGCCGCCTCCACTGCCTTATTGGGCGTTGCAGTCGCATGGGGCTTGCCCGCCGGAAAGGATACTTTCGCGTTTATGGCTGCTGAATGCCTGCTGGTGCTGATGTCGGTGCTGCACGTGGGCGCGCGCTACGTGCTGCAGCAGCGCGGCGCGGACGCGGCCGGCGCGCTCGCCTACTACACGCACCTCGGCTTCGATTCGGCGTCCCTTGTGCTCGAGCTGATGCACGTGGTCCACATGGTGGTGTACAGCAACATGTTGGTGTCGATGGCGTCGCTGGTGCTGCTCATGCAGCTCCGCCACCTGCTGCACGAGCTGCAGGCGCGGCTGCGGAGGCACCGCCTCTACACATCGCTCGCGGACCACATGAGTCGCAATTACCCAATGGCAAGCAAAGAGGAGGTTGAAAAGAATCAAGACAATTGTGCAATCTGCTGGGAACCGATGAAGGAAGCTAGGAAACTGCCCTGTTCTCATCTCTTCCACAACTCGTGCCTATGCCAGTGGGTGCAGCAGGACGCGTCGTGCCCCACGTGCCGCCGCGGCCTCGCACACGGCGCGCCCCCGCCCCCGCCCCCAACCCCGCCGCACAACCACCTCTTCCACTTCGACGGCTCCCGCTACGTGTCGTGGCTGCCCAGCTTCTCCGTGGAGGTGACCCGCGCCCGGCCCTCCGCCGCGCAGCTGGACGCCATGGTGGCGCAGGTGCTGGGCATGTTCCCGCAGGCTGACCCCGCCGCCCTGCGCGCCGACCTGCTGCTCACCCGCTCCGCGCACCTCACGCTCGACAACATCCTCGAGGGCAGGCTGCAGCCGCCCGCAGAAGCACCGACAGTAAGACCGATCTCGCCCCTCGAGGCGCCCCCCGCCCCGGAGCCCGCGCCCCCCGCTCCGGAGCCTGCGCCCCCCGCCGCGGAGCCCGGCCTGGACAATCTAGACGTCGGGTCGACCAGCGCTATATTCTCGAGAAACGCGCCCGAACGAGAACAGAACCTGAGACGCAGGAAGGAGATGCTGGTGGCGGCGGCGCGCAGGCGGTACCTCGAGCGGCGCGGCGAGGCGGCGCCACCACGCAGCTGA

Protein

MPGTLVDRLPLPNLKVYTAGSVLLLSIAVYHATIVTSDPNWRANITLQRQEALAEPDGEAQLVDQAEVMPALNLNATRNLNERMVVIITFMMQEPLCMWTLINIAYCFLAVFGFLIQRVVFGQLRVSEAQRVKDKFWNYVFYKFIFIFGVINVQYMDEVMLWCSWFTLVGFLHLMGQLCKDRFEYLASSPNTARWVHVRLVGLLLGILAASTALLGVAVAWGLPAGKDTFAFMAAECLLVLMSVLHVGARYVLQQRGADAAGALAYYTHLGFDSASLVLELMHVVHMVVYSNMLVSMASLVLLMQLRHLLHELQARLRRHRLYTSLADHMSRNYPMASKEEVEKNQDNCAICWEPMKEARKLPCSHLFHNSCLCQWVQQDASCPTCRRGLAHGAPPPPPPTPPHNHLFHFDGSRYVSWLPSFSVEVTRARPSAAQLDAMVAQVLGMFPQADPAALRADLLLTRSAHLTLDNILEGRLQPPAEAPTVRPISPLEAPPAPEPAPPAPEPAPPAAEPGLDNLDVGSTSAIFSRNAPEREQNLRRRKEMLVAAARRRYLERRGEAAPPRS

Uniprot

A0A2W1BZ63   A0A194PP26   A0A2J7PI11   A0A1B6GPE6   A0A1B6IRM5   A0A067RD56   + More
D6WPF0   A0A212EJZ6   A0A1B6E6P4   A0A1Y1L8E1   V9IK44   A0A0M8ZQ75   A0A1Z5LFT8   A0A0T6BAV7   A0A293LCR4   A0A1L8DSF2   A0A1L8DSA8   A0A1Z5L2N8   A0A2R5LBR3   A0A131YXB9   A0A224YUB1   A0A151X5K0   A0A0L7R0D4   A0A2I9LNQ8   A0A147BG56   A0A026WKE0   A0A023FD51   A0A195DRL1   E2BPI8   A0A195EVS6   F4X271   A0A158NAK6   A0A0C9QYI7   A0A154P018   A0A151I5L2   A0A2L2YAK7   A0A3S3RXK0   A0A1B0CQX2   A0A195CKY1   A0A2L2YAN4   E2AQ20   A0NBH3   A0A182VH83   A0A1S4FBV4   A0A182I3F8   A0A182KRH9   A0A182X3L2   A0A182JXT7   A0A182MUQ9   A0A182PHA0   A0A182RQU7   A0A182NH56   E0VWC3   A0A2T7NHV8   A0A182WJ39   A0A182TYE5   A0A182ITR8   A0A084WNG9   A0A0B6ZKM6   A0A1J1IVN0   A0A182GRD0   A0A1J1IV99   A0A1J1ITR1   V4A3Q5   A0A2S2P476   A0A0J7KT07   A0A182XZ10   T1K617   A0A2H8TVI2   A0A131XRB8   A0A1E1XGW7   A0A210PE59   A0A0P4WFY5   A0A2M4A0A2   A0A2M3ZZY8   A0A2M4BF85   A0A2M4A006   L7LVN6   A0A2M4BE04   W5JKV9   A0A3N0ZAF8   A0A131XGZ5   A0A2M4BD30   A0A0L8IB18   L7LVP1   A0A2M3YZ65   A0A336LCW4   A0A182QGD4   A0A3Q2Z4E2   W5MJ61   W5LEF5   H2T7H6   C3YFB3   A0A3S1AZB3   A0A3Q1J470   A0A3B3ZZ38   A0A336MZK3   A0A0P7VGX5  

Pubmed

28756777    26354079    24845553    18362917    19820115    22118469    + More
28004739    28528879    26830274    28797301    29248469    29652888    24508170    30249741    20798317    21719571    21347285    26561354    12364791    14747013    17210077    20966253    20566863    24438588    26483478    23254933    25244985    28503490    28812685    25576852    20920257    23761445    28049606    25329095    21551351    18563158    25463417   

EMBL

KZ149915    PZC77976.1    KQ459598    KPI94499.1    NEVH01025130    PNF15964.1    + More
GECZ01005489    JAS64280.1    GECU01018121    JAS89585.1    KK852779    KDR16690.1    KQ971354    EFA06236.2    AGBW02014361    OWR41801.1    GEDC01012053    GEDC01003719    JAS25245.1    JAS33579.1    GEZM01062288    JAV69864.1    JR051098    AEY61430.1    KQ436240    KOX67339.1    GFJQ02000714    JAW06256.1    LJIG01002491    KRT84449.1    GFWV01000888    MAA25618.1    GFDF01004715    JAV09369.1    GFDF01004716    JAV09368.1    GFJQ02005415    JAW01555.1    GGLE01002783    MBY06909.1    GEDV01005986    JAP82571.1    GFPF01006264    MAA17410.1    KQ982519    KYQ55559.1    KQ414670    KOC64298.1    GFWZ01000035    MBW20025.1    GEGO01006129    JAR89275.1    KK107167    QOIP01000010    EZA56448.1    RLU17981.1    GBBK01005217    JAC19265.1    KQ980612    KYN15139.1    GL449633    EFN82392.1    KQ981954    KYN32246.1    GL888565    EGI59487.1    ADTU01010349    ADTU01010350    GBYB01008839    JAG78606.1    KQ434781    KZC04470.1    KQ976413    KYM90384.1    IAAA01010159    IAAA01010160    IAAA01010161    LAA05199.1    NCKU01003566    NCKU01003419    RWS07281.1    RWS07546.1    AJWK01024174    AJWK01024175    AJWK01024176    AJWK01024177    AJWK01024178    AJWK01024179    AJWK01024180    AJWK01024181    AJWK01024182    AJWK01024183    KQ977642    KYN01112.1    IAAA01010162    LAA05204.1    GL441651    EFN64463.1    AAAB01008807    EAU77606.2    APCN01000208    AXCM01000681    DS235818    EEB17679.1    PZQS01000012    PVD20759.1    ATLV01024602    KE525352    KFB51763.1    HACG01022201    HACG01022203    HACG01022204    CEK69066.1    CEK69068.1    CEK69069.1    CVRI01000059    CRL03636.1    JXUM01082259    JXUM01082260    KQ563300    KXJ74101.1    CRL03634.1    CRL03635.1    KB202823    ESO87841.1    GGMR01011650    MBY24269.1    LBMM01003442    KMQ93532.1    CAEY01001591    GFXV01006470    MBW18275.1    GEFM01005912    JAP69884.1    GFAC01000907    JAT98281.1    NEDP02076750    OWF34775.1    GDRN01025825    JAI67701.1    GGFK01000747    MBW34068.1    GGFK01000721    MBW34042.1    GGFJ01002575    MBW51716.1    GGFK01000760    MBW34081.1    GACK01009164    JAA55870.1    GGFJ01002050    MBW51191.1    ADMH02001258    ETN63394.1    RJVU01000976    ROL55363.1    GEFH01002929    JAP65652.1    GGFJ01001776    MBW50917.1    KQ416096    KOF98686.1    GACK01009159    JAA55875.1    GGFM01000813    MBW21564.1    UFQS01001660    UFQT01001660    SSX11774.1    SSX31339.1    AXCN02000876    AHAT01020910    AHAT01020911    GG666509    EEN60876.1    RQTK01000693    RUS76010.1    SSX11773.1    SSX31338.1    JARO02001669    KPP74766.1   

Proteomes

UP000053268    UP000235965    UP000027135    UP000007266    UP000007151    UP000053105    + More
UP000075809    UP000053825    UP000053097    UP000279307    UP000078492    UP000008237    UP000078541    UP000007755    UP000005205    UP000076502    UP000078540    UP000285301    UP000092461    UP000078542    UP000000311    UP000007062    UP000075903    UP000075840    UP000075882    UP000076407    UP000075881    UP000075883    UP000075885    UP000075900    UP000075884    UP000009046    UP000245119    UP000075920    UP000075902    UP000075880    UP000030765    UP000183832    UP000069940    UP000249989    UP000030746    UP000036403    UP000076408    UP000015104    UP000242188    UP000000673    UP000053454    UP000075886    UP000264820    UP000018468    UP000018467    UP000005226    UP000001554    UP000271974    UP000265040    UP000261520    UP000034805   

Pfam

PF13639   zf-RING_2        + More
PF02845   CUE
PF18442   G2BR
PF09298   FAA_hydrolase_N
PF01557   FAA_hydrolase
PF12796   Ank_2
PF00100   Zona_pellucida

Interpro

IPR001841   Znf_RING        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR003892   CUE       
IPR040675   AMFR_Ube2g2-bd       
IPR036462   Fumarylacetoacetase_N_sf       
IPR005959   Fumarylacetoacetase       
IPR015377   Fumarylacetoacetase_N       
IPR036663   Fumarylacetoacetase_C_sf       
IPR011234   Fumarylacetoacetase-like_C       
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR002110   Ankyrin_rpt       
IPR001507   ZP_dom       

SUPFAM

SSF63433   SSF63433        + More
SSF56529   SSF56529       
SSF48403   SSF48403       

Gene 3D

3.30.40.10     2.30.30.230     3.90.850.10     1.25.40.20    

CDD

cd00204  ANK

ProteinModelPortal

A0A2W1BZ63   A0A194PP26   A0A2J7PI11   A0A1B6GPE6   A0A1B6IRM5   A0A067RD56   + More
D6WPF0   A0A212EJZ6   A0A1B6E6P4   A0A1Y1L8E1   V9IK44   A0A0M8ZQ75   A0A1Z5LFT8   A0A0T6BAV7   A0A293LCR4   A0A1L8DSF2   A0A1L8DSA8   A0A1Z5L2N8   A0A2R5LBR3   A0A131YXB9   A0A224YUB1   A0A151X5K0   A0A0L7R0D4   A0A2I9LNQ8   A0A147BG56   A0A026WKE0   A0A023FD51   A0A195DRL1   E2BPI8   A0A195EVS6   F4X271   A0A158NAK6   A0A0C9QYI7   A0A154P018   A0A151I5L2   A0A2L2YAK7   A0A3S3RXK0   A0A1B0CQX2   A0A195CKY1   A0A2L2YAN4   E2AQ20   A0NBH3   A0A182VH83   A0A1S4FBV4   A0A182I3F8   A0A182KRH9   A0A182X3L2   A0A182JXT7   A0A182MUQ9   A0A182PHA0   A0A182RQU7   A0A182NH56   E0VWC3   A0A2T7NHV8   A0A182WJ39   A0A182TYE5   A0A182ITR8   A0A084WNG9   A0A0B6ZKM6   A0A1J1IVN0   A0A182GRD0   A0A1J1IV99   A0A1J1ITR1   V4A3Q5   A0A2S2P476   A0A0J7KT07   A0A182XZ10   T1K617   A0A2H8TVI2   A0A131XRB8   A0A1E1XGW7   A0A210PE59   A0A0P4WFY5   A0A2M4A0A2   A0A2M3ZZY8   A0A2M4BF85   A0A2M4A006   L7LVN6   A0A2M4BE04   W5JKV9   A0A3N0ZAF8   A0A131XGZ5   A0A2M4BD30   A0A0L8IB18   L7LVP1   A0A2M3YZ65   A0A336LCW4   A0A182QGD4   A0A3Q2Z4E2   W5MJ61   W5LEF5   H2T7H6   C3YFB3   A0A3S1AZB3   A0A3Q1J470   A0A3B3ZZ38   A0A336MZK3   A0A0P7VGX5  

PDB

2LXH     E-value=1.13857e-18,     Score=231

KEGG

101737157    K10636 autocrine motility factor receptor [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase AMFR-

PATHWAY

04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016874   GO:0061630   GO:0030433   GO:0006511   GO:0030968   GO:0016567   GO:0070936   GO:0005829   GO:0005783   GO:0000151   GO:0000209   GO:0034976   GO:0005515   GO:0008270   GO:0005524   GO:0006139   GO:0019205   GO:0043564   GO:0006418   GO:0003824  

Length:

566

Number of predicted TMHs:

7

Exp number of AAs in TMHs:

147.24887

Exp number, first 60 AAs:

20.21114

Total prob of N-in:

0.87635

POSSIBLE N-term signal

sequence

inside

1  -  12

TMhelix

13  -  35

outside

36  -  98

TMhelix

99  -  116

inside

117  -  135

TMhelix

136  -  155

outside

156  -  158

TMhelix

159  -  178

inside

179  -  198

TMhelix

199  -  221

outside

222  -  230

TMhelix

231  -  253

inside

254  -  283

TMhelix

284  -  306

outside

307  -  566

 

 

Pi

1.360594

Theta

4.176993

Tajima's D

-2.172887

CLR

17.075237

CSRT

0.00434978251087446

Interpretation

Possibly Positive selection