Gene

KWMTBOMO11770

Annotation

hypothetical_protein_M513_10814?_partial_[Trichuris_suis]

Location

Bomo_Chr19(+):14431791-14432685      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.808

CDS

ATGCAAGGCATTGATAAAACGGACCCACCCCCCACAGACCCATTATTTCCTCAACCTACCTCAGTATGCAGAGTAGCCATAAAAATTCCTCCCTTCTGGCCTGATCGGCCTGCAATTTGGTTTGCTCAGGTAGAGGCACAATTCTCGATTTCAGGCATCTCCGCTGACCTGACTAAATTTAACTACGTGATTGCTCAGTTAGATACCCGAGTTATTGGGGAGGTAGAGGACATTATTCTCCAACCACCACCTGAGGACAAATATGGTCGCCTCAAATCCGAGTTGATCCGTAGGTTGTCCACGTCTGAGGAGCAACGTGTCAGGCAACTTGTCAGTGATGTTGAGTTGGGTGACCGCCGTCCTTCGCAGTTTTTACGTTATCTTAGATCATTGGCAGGAAAAACCCTCACTGATGAAAATTTGCTTCGCCAGCTATGGATGCGTCGCCTCCCACAACATCTCCAAGCAATTTTGGCCGCCCAATCCGAACTCTCGCTGGACAAAGTCGCTGAGCTAGCGGACAAAATTTTGGAAGTTTCGCCTGGTATGGTCGCACCTCATTCATCTGCTGTTTTCTCAGCAAGTACGTCTGCCGTCTCACCCCCTTCGTTAGAAGATATCACACGGCGTCTGGATGAGGTCACGCGTCAGCTTGCTGTGCTTACTGCAGAGCGCGGTAGAAATAGGACCCGGGATTTCTCAAACCAGCGACGACGCTCACAAACGCCTGGTAAGCTTCAAATGTGCTTTTACCATAGGAAATTTGATACTAAAGCTGTTAAGTGTATTCAACCATGTACCTGGACGCCGCCGCCATCTTCGGAAAACGACAAAAGCAGTCAATGA

Protein

MQGIDKTDPPPTDPLFPQPTSVCRVAIKIPPFWPDRPAIWFAQVEAQFSISGISADLTKFNYVIAQLDTRVIGEVEDIILQPPPEDKYGRLKSELIRRLSTSEEQRVRQLVSDVELGDRRPSQFLRYLRSLAGKTLTDENLLRQLWMRRLPQHLQAILAAQSELSLDKVAELADKILEVSPGMVAPHSSAVFSASTSAVSPPSLEDITRRLDEVTRQLAVLTAERGRNRTRDFSNQRRRSQTPGKLQMCFYHRKFDTKAVKCIQPCTWTPPPSSENDKSSQ

Uniprot

A0A085LTM6   A0A085N4U2   A0A085NBV3   A0A0J7K6V3   A0A0J7K6I6   A0A151IZ47   + More
A0A151ITG2   A0A0J7KD10   A0A0J7K7T5   A0A2J7RQK2   A0A1Y1MXV9   A0A2A4J8M7   A0A151JCH0   A0A1W4XBP5   A0A0L7QJB5   A0A0L7QK36   A0A2J7PLR6   A0A2J7QTC8   A0A0J7K0A7   A0A151K0A8   T1IE13   A0A0J7K6V1   A0A2J7QJD3   A0A026VRX8   A0A2G8L3A3   A0A2J7RGP3   E2BBH0   A0A2J7QH56   A0A154P674   A0A2H1WXE7   A0A2A4K2H4   A0A154NZG0   A0A2J7PML8   A0A2G8LNJ3   A0A1Y1MA44   A0A1E1W488   A0A2J7PCS9   A0A1S3CY78   A0A131YTY1   A0A151K2U9   A0A151JF00   A0A2A4JHF4   W4YWZ1   A0A1I8Q981   A0A0N5DP72   A0A0P8Y533   A0A0L7QMU1   A0A2L2YSA7   A0A0P8ZL89   W8B3F8   A0A293M3N6   A0A085LQ61   A0A0L7QJ97   A0A0L7QJ51   A0A131YM78   A0A139WA14   D7GYF3   A0A2G8JL30   D7EJX5   A0A3L8DMT5   A0A154PMS5   A0A1Y1NAW7   A0A182G9J3   A0A182H518   A0A151JBY5   D6WTN9   A0A0A9YNN7   A0A139W8G7   A0A293M349   A0A085N3N9   A0A182HB40   A0A2L2YTR5   A0A085NTM8   A0A2J7PD24   A0A151IIJ9   A0A026VX87   A0A0J7NAK0   A0A182H3L9   A0A154PT26   A0A0L8GMC8  

Pubmed

24929829    28004739    24508170    29023486    20798317    26830274    + More
17994087    26561354    24495485    18362917    19820115    30249741    26483478    25401762   

EMBL

KL363297    KFD48322.1    KL367555    KFD64488.1    KL367519    KFD66949.1    + More
LBMM01012479    KMQ86203.1    LBMM01013103    KMQ85816.1    KQ980726    KYN14011.1    KQ981018    KYN10257.1    LBMM01009142    KMQ88358.1    LBMM01012075    KMQ86422.1    NEVH01000707    PNF43124.1    GEZM01017686    JAV90494.1    NWSH01002598    PCG67884.1    KQ979048    KYN23218.1    LHQN01021927    LHQN01025379    KOC58628.1    KOC58659.1    KQ414987    KOC58988.1    NEVH01024424    PNF17276.1    NEVH01011195    PNF31836.1    LBMM01018089    KMQ83878.1    KQ981301    KYN43041.1    ACPB03037918    LBMM01012923    LBMM01012917    KMQ85926.1    KMQ85930.1    NEVH01013558    PNF28672.1    KK111495    EZA46390.1    MRZV01001127    MRZV01000236    PIK40395.1    PIK54731.1    NEVH01003759    PNF40011.1    GL447057    EFN86960.1    NEVH01014357    PNF27922.1    KQ434816    KZC06854.1    ODYU01011787    SOQ57731.1    NWSH01000267    PCG77880.1    KQ434784    KZC04993.1    NEVH01023981    PNF17578.1    MRZV01000025    PIK61772.1    GEZM01036621    JAV82564.1    GDQN01009305    JAT81749.1    NEVH01026435    PNF14140.1    GEDV01006140    JAP82417.1    LKEY01014428    KYN50445.1    KQ979024    KYN24351.1    NWSH01001575    PCG70822.1    AAGJ04150373    CH905996    KPU81830.1    KQ414874    KOC59935.1    IAAA01053498    IAAA01053499    LAA11042.1    CH902629    KPU75574.1    GAMC01010905    JAB95650.1    GFWV01009909    MAA34638.1    KL363340    KFD47107.1    KQ415240    KOC58703.1    LHQN01026442    KQ414593    KOC58672.1    KOC70162.1    GEDV01008183    JAP80374.1    KQ971745    KYB24749.1    GG695519    EFA13383.1    MRZV01001674    PIK36447.1    KQ971759    EFA12902.2    QOIP01000006    RLU21744.1    KQ434992    KZC13185.1    GEZM01010484    JAV94030.1    JXUM01049417    KQ561603    KXJ78027.1    JXUM01111110    KQ565471    KXJ70931.1    KQ979103    KYN22624.1    KQ971355    EFA07205.2    GBHO01008962    JAG34642.1    KQ973343    KXZ75568.1    GFWV01009910    MAA34639.1    KL367562    KFD64085.1    JXUM01031600    KQ560927    KXJ80313.1    IAAA01048245    LAA10725.1    KL367475    KFD72824.1    NEVH01026394    PNF14234.1    KQ977516    KYN02153.1    KK107653    EZA48265.1    LBMM01007548    KMQ89630.1    JXUM01107723    KQ565168    KXJ71261.1    KQ435204    KZC15052.1    KQ421206    KOF78131.1   

Proteomes

UP000036403    UP000078492    UP000235965    UP000218220    UP000192223    UP000053825    + More
UP000078541    UP000015103    UP000053097    UP000230750    UP000008237    UP000076502    UP000079169    UP000007110    UP000095300    UP000046395    UP000007801    UP000007266    UP000279307    UP000069940    UP000249989    UP000078542    UP000053454   

Pfam

PF10551   MULE        + More
PF00078   RVT_1
PF17921   Integrase_H2C2
PF17917   RT_RNaseH
PF00665   rve
PF17919   RT_RNaseH_2

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR018289   MULE_transposase_dom       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR041373   RT_RNaseH       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

A0A085LTM6   A0A085N4U2   A0A085NBV3   A0A0J7K6V3   A0A0J7K6I6   A0A151IZ47   + More
A0A151ITG2   A0A0J7KD10   A0A0J7K7T5   A0A2J7RQK2   A0A1Y1MXV9   A0A2A4J8M7   A0A151JCH0   A0A1W4XBP5   A0A0L7QJB5   A0A0L7QK36   A0A2J7PLR6   A0A2J7QTC8   A0A0J7K0A7   A0A151K0A8   T1IE13   A0A0J7K6V1   A0A2J7QJD3   A0A026VRX8   A0A2G8L3A3   A0A2J7RGP3   E2BBH0   A0A2J7QH56   A0A154P674   A0A2H1WXE7   A0A2A4K2H4   A0A154NZG0   A0A2J7PML8   A0A2G8LNJ3   A0A1Y1MA44   A0A1E1W488   A0A2J7PCS9   A0A1S3CY78   A0A131YTY1   A0A151K2U9   A0A151JF00   A0A2A4JHF4   W4YWZ1   A0A1I8Q981   A0A0N5DP72   A0A0P8Y533   A0A0L7QMU1   A0A2L2YSA7   A0A0P8ZL89   W8B3F8   A0A293M3N6   A0A085LQ61   A0A0L7QJ97   A0A0L7QJ51   A0A131YM78   A0A139WA14   D7GYF3   A0A2G8JL30   D7EJX5   A0A3L8DMT5   A0A154PMS5   A0A1Y1NAW7   A0A182G9J3   A0A182H518   A0A151JBY5   D6WTN9   A0A0A9YNN7   A0A139W8G7   A0A293M349   A0A085N3N9   A0A182HB40   A0A2L2YTR5   A0A085NTM8   A0A2J7PD24   A0A151IIJ9   A0A026VX87   A0A0J7NAK0   A0A182H3L9   A0A154PT26   A0A0L8GMC8  

KEGG

101745414    no KO assigned | (RefSeq) uncharacterized LOC101745414

GO

GO:0005634   GO:0004190   GO:0003676   GO:0015074  

Length:

281

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00386

Exp number, first 60 AAs:

0.00326

Total prob of N-in:

0.02842

outside

1  -  281

 

 

Pi

13.214659

Theta

24.646897

Tajima's D

-1.414493

CLR

7.136108

CSRT

0.0697465126743663

Interpretation

Uncertain