Gene

KWMTBOMO11766  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004210

Annotation

PREDICTED:_WD_repeat-containing_protein_89_[Amyelois_transitella]

Location

Bomo_Chr19(+):14389771-14395635      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.642

CDS

ATGGCTGATATTGTTGATAACGAAGAAAATGACCGAGATACTGTAGAGCCCGAAGAATTGGAGCAAATGTTCAGTAAGAAGTATAAAATTGTTACGGAACATGCTGTTTCTCTTCTACACTCGTATATACACCGATTGGACGGAACAAAATCTCTAAACTTGGCCATTAGTCTCTCAGACAACTCAATTGAAATATACAAACTTAGTGATTCGTCACTGCATCAAGTTTGTCGCTTGCATGGACACAAGGAGGCAACACTGACACAAGTTGTGTTTAGTCCTAAGGAAGACAATCTACTGTACTCAACTGGACTTGATGGACTTGTAAAGCTGTGGGATATAAGAGCAGGAGGCTCCTGTGTTTTGGAGTACAAAGATGAAGAGGAAGAAATACTGAGGCCATATGAATGCATGGATGTATCCTGTAATGGCATAGTGCTGTGTACTGGCAGTCAACTCGTGGACGATGATGCTTATCTGGTCTTTTTCGACCAGAGGAAGCCTAAACCATTGGGAGGATATTGGAACTCTCATACTGATGATGTTACTCAGATAAAGTTCCACCCGACTCGAATGGAGATCCTTGTGTCGGGCTCGCTGGACGGGCTGATCAACGTGTACAACATAGTAGAGGAAACGGAAGAGGACGCTCTACTTTACAGCCTCAATGTTGAGAACTCTATCGACACTCTCTCATGGTTGGATGGGGAGCACGTGGGCTGTGTCACCCAGTCCAACGACTACCAGCTGTGGAACGCCATCAGCGGAGACATCGTCAAGGAATACGAGAGGGACAAAGTCTCGAGGAGCATAAAGAGGAGCAAGGAGGACGACTGCTACCTGGTGGACTCGTTCACGTCGGCGGAAGGGCGGCGCGTGCTGCTGGCGGGCTCGCACGCCGGCTCCGGCGACGTGCTCCGTTCCGTGGCAGTAGTGGACAAGAAGCTCCAGCCCTGCTCCAACTTCAAGGACAACAAGCAGGTGGTCCGCAGCTGCTGGTACAGCGCACAGCACGACATCCTGGTGACGTCAGGCGAGTCTGGGATACTATCGGTGTGGGGTGACTGCCAGTCGGAGCCCGAAGCGCCAGAAGTGAGGAAGCTCACGGACTCCCTCAGCAAGCTCCAAGACGGCAGACATAAGCCCTACTGA

Protein

MADIVDNEENDRDTVEPEELEQMFSKKYKIVTEHAVSLLHSYIHRLDGTKSLNLAISLSDNSIEIYKLSDSSLHQVCRLHGHKEATLTQVVFSPKEDNLLYSTGLDGLVKLWDIRAGGSCVLEYKDEEEEILRPYECMDVSCNGIVLCTGSQLVDDDAYLVFFDQRKPKPLGGYWNSHTDDVTQIKFHPTRMEILVSGSLDGLINVYNIVEETEEDALLYSLNVENSIDTLSWLDGEHVGCVTQSNDYQLWNAISGDIVKEYERDKVSRSIKRSKEDDCYLVDSFTSAEGRRVLLAGSHAGSGDVLRSVAVVDKKLQPCSNFKDNKQVVRSCWYSAQHDILVTSGESGILSVWGDCQSEPEAPEVRKLTDSLSKLQDGRHKPY

Uniprot

H9J3X1   A0A2H1W3M3   A0A2W1BSC5   A0A212EK02   A0A194QYL8   A0A194PM43   + More
A0A2P8XWK0   D6WMD0   E0VQQ9   A0A2J7PHW4   A0A2J7PHX0   A0A067R1D1   A0A1B6HU78   A0A1I8PFT6   E9J572   A0A1Q3EX70   B0XBR7   A0A0L0CAI6   A0A1I8MMQ1   A0A1J1HSM4   A0A1B6KZQ3   J9JSY3   A0A087ZX35   A0A2S2NT57   A0A2H8TWZ9   A0A182GM58   A0A026WPX4   Q16U35   A0A232EP13   A0A2A3ECR2   W8BXJ5   A0A1Y1LRD2   Q16IG0   K7IZB9   A0A182GZN0   B4GIF1   A0A1B6CLX5   A0A1B0AGX5   Q8I1E4   U5ETJ9   A0A0N0BG13   A0A0K8UWT6   E2ADT9   A0A0A1WUE4   A0A0K8W6I8   A0A0M4E3N5   E9GSC2   A0A310SLR8   Q7JZ37   A0A3B0JGP6   A0A1B0FDV2   B4MP82   B4QHU6   A0A1I8JSQ7   B4IMQ9   Q8I165   B4NX25   A0A0J7KLM2   U4UU55   B3N6S8   Q8I1G7   A0A158NR24   A0A182X558   W5JSL2   A0A084VZ88   A0A182PM41   A0A195C8W1   A0A2C9GR03   A0A034WCZ8   A0A1W4UMQ4   A0A182LJH6   A0A2M4ATN5   A0A195EVA6   A0A1A9W843   A0A195E6H8   A0A182WKC3   F4WP98   A0A1S4FP99   A0A195B0T8   A0A182IVM8   A0A151WMH0   A7UTQ8   A0A0P5STA8   A0A182RN23   B4LN43   A0A0P6J948   Q7JRI4   A0A0P5IWB6   A0A0P5JAZ6   A0A1B0C1U6   A0A1A9YKI5   A0A182JRH5   A0A182TW19   A0A182R049  

Pubmed

19121390    28756777    22118469    26354079    29403074    18362917    + More
19820115    20566863    24845553    21282665    26108605    25315136    26483478    24508170    30249741    17510324    28648823    24495485    28004739    20075255    17994087    15632085    23185243    20798317    25830018    21292972    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    17550304    23537049    21347285    20920257    23761445    24438588    25348373    21719571    12364791    14747013    17210077   

EMBL

BABH01028973    ODYU01006119    SOQ47685.1    KZ149915    PZC77982.1    AGBW02014361    + More
OWR41806.1    KQ460949    KPJ10389.1    KQ459598    KPI94506.1    PYGN01001238    PSN36389.1    KQ971343    EFA03321.1    DS235430    EEB15715.1    NEVH01025130    PNF15925.1    PNF15924.1    KK852779    KDR16692.1    GECU01029462    JAS78244.1    GL768124    EFZ12012.1    GFDL01015136    JAV19909.1    DS232648    EDS44416.1    JRES01000678    KNC29267.1    CVRI01000018    CRK90388.1    GEBQ01023049    JAT16928.1    ABLF02007614    ABLF02007615    GGMR01007603    MBY20222.1    GFXV01006247    MBW18052.1    JXUM01073885    JXUM01073886    JXUM01073887    KQ562799    KXJ75101.1    KK107139    QOIP01000003    EZA57721.1    RLU24340.1    CH477632    EAT38050.1    NNAY01003030    OXU20090.1    KZ288292    PBC29082.1    GAMC01012621    JAB93934.1    GEZM01048992    GEZM01048988    JAV76209.1    CH478080    EAT34049.1    JXUM01099920    JXUM01099921    JXUM01099922    KQ564528    KXJ72132.1    CH479183    EDW36271.1    GEDC01022905    GEDC01015211    GEDC01011432    GEDC01001962    JAS14393.1    JAS22087.1    JAS25866.1    JAS35336.1    AY190942    CM000071    AAO01026.1    EAL25806.1    GANO01002749    JAB57122.1    KQ435794    KOX74134.1    GDHF01021519    JAI30795.1    GL438820    EFN68451.1    GBXI01012152    JAD02140.1    GDHF01005516    JAI46798.1    CP012524    ALC40491.1    GL732561    EFX77692.1    KQ764513    OAD54509.1    AE013599    AY071560    AAF58866.1    AAL49182.1    OUUW01000001    SPP74530.1    CCAG010000539    CCAG010000540    CH963849    EDW73921.1    CM000362    CM002911    EDX06430.1    KMY92631.1    CH481150    EDW51294.1    AY190959    AAO01105.1    CM000157    EDW89586.1    LBMM01005822    KMQ91182.1    KB632370    ERL93726.1    CH954177    EDV58177.1    AY190939    AAO01002.1    ADTU01023748    ADMH02000483    ETN66293.1    ATLV01018617    KE525239    KFB43282.1    KQ978081    KYM97135.1    APCN01004294    GAKP01006937    JAC52015.1    GGFK01010830    MBW44151.1    KQ981965    KYN31827.1    KQ979608    KYN20482.1    GL888243    EGI64079.1    KQ976691    KYM77905.1    KQ982944    KYQ49020.1    AAAB01008960    EDO63680.1    GDIP01135554    LRGB01001348    JAL68160.1    KZS12809.1    CH940648    EDW60047.1    GDIQ01010979    JAN83758.1    BT001570    AAM71048.1    AAN71325.1    GDIQ01206921    JAK44804.1    GDIQ01227655    JAK24070.1    JXJN01024174    AXCN02002330   

Proteomes

UP000005204    UP000007151    UP000053240    UP000053268    UP000245037    UP000007266    + More
UP000009046    UP000235965    UP000027135    UP000095300    UP000002320    UP000037069    UP000095301    UP000183832    UP000007819    UP000005203    UP000069940    UP000249989    UP000053097    UP000279307    UP000008820    UP000215335    UP000242457    UP000002358    UP000008744    UP000092445    UP000001819    UP000053105    UP000000311    UP000092553    UP000000305    UP000000803    UP000268350    UP000092444    UP000007798    UP000000304    UP000069272    UP000001292    UP000002282    UP000036403    UP000030742    UP000008711    UP000005205    UP000076407    UP000000673    UP000030765    UP000075885    UP000078542    UP000075840    UP000192221    UP000078541    UP000091820    UP000078492    UP000075920    UP000007755    UP000078540    UP000075880    UP000075809    UP000007062    UP000076858    UP000075900    UP000008792    UP000092460    UP000092443    UP000075881    UP000075902    UP000075886   

PRIDE

H9J3X1    Q7JZ37    Q7JRI4   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40
PF18437   Nup54_C
PF13874   Nup54
PF13499   EF-hand_7

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR039328   WDR89       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR020472   G-protein_beta_WD-40_rep       
IPR024977   Apc4_WD40_dom       
IPR024864   Nup54/Nup57/Nup44       
IPR025712   Nup54_alpha-helical_dom       
IPR040985   Nup54_C       
IPR018247   EF_Hand_1_Ca_BS       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF47473   SSF47473       

Gene 3D

2.130.10.10    

CDD

cd00051  EFh

ProteinModelPortal

H9J3X1   A0A2H1W3M3   A0A2W1BSC5   A0A212EK02   A0A194QYL8   A0A194PM43   + More
A0A2P8XWK0   D6WMD0   E0VQQ9   A0A2J7PHW4   A0A2J7PHX0   A0A067R1D1   A0A1B6HU78   A0A1I8PFT6   E9J572   A0A1Q3EX70   B0XBR7   A0A0L0CAI6   A0A1I8MMQ1   A0A1J1HSM4   A0A1B6KZQ3   J9JSY3   A0A087ZX35   A0A2S2NT57   A0A2H8TWZ9   A0A182GM58   A0A026WPX4   Q16U35   A0A232EP13   A0A2A3ECR2   W8BXJ5   A0A1Y1LRD2   Q16IG0   K7IZB9   A0A182GZN0   B4GIF1   A0A1B6CLX5   A0A1B0AGX5   Q8I1E4   U5ETJ9   A0A0N0BG13   A0A0K8UWT6   E2ADT9   A0A0A1WUE4   A0A0K8W6I8   A0A0M4E3N5   E9GSC2   A0A310SLR8   Q7JZ37   A0A3B0JGP6   A0A1B0FDV2   B4MP82   B4QHU6   A0A1I8JSQ7   B4IMQ9   Q8I165   B4NX25   A0A0J7KLM2   U4UU55   B3N6S8   Q8I1G7   A0A158NR24   A0A182X558   W5JSL2   A0A084VZ88   A0A182PM41   A0A195C8W1   A0A2C9GR03   A0A034WCZ8   A0A1W4UMQ4   A0A182LJH6   A0A2M4ATN5   A0A195EVA6   A0A1A9W843   A0A195E6H8   A0A182WKC3   F4WP98   A0A1S4FP99   A0A195B0T8   A0A182IVM8   A0A151WMH0   A7UTQ8   A0A0P5STA8   A0A182RN23   B4LN43   A0A0P6J948   Q7JRI4   A0A0P5IWB6   A0A0P5JAZ6   A0A1B0C1U6   A0A1A9YKI5   A0A182JRH5   A0A182TW19   A0A182R049  

PDB

3MXX     E-value=0.00059589,     Score=102

KEGG

101735497    no KO assigned | (RefSeq) WD repeat-containing protein 89

GO

GO:0005643   GO:0005509   GO:0005515   GO:0016787   GO:0006468   GO:0005615   GO:0005524   GO:0006139   GO:0019205   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR22889   PTHR13000  

Length:

383

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00166

Exp number, first 60 AAs:

0.00052

Total prob of N-in:

0.01698

outside

1  -  383

 

 

Pi

17.467693

Theta

21.024936

Tajima's D

-0.634079

CLR

0

CSRT

0.215339233038348

Interpretation

Uncertain