Gene

KWMTBOMO11765

Pre Gene Modal

BGIBMGA004209

Annotation

PREDICTED:_translin-associated_factor_X-interacting_protein_1-like_[Bombyx_mori]

Location

Bomo_Chr19(+):14384541-14388665      View in EpiBrowser

Full name

Translin-associated factor X-interacting protein 1      

Location in the cell

Cytoplasmic   Reliability : 1.707 Mitochondrial   Reliability : 2.303

CDS

ATGGACCCCTCGATACCTACATACCTGCGCTACGAAGGCAAGGTGCGGAACCTGCGACTCTCGCGACGGGAGATCAGCGTCATCATCAACGACATCTGGCTCGGGAAACAACAACACATGTCCATGTCCATGCAGGATTACGTCACCAAGTATTTTGAAGATAGGTACCAGCAGGCTTCGGTCCGAGCCGAATGGGCGTACAACCTGTGCGCTGGCGCCGAGCAGCTGCTAGACGACCCGCAGGTGCGACTGTTCTGGGGCACCGCGCATGCGCAGCTCAGCGAGCACGTGTACTGGGGCCTGCGGACGCACTGGCGCGCGCTGCGGGACCAGCTGTACCGACACGCTGACGGCCGGGAGACCATTTCCATTGAAGAATTCGAGAAAGTTGCGAAAGCTACGTTCCCGTTGAAGAGTGAGGTCGATATCAAAAACTTAGTGGACGTGGTGAGGAAGCAGCTCAAACTGAAGATCAACAACCAGCTTATATGCCTGGACAAACTTTTCTATGAGAACGAAGAAGGCTTCGAGAGAATAGAACTGGCCAAGGAGTTGTACAGACAGCGGAGGCTTGCTCAGGACCGGTACATCCGCGAGCTAGTCGCCACCTTGGGAGGGAAACAAGCCGCCAACAAGCCTGTCACTGTGGACGCACTGAAAAGGGCCTTCGCATTGCTCGACCCAGCTATCGATCATATTCGCATGGAACGTTACATACGCTGGGCGTTCTCGGATAACACTTCTGATTTGAACAACATCTGTGCAATACCACTGAGAACACTCACAGGAAGACTGGCTGCGGGAGACATAGAGAGAGTGGGGCCGAGGTATAAGAGCATTAGGAGGACTTACAAGTAA

Protein

MDPSIPTYLRYEGKVRNLRLSRREISVIINDIWLGKQQHMSMSMQDYVTKYFEDRYQQASVRAEWAYNLCAGAEQLLDDPQVRLFWGTAHAQLSEHVYWGLRTHWRALRDQLYRHADGRETISIEEFEKVAKATFPLKSEVDIKNLVDVVRKQLKLKINNQLICLDKLFYENEEGFERIELAKELYRQRRLAQDRYIRELVATLGGKQAANKPVTVDALKRAFALLDPAIDHIRMERYIRWAFSDNTSDLNNICAIPLRTLTGRLAAGDIERVGPRYKSIRRTYK

Description

Possible role in spermatogenesis.

Cofactor

Zn(2+)

Subunit

Interacts with TSNAX.

Keywords

Alternative splicing   Coiled coil   Complete proteome   Cytoplasm   Developmental protein   Differentiation   Reference proteome   Spermatogenesis  

Feature

chain  Translin-associated factor X-interacting protein 1
splice variant  In isoform 2.

Uniprot

H9J3X0   A0A2A4IX75   A0A2H1W404   A0A212EJZ0   A0A194QZI7   A0A2W1C1J3   + More
A0A0L7LV52   A0A194PNE5   A0A210Q650   W5MIE2   A0A093GUY3   A0A2D0QU94   A0A151NJL6   A0A151NJQ0   A0A2D0QS61   A0A2D0QSM5   A0A3Q0HKU0   A0A1U8DTW8   A0A091VJW4   A0A1W5BDP6   A0A093J4I9   A0A099Z1Q7   A0A2B4SSK8   A0A093IUQ0   G3VPV0   A0A2C9LEK7   A0A1S3HVH3   R7TYE8   F7E536   A0A1I8I4E0   A0A1I8H1P3   A0A1I8HM83   A0A3S0ZEM4   A0A267EVN7   A0A267H038   G1MUW5   A0A1S3MMZ5   A0A2G8KC24   A0A091CRK4   I3M180   H0VYZ1   A0A2C9JQP7   G5C673   A0A0P6JB22   A0A060VY88   A0A091VHK3   A0A087QN88   A0A087V5V3   F7CPE8   A0A093N9S9   B3RJ37   A0A369SJY0   A0A2T7NHV5   A0A2R9CEK2   A0A2K6KZ57   A0A2K6KZ58   A0A2R9C4K9   A0A2R9C4K4   C3ZBK7   A0A2R9C439   A0A2K6P1T9   H0XDI5   A0A3B4CL14   A0A3M6V0Y0   A0A0L8IBM9   H2NR90   A0A2K6P1U0   M7BF82   A0A2J8VV16   Q2TAA8-2   A0A024R6Y0   A0A2I3TDF2   A0A2K5HGM2   A0A2J8VUY3   A0A2J8VV01   A0A2K5HGH2   A0A2J8Q4F6   A0A2I3SU45   A0A2K5XZ63   G2HGJ0   H2QBC6   A0A2I3SJ30   A0A2K5HGA3   A0A2K5XZ79   A0A2K5XZ89   L5KTH7   A0A3L7I010   G3HKX6   G3SYD2   A0A091R865   A0A2Y9QGN0   Q2TAA8   B4DXD0   E7ENJ7   V4A7K7   A0A226P8Z8   A0A226MTB5   B4E1H3   A0A2I2ZLQ8  

Pubmed

19121390    22118469    26354079    28756777    26227816    28812685    + More
22293439    12203911    21709235    15562597    23254933    17495919    26392545    20838655    29023486    21993624    21993625    24755649    18464734    18719581    30042472    22722832    18563158    25362486    30382153    23624526    15489334    11181995    16136131    21484476    23258410    29704459    21804562    15616553    24621616    22398555   

EMBL

BABH01028971    BABH01028972    NWSH01005263    PCG64331.1    ODYU01006119    SOQ47686.1    + More
AGBW02014361    OWR41807.1    KQ460949    KPJ10390.1    KZ149915    PZC77983.1    JTDY01000030    KOB79305.1    KQ459598    KPI94508.1    NEDP02004845    OWF44195.1    AHAT01020929    KL205759    KFV74118.1    AKHW03002899    KYO36981.1    KYO36980.1    KL411055    KFR02965.1    KK568557    KFW05919.1    KL887264    KGL74730.1    LSMT01000036    PFX31355.1    KK599721    KFW05388.1    AEFK01033599    AEFK01033600    AMQN01011572    KB308952    ELT95990.1    RQTK01000709    RUS75818.1    NIVC01001635    PAA65610.1    NIVC01000082    PAA91648.1    MRZV01000707    PIK45532.1    KN124866    KFO20000.1    AGTP01009850    AAKN02026501    JH173492    EHB17034.1    GEBF01003935    JAN99697.1    FR904294    CDQ57979.1    KK431402    KFQ89093.1    KL225750    KFM02692.1    KL480996    KFO07995.1    KL224535    KFW60951.1    DS985241    EDV29796.1    NOWV01000004    RDD47069.1    PZQS01000012    PVD20736.1    AJFE02038540    AJFE02038541    AJFE02038542    AJFE02038543    AJFE02038544    AJFE02038545    AJFE02038546    AJFE02038547    AJFE02038548    GG666603    EEN50244.1    AAQR03153027    RCHS01000309    RMX59593.1    KQ416051    KOF98913.1    ABGA01340701    KB575444    EMP26877.1    NDHI03003408    PNJ61348.1    AF132730    CH471092    BC111018    AAF66441.1    AAI11019.1    EAW83177.1    AACZ04051789    PNJ61341.1    PNJ61345.1    NBAG03000083    PNI91159.1    AK305854    BAK62848.1    PNI91161.1    PNI91163.1    KB030572    ELK14515.1    RAZU01000121    RLQ71548.1    JH000471    EGW10113.1    KK811296    KFQ35686.1    AC040162    AK301920    BAG63342.1    KB202284    ESO91005.1    AWGT02000127    OXB76062.1    MCFN01000464    OXB58492.1    AK303841    BAG64785.1    CABD030101683    CABD030101684    CABD030101685    CABD030101686   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000037510    UP000053268    + More
UP000242188    UP000018468    UP000053584    UP000221080    UP000050525    UP000189705    UP000053283    UP000053641    UP000225706    UP000007648    UP000076420    UP000085678    UP000014760    UP000002280    UP000095280    UP000271974    UP000215902    UP000001645    UP000087266    UP000230750    UP000028990    UP000005215    UP000005447    UP000006813    UP000193380    UP000053286    UP000002279    UP000054081    UP000009022    UP000253843    UP000245119    UP000240080    UP000233180    UP000001554    UP000233200    UP000005225    UP000261440    UP000275408    UP000053454    UP000001595    UP000031443    UP000005640    UP000002277    UP000233080    UP000233140    UP000010552    UP000273346    UP000001075    UP000007646    UP000248480    UP000030746    UP000198419    UP000198323    UP000001519   

PRIDE

H9J3X0    Q2TAA8    G3HKX6    B4DXD0    E7ENJ7    B4E1H3    + More

Pfam

PF02574   S-methyl_trans        + More
PF15739   TSNAXIP1_N

Interpro

IPR003726   HCY_dom        + More
IPR036589   HCY_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR032755   TSNAXIP1_N       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR002048   EF_hand_dom       
IPR011992   EF-hand-dom_pair       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF82282   SSF82282        + More
SSF50978   SSF50978       
SSF47473   SSF47473       

Gene 3D

3.20.20.330     2.130.10.10    

ProteinModelPortal

H9J3X0   A0A2A4IX75   A0A2H1W404   A0A212EJZ0   A0A194QZI7   A0A2W1C1J3   + More
A0A0L7LV52   A0A194PNE5   A0A210Q650   W5MIE2   A0A093GUY3   A0A2D0QU94   A0A151NJL6   A0A151NJQ0   A0A2D0QS61   A0A2D0QSM5   A0A3Q0HKU0   A0A1U8DTW8   A0A091VJW4   A0A1W5BDP6   A0A093J4I9   A0A099Z1Q7   A0A2B4SSK8   A0A093IUQ0   G3VPV0   A0A2C9LEK7   A0A1S3HVH3   R7TYE8   F7E536   A0A1I8I4E0   A0A1I8H1P3   A0A1I8HM83   A0A3S0ZEM4   A0A267EVN7   A0A267H038   G1MUW5   A0A1S3MMZ5   A0A2G8KC24   A0A091CRK4   I3M180   H0VYZ1   A0A2C9JQP7   G5C673   A0A0P6JB22   A0A060VY88   A0A091VHK3   A0A087QN88   A0A087V5V3   F7CPE8   A0A093N9S9   B3RJ37   A0A369SJY0   A0A2T7NHV5   A0A2R9CEK2   A0A2K6KZ57   A0A2K6KZ58   A0A2R9C4K9   A0A2R9C4K4   C3ZBK7   A0A2R9C439   A0A2K6P1T9   H0XDI5   A0A3B4CL14   A0A3M6V0Y0   A0A0L8IBM9   H2NR90   A0A2K6P1U0   M7BF82   A0A2J8VV16   Q2TAA8-2   A0A024R6Y0   A0A2I3TDF2   A0A2K5HGM2   A0A2J8VUY3   A0A2J8VV01   A0A2K5HGH2   A0A2J8Q4F6   A0A2I3SU45   A0A2K5XZ63   G2HGJ0   H2QBC6   A0A2I3SJ30   A0A2K5HGA3   A0A2K5XZ79   A0A2K5XZ89   L5KTH7   A0A3L7I010   G3HKX6   G3SYD2   A0A091R865   A0A2Y9QGN0   Q2TAA8   B4DXD0   E7ENJ7   V4A7K7   A0A226P8Z8   A0A226MTB5   B4E1H3   A0A2I2ZLQ8  

KEGG

105841347    no KO assigned | (RefSeq) translin-associated factor X-interacting protein 1-like

GO

GO:0046872   GO:0008168   GO:0005509   GO:0005737   GO:0007275   GO:0030154   GO:0048471   GO:0007283  

Subcellular location

  

Length:

285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00224

Exp number, first 60 AAs:

0.00085

Total prob of N-in:

0.06065

outside

1  -  285

 

 

Pi

19.530568

Theta

21.128124

Tajima's D

-0.743117

CLR

2.093319

CSRT

0.190740462976851

Interpretation

Uncertain