SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11750
Pre Gene Modal
BGIBMGA004201
Annotation
PREDICTED:_uncharacterized_protein_LOC106135651_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.069
 

Sequence

CDS
ATGTATTTCACCTCAGCAAGTTCTCGTTTGTTACTTTATGATTGTTTAACGTGGGAACTGAAAAAGTCCTACGGATGTTACGAGGGTCTGCTACGTGATATTTCATGGAGCGACGACAGCAAATACATATTGCAGGTGAATTCAAAAGGCTTAGTTGAAATATTATCTGCAGCGGATCACGACGTCCGGAGTTTACAGCATTTATCATTAAAAGACAGTTGGTGTGCGAGTTTCCACCGAGATGGCCATCGTAACATAGCCGTAGGCACCAAGAACGGTAATGTAATGATATGGGACACGAAGAACCGAAGTGTCATAAAAACGTTTCCAACACCTTCACACCAGTCTGCTGTAAACTTCGTTAGCTACAATGCCAAGAATACTAGTTTAGCAGCGACCATGCAAAATGGCGACACGGTCATTTACGGTCTTGTATCAAACATTCCGGTTCTAACGGTCAAACTGCCTTGTTCGAAAAGTATTTCGGCGATGAAGTTTCATCAAGATGCTCGCTCGCTGTTGGGGCTAGCAACCGATGAAGGCCACATCGTGCTCCGAGACGTAACCACGAATAAAGATAAGGTGTTCTTTGAAAATGTACACGGGGCTCCGGTCAGTGATATTGCGTACTCGCTGATCAATCGAGACGTTATGTTTTCCTGTGGCTACGATAAAATCATGCACGTTTATGATATTCGATTACAGAACATAGTTTCGACTATTAAGGCTGCTTACACATTGACTTCCCTGGCCGTGAACACAGAAAACCAAGTCGGTTTCGGTACGAAAAATGGCGTAGTCCTCATATACGATTTGAGAGATTTAACTATTCCATTCAAAATACTTAGAGGTCACGAAGATGAAGTTAGAAAGGTTACTTTCCAACCTTTGCGAAAGATGGCCTTCTCAGCTGAAATCAGCCTGCGAGAAGATACTGAATGTCTTTCGCCAACTAAAGTACACTCCCCGGTCCGTACAAGAACTTCGGATATGTTTTTCATAAGCGACACACCCCCAAAAAATAATCTCGAAATATCTAATCAAGGTGATGCCAAAGCAGATTCATTTCTTGTCATGATGGGACTGGATAAATCGAACAATGATTTTGATGATGAAGGCAGTAAGTCTTTGGACCATGAAAGGAAAAGTGATAGGCACGAAGCAAGGTATCGCCAGTTGGACGCTGAAAAGAACATTAGTAAGATATCTACTCCTTTAACTAGCAGAACGATGGATAACTTAGTGTTTCCATCCCCTTTACCTTCCAACGGACTTGCCGAAGAAGCTCGGATATCAAATACAAATCTACCAATCAAACATTCTAGTTCTACTCCTTGCGTTGACGTAATGGAGAATAAATCCTTAGATGAATTAAAAGATTTTATTAAACTTACACTGACCGACGTCGCAGATGACAATAGAAATTATTTCCTGCACATCATGATGGCTCTGACAAAACAAAAATTATATTTAGAGAAACAACTGTCCAATATGAATGAGCAGATTCAGAATCTAACCTACAACCAAGACGTTTTAGTTGAGACAAACAGAAAACTGGCTTTAGAAATTGATCAATTAAAAAAGAGAACTAGCTTTAATAAAACTTAG
Protein
MYFTSASSRLLLYDCLTWELKKSYGCYEGLLRDISWSDDSKYILQVNSKGLVEILSAADHDVRSLQHLSLKDSWCASFHRDGHRNIAVGTKNGNVMIWDTKNRSVIKTFPTPSHQSAVNFVSYNAKNTSLAATMQNGDTVIYGLVSNIPVLTVKLPCSKSISAMKFHQDARSLLGLATDEGHIVLRDVTTNKDKVFFENVHGAPVSDIAYSLINRDVMFSCGYDKIMHVYDIRLQNIVSTIKAAYTLTSLAVNTENQVGFGTKNGVVLIYDLRDLTIPFKILRGHEDEVRKVTFQPLRKMAFSAEISLREDTECLSPTKVHSPVRTRTSDMFFISDTPPKNNLEISNQGDAKADSFLVMMGLDKSNNDFDDEGSKSLDHERKSDRHEARYRQLDAEKNISKISTPLTSRTMDNLVFPSPLPSNGLAEEARISNTNLPIKHSSSTPCVDVMENKSLDELKDFIKLTLTDVADDNRNYFLHIMMALTKQKLYLEKQLSNMNEQIQNLTYNQDVLVETNRKLALEIDQLKKRTSFNKT

Summary

Pfam
PF00561   Abhydrolase_1        + More
PF08662   eIF2A
PF00400   WD40
Interpro
IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR036322   WD40_repeat_dom_sf       
IPR011044   Quino_amine_DH_bsu       
IPR029058   AB_hydrolase       
IPR000073   AB_hydrolase_1       
IPR019775   WD40_repeat_CS       
IPR013979   TIF_beta_prop-like       
SUPFAM
SSF50978   SSF50978        + More
SSF50969   SSF50969       
SSF53474   SSF53474       
Gene 3D
PDB
4PSX     E-value=1.56233e-06,     Score=126

Ontologies

Topology

Length:
535
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01103
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00244
outside
1  -  535
 
 

Population Genetic Test Statistics

Pi
21.075159
Theta
16.25856
Tajima's D
-0.821292
CLR
1.71151
CSRT
0.178191090445478
Interpretation
Uncertain
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