Gene

KWMTBOMO11747  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004158

Annotation

achintya_[Bombyx_mori]

Location

Bomo_Chr19(-):13172687-13185083      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 3.767

CDS

ATGTTACCTCCCACGGCCGGTCTCTCACAAGAACAGCGCGACCGGACCGAAATGGCATTCCAACACCGACGTGACGTGAGGGAATTGACCCGAGAAATCATCAGGGACGCTCGCGTCGCTAACAGACAACAGTCCTCATCTCCTGGAGTAAGAAACCGTTTCCCTTCGACTTCATCGACGGACGAAAATGAGAGCGGCACAGACGGCGAGGCGGACCGGTCGCGCCGGCAGACCATCCTCCACGGAGTCTCCGGCATGCAGCCCCAGGGTCAGATAGTGACAATACGGAAACGTCGAGGGAACCTCGCCAAGCATTCGGTGAAGATATTGAAGCGATGGCTGTACGACCACAGGTACAACGCGTACCCGAGCGACGCCGAGAAAATAGCGCTCAGCCAGGAGGCCAATTTGAGTGTCTTGCAGGTATGTAACTGGTTTATAAACGCGAGACGTCGCATCTTGCCGGAGATGATACGTCGCGAGGGTCATGATCCGTTACACTACACGATCTCACGCCGCGGACGGAAACAACCCTCGGGCGCTTCCTCCAGCGCGTCCAACTCTGGAGTCGTTGTCGCTTCTTGGGACGGAGCTGATGTTGAGAATGATCCAGACCGCAGCGCAGAGCAAGAGTACACTGATGGTCTACTGGTGTATCGTAGTGAAGGAGATGACATTGCAGACGGTGAAGAAGGCTACTCCTCCAGTGCGGTCAGCGAGGAAGAAGTGAAATACGATCCTTCTGTGTGGCAGTCGGTCATCAGATACGGACCAGAAGATAAGGAGATACATCCCGCTGTCAGAGGTACGGCGTCGGCGGTGGTGACGGTGCGCACGGCGGAGGGGGCCGTGGAGGGCGACGGAGAGGGGGGTGAAGGGGAGGGAGAAGGCGGCACGCCGGGGGGCTGGCACCCACAACTCGCACATCTTCCGCAACTGCCGCACCCGCTCAGGAAACGGCTGCAGGTGGTCCCGGCGGCGGGCGAAGGCGAGCGCGACAAGTTCAAGTGCCTGTACCTGCTGGTGGAGACCGCCGTGGCCGTGCGCCAGCGCGAGAAGGAAGCCGACGAGCTGCCCGTCTAG

Protein

MLPPTAGLSQEQRDRTEMAFQHRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRREGHDPLHYTISRRGRKQPSGASSSASNSGVVVASWDGADVENDPDRSAEQEYTDGLLVYRSEGDDIADGEEGYSSSAVSEEEVKYDPSVWQSVIRYGPEDKEIHPAVRGTASAVVTVRTAEGAVEGDGEGGEGEGEGGTPGGWHPQLAHLPQLPHPLRKRLQVVPAAGEGERDKFKCLYLLVETAVAVRQREKEADELPV

Similarity

Belongs to the adenylate kinase family.
Belongs to the MCM family.

Uniprot

C0KWE9   H9J3S1   B8Y9D1   A0A2H1VUX8   A0A2A4K5S1   A0A212F3W8   + More
A0A3S2NUR2   A0A194PP62   A0A1E1WVG8   A0A2W1BIY9   A0A194QXZ1   A0A2A4KAY0   A0A2H1VQ46   A0A2W1BHR6   A0A0L7LDY1   H9J9C4   A0A0T6B0Q6   A0A1W4WK63   A0A1W4WW72   D6WTB7   A0A1Y1L0S3   U4UBP6   N6U0C7   J3JYU1   A0A067RN17   A0A0C9R0G7   A0A2A3E924   A0A2J7R5E8   A0A0R1DUE7   Q7K380   Q7JR08  

Pubmed

19121390    22118469    26354079    28756777    26227816    18362917    + More
19820115    28004739    23537049    22516182    24845553    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

FJ643616    ACN38265.1    BABH01028865    FJ502823    FJ502824    ACL54971.1    + More
ODYU01004598    SOQ44647.1    NWSH01000119    PCG79376.1    AGBW02010485    OWR48424.1    RSAL01000070    RVE49194.1    KQ459598    KPI94529.1    GDQN01000066    JAT90988.1    KZ150162    PZC72700.1    KQ460949    KPJ10408.1    NWSH01000011    PCG80900.1    ODYU01003780    SOQ42965.1    KZ150052    PZC74388.1    JTDY01001496    KOB73733.1    BABH01004466    LJIG01016339    KRT80898.1    KQ971352    EFA06692.1    GEZM01068010    JAV67263.1    KB632281    ERL91329.1    APGK01054085    KB741247    ENN71992.1    BT128422    AEE63379.1    KK852527    KDR22010.1    GBYB01000296    JAG70063.1    KZ288322    PBC28225.1    NEVH01006994    PNF36065.1    CM000158    KRJ99442.1    AE013599    AY058750    AAG22280.2    AAL13979.1    BT003510    AAF58497.2    AAO39514.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000283053    UP000053268    UP000053240    + More
UP000037510    UP000192223    UP000007266    UP000030742    UP000019118    UP000027135    UP000242457    UP000235965    UP000002282    UP000000803   

PRIDE

C0KWE9    H9J3S1    B8Y9D1    H9J9C4    Q7K380    Q7JR08    + More

Pfam

PF05920   Homeobox_KN        + More
PF00493   MCM
PF07841   DM4_12

Interpro

IPR008422   Homeobox_KN_domain        + More
IPR001356   Homeobox_dom       
IPR009057   Homeobox-like_sf       
IPR000850   Adenylat/UMP-CMP_kin       
IPR027417   P-loop_NTPase       
IPR031327   MCM       
IPR003593   AAA+_ATPase       
IPR001208   MCM_dom       
IPR006631   DM4_12       

SUPFAM

SSF46689   SSF46689        + More
SSF52540   SSF52540       

CDD

cd00086  homeodomain
cd01428  ADK

ProteinModelPortal

C0KWE9   H9J3S1   B8Y9D1   A0A2H1VUX8   A0A2A4K5S1   A0A212F3W8   + More
A0A3S2NUR2   A0A194PP62   A0A1E1WVG8   A0A2W1BIY9   A0A194QXZ1   A0A2A4KAY0   A0A2H1VQ46   A0A2W1BHR6   A0A0L7LDY1   H9J9C4   A0A0T6B0Q6   A0A1W4WK63   A0A1W4WW72   D6WTB7   A0A1Y1L0S3   U4UBP6   N6U0C7   J3JYU1   A0A067RN17   A0A0C9R0G7   A0A2A3E924   A0A2J7R5E8   A0A0R1DUE7   Q7K380   Q7JR08  

PDB

6FQP     E-value=1.76261e-26,     Score=296

KEGG

100286758    K19383 homeobox protein TGIF1 | (RefSeq) Achi; achintya

PATHWAY

04350    TGF-beta signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0005634   GO:0006355   GO:0003677   GO:0005524   GO:0019205   GO:0006139   GO:0006270   GO:0007283   GO:0045893   GO:0001228   GO:0006396   GO:0005615   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR11630  

Subcellular location

Nucleus  

Length:

360

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00189

outside

1  -  360

 

 

Pi

18.482025

Theta

19.665555

Tajima's D

0.051253

CLR

0.455862

CSRT

0.380930953452327

Interpretation

Uncertain