Gene

KWMTBOMO11736  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004193

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_CD109_antigen-like?_partial_[Bombyx_mori]

Location

Bomo_Chr19(+):13029214-13044340      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.005

CDS

ATGAATGAGTTCGCGGGGCTGGCGGTGCTGAGCGACGTGGCGGTGACGCGGCGGCGCGGCGCCTGCAACGCGTCGCTGGGGCTGGCCGAGTGTCTGGACGGCGCCTGCTACCCGCTCGCCAAGCGCTGCGACGCCGCCTACGACTGCGCCGACAGGACCGACGAGGCCAACTGTGCGGAGGAGAGAAGCGAGTTGGAGCTGAGCCACTTCCGCAAGTTCCGGTTCAACCGCGTGCAGCGCCAGTACGACAACGTGTGGGCCTGGAGGGACGTCAACATCGGCCCGCACGGACGCTACGTGTTCACCCTCGACGTGCCGCAGGTGCCAGCCCACTGGACCGTGTCAGCCTTCAGCATGTCTCCTTCACTTGGACTAGGAATGCTGACGGAACCCATTACGTACGTGGGAGTGCAGCCGTTCTTCATAACAGTGGAAGGACCGGACTCGTGTCGTCAGGGCGAGCAGGTCGGCCTGCGCGTGGTCGTGTTCAACTACCAGCTGCAGAACATCGAGGCCGTCGTCGTGCTGGAGGCCTCGCCCGACTATAAGTTTGTTCACGTCGAGGAGAACGGCATTGTCCGCTCGTACAACCCGCGCACGTCGTTCGGCGAGCACCAGTTCTTCGTGTACGTGCTGGCGGGCGCGGCCAGCACCGTGCACGTGCCCGTGGTGGCGGCGCGCCTCGGCACCGTGCACGTGCGTCTGCACGCCGCCGCGCTGCTCGGCACGCACTCCTACACCAAGACCATACACGTGCTGGCGGACGGCGTGCCCCAGCACCGGCACCAGGCCGTGCTGCTGGACCTGTCCAACCGCGCGTACGTGTTCCAGTACATGCACGTGAACGTGACGGAGACGCCCGTCATCCCGTACGAGGTGGACCGCTACTACGTGTTCGGCTCCAACCAGGCGCGCGTCAGCGTGGTCGGCGACGTGGTGGGGCCGCTGTTCCCCACCATGCCCGTCAACGCCACCAGCCTCCTGGACCTGCCGATGGACTCTGCCGAACAGAACATGTTCAGTTTCGCCGCGAACATGTACTTCACCCTGTACATGCGGCTGATCAACCAGAGGAACAGGACCTTGGAGCGCGAGGCGTTCTACCACATGAACATCCTGTACCAGCGGCAGCTGTCCTTCATGAAACCCGACGGATCCTTCAGCCTGTTCCGAAGCGACTGGAACCAGTCGTCGTCCAGTGTGTGGCTCACGTCGTTCTGCGCCAAGATCTTCCAAGACGCCTCCTTCAACGAGTGGGAGAACTTCATCTACATCGACCCGGACGTGATATCGATGGCGGTGTCGTGGGTCCTTGACCACCAGACGCCGGAGGGCGCCTTCTACGAGGTGACGTGGCTGCCCAACAGGAACGACAACTCCAGCCTCGTCGTGCCCAAAAACAGCAGTCTGTACCGGGAGTACCTCAGCCACGCGAACTACGACCCCACCATAGTCGAGACTAAAGATTCGTTGATAATCCAGCGGAACATAACGCTGACGGCGCAGGTCGTCATCACGCTCGAGACCGTCAAGAACTTGAAGGACATCGGAGTCCGGGAGGGCCTGGCGGCGCGCGTGGCGTCGAGCCAGCAGCGCGGCGCGGCGTGGCTGGAGCGGCACCTGCGCGCGCTGCAGGACGCGGGCGAGCCCTACGCGCTGGCGCTGGTCGCGCACGCGCTGTCCGTGGCGCGCGCGCCCGCCGCCGACCACGCCTACCGCCTGCTCAAGCAGAGGGAGCGGTCCGAGGGTGGCCTAGTATACTGGGGCAAAGAACCAGTACCCCAGCCTCCGTACAAGATGGAAAACCAGAAGCCTTTCCTCCTGCCCCGGCTGCCGTACAAGTACGACTCCAACAACATAGCCACCACGGCCTTCGCGCTGCTGGCCTGCATGGACCACCAGGACATCAACGAACCCATCGTCATGTGGCTGAACGCTCAGAGGCTCAAGGACGGAGGGTGGGGCTCGACGCAGGACACGTACATAGCGCTGCGGGCCCTCATCGAGTACACGAACCGCAAACGTCTCCGCGACGTCAGCTCGCTCACCGTGGAGGTGGACGCCGTCGCTCTGGGGGGCACCACGCGCACGCTGCACGTGGACAACGCCAACCTGGCCGTCATGCAGAGCGTGCAGATCCCGGAGGCGTGGGGCACGGTGAAGGTGACGGCGCGCGGCGCGGGGTTCGCCATCCTGCAGATGTCGGTGACGTACAACGTGGACATCCCGCGCTTCCTCACGCCGCCCCCGCTGCACGCCTTCGAGCTGCTCTCGCACCAGCACTACTACGGACGGAACCAGTCGCACATCATGTTCCAGGCCTGCGCCAGCTGGACCCTAGAGGAGGAGAGTCCTCGCTCGGGCATGGCGGTGCTGGAGGCGGGGGTCCCGACGGGGTACCGCATCCAGCAGCAGGCGCTGGACGCCTACGTGCTGTCCCGCTCCGTGCCCACGCTGCAGAGGGCCCGATACACGCCCGTCAAACTATTCTTCTATTTTGAATATTTGTCCCGGGAGCCGACGTGCGTGAACTTCACGCTGGAGCGCTGGTACCCGGTCGCGAACATGTCCCGGTACTTGTCCCTCAAGGTCTACGACTACTACGCGCCAGAGCGGTACAACGAGACGATAGTGGACGCGCTTCCGACCTACCTGCTGAACATCTGCGAAGTGTGCGGCTCGTCCCAATGCCCGTACTGCGCGATATACAACGCCGCCGCCCGACCCCGCCACGCCGCGCCGCTCGCGCTCGCCACTGTCATGTCAATAGCCGCGCGCCATCTGTACGGGACGCTCGGAGCGCTATAG

Protein

MNEFAGLAVLSDVAVTRRRGACNASLGLAECLDGACYPLAKRCDAAYDCADRTDEANCAEERSELELSHFRKFRFNRVQRQYDNVWAWRDVNIGPHGRYVFTLDVPQVPAHWTVSAFSMSPSLGLGMLTEPITYVGVQPFFITVEGPDSCRQGEQVGLRVVVFNYQLQNIEAVVVLEASPDYKFVHVEENGIVRSYNPRTSFGEHQFFVYVLAGAASTVHVPVVAARLGTVHVRLHAAALLGTHSYTKTIHVLADGVPQHRHQAVLLDLSNRAYVFQYMHVNVTETPVIPYEVDRYYVFGSNQARVSVVGDVVGPLFPTMPVNATSLLDLPMDSAEQNMFSFAANMYFTLYMRLINQRNRTLEREAFYHMNILYQRQLSFMKPDGSFSLFRSDWNQSSSSVWLTSFCAKIFQDASFNEWENFIYIDPDVISMAVSWVLDHQTPEGAFYEVTWLPNRNDNSSLVVPKNSSLYREYLSHANYDPTIVETKDSLIIQRNITLTAQVVITLETVKNLKDIGVREGLAARVASSQQRGAAWLERHLRALQDAGEPYALALVAHALSVARAPAADHAYRLLKQRERSEGGLVYWGKEPVPQPPYKMENQKPFLLPRLPYKYDSNNIATTAFALLACMDHQDINEPIVMWLNAQRLKDGGWGSTQDTYIALRALIEYTNRKRLRDVSSLTVEVDAVALGGTTRTLHVDNANLAVMQSVQIPEAWGTVKVTARGAGFAILQMSVTYNVDIPRFLTPPPLHAFELLSHQHYYGRNQSHIMFQACASWTLEEESPRSGMAVLEAGVPTGYRIQQQALDAYVLSRSVPTLQRARYTPVKLFFYFEYLSREPTCVNFTLERWYPVANMSRYLSLKVYDYYAPERYNETIVDALPTYLLNICEVCGSSQCPYCAIYNAAARPRHAAPLALATVMSIAARHLYGTLGAL

Uniprot

H9J3V4   A0A2A4K5L5   A0A3S2M210   A0A194PP72   A0A2W1BBP4   A0A212F3V4   + More
A0A2A4K605   A0A026WYP9   A0A3L8DRJ9   E9IZ92   A0A0J7NU77   A0A0L7QQH7   A0A2A3EUP1   A0A1V1FKM0   A0A2J7PJ91   A0A088A9Z0   A0A1B6D127   A0A1I8N7Q0   T1PCV5   T1PFC5   A0A067R0N0   A0A023F4J8   A0A1I8P6G5   E1ZYV5   E2BMM7   A0A1A9WXK7   A0A1A9XEP9   A0A1B0C3H6   A0A1B0FEH7   E0VLM1   D6WR12   A0A1A9Z7W2   A0A0P4VGJ9   A0A1A9V873   A0A2H4N0Q2   A0A0K8WIV5   B4JC03   A0A2H8TLS3   K7IN46   B4MUI3   A0A0A1WXP7   A0A195B2P3   B4KEC4   A0A232F4N3   A0A1W4WJK7   B4LSL8   A0A195CH69   F4X6P9   B4NWD3   A0A158NFT4   W4VRF5   W8AU71   A0A3B0JIK6   A0A2S2P5T5   B3N700   A0A3B0K8T3   J9KAR6   A0A195E6U7   A0A0M4E7I1   Q9VLT3   A0A1J1IH12   A0A1W4VWA1   B4Q695   A0A195F174   B4HYE4   B4H8S4   Q29L41   B3MMX3   A0A1Y1K3A7   Q16ML5   A0A1S4FVT1   A0A1Q3G176   A0A182G988   A0A1Q3G198   A0A1Q3G1A3   A0A023EWE3   A0A1B0DDW4   A0A151XCA3   A0A182PLT4   A0A182NU17   A0A182QBP8   A0A182IC44   Q7Q4I0   A0A182UU83   A0A182K3J6   A0A182RIR5   A0A182LWS0   A0A182VUE7   A0A084WH46   A0A2M4B942   W5J7R0   A0A2M4A643   A0A336LJG8   A0A336LMP6   A0A310SHT3   A0A2M3YYW7   A0A1B0GHR8   A0A182F3H8   A0A182XFW0  

Pubmed

19121390    26354079    28756777    22118469    24508170    30249741    + More
21282665    28410430    25315136    24845553    25474469    20798317    20566863    18362917    19820115    27129103    17994087    20075255    25830018    28648823    21719571    17550304    21347285    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    15632085    28004739    17510324    26483478    24945155    12364791    24438588    20920257    23761445   

EMBL

BABH01028850    BABH01028851    BABH01028852    BABH01028853    BABH01028854    BABH01028855    + More
NWSH01000119    PCG79359.1    RSAL01000070    RVE49188.1    KQ459598    KPI94539.1    KZ150162    PZC72692.1    AGBW02010485    OWR48415.1    PCG79358.1    KK107063    EZA60963.1    QOIP01000005    RLU23037.1    GL767119    EFZ14127.1    LBMM01001634    KMQ95965.1    KQ414786    KOC60872.1    KZ288186    PBC34859.1    FX985339    BAX07352.1    NEVH01024950    PNF16402.1    GEDC01017924    JAS19374.1    KA646617    AFP61246.1    KA646870    AFP61499.1    KK852792    KDR16460.1    GBBI01002540    JAC16172.1    GL435242    EFN73645.1    GL449275    EFN83045.1    JXJN01024953    CCAG010005473    DS235274    EEB14277.1    KQ971351    EFA07485.1    GDKW01004126    JAI52469.1    KY653075    KY986533    ATU47269.1    ATU47287.1    GDHF01001226    JAI51088.1    CH916368    EDW04106.1    GFXV01003096    MBW14901.1    CH963857    EDW76178.2    GBXI01011099    GBXI01000847    JAD03193.1    JAD13445.1    KQ976662    KYM78474.1    CH933807    EDW12892.1    NNAY01001024    OXU25448.1    CH940649    EDW64840.1    KQ977754    KYN00053.1    GL888818    EGI57831.1    CM000157    EDW88450.1    ADTU01014723    GANO01003251    JAB56620.1    GAMC01014150    GAMC01014149    JAB92405.1    OUUW01000006    SPP82035.1    GGMR01012125    MBY24744.1    CH954177    EDV59296.1    SPP82036.1    ABLF02029698    KQ979568    KYN20816.1    CP012523    ALC38727.1    AE014134    AY058526    AAF52601.1    AAL13755.1    CVRI01000048    CRK99058.1    CM000361    CM002910    EDX04171.1    KMY88916.1    KQ981864    KYN34320.1    CH480818    EDW52074.1    CH479225    EDW35133.1    CH379061    EAL32983.1    CH902620    EDV30998.1    GEZM01099385    JAV53357.1    CH477858    EAT35575.1    GFDL01001490    JAV33555.1    JXUM01153637    JXUM01153638    GFDL01001475    JAV33570.1    GFDL01001454    JAV33591.1    GAPW01000018    JAC13580.1    AJVK01005471    AJVK01005472    AJVK01005473    AJVK01005474    KQ982314    KYQ57983.1    AXCN02000809    APCN01000774    APCN01000775    AAAB01008964    EAA12257.4    AXCM01003842    ATLV01023789    KE525346    KFB49540.1    GGFJ01000207    MBW49348.1    ADMH02001920    ETN60497.1    GGFK01002953    MBW36274.1    UFQT01000024    SSX18040.1    SSX18041.1    KQ765605    OAD53855.1    GGFM01000680    MBW21431.1    AJWK01005546    AJWK01005547    AJWK01005548    AJWK01005549    AJWK01005550   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000053097    + More
UP000279307    UP000036403    UP000053825    UP000242457    UP000235965    UP000005203    UP000095301    UP000027135    UP000095300    UP000000311    UP000008237    UP000091820    UP000092443    UP000092460    UP000092444    UP000009046    UP000007266    UP000092445    UP000078200    UP000001070    UP000002358    UP000007798    UP000078540    UP000009192    UP000215335    UP000192223    UP000008792    UP000078542    UP000007755    UP000002282    UP000005205    UP000268350    UP000008711    UP000007819    UP000078492    UP000092553    UP000000803    UP000183832    UP000192221    UP000000304    UP000078541    UP000001292    UP000008744    UP000001819    UP000007801    UP000008820    UP000069940    UP000092462    UP000075809    UP000075885    UP000075884    UP000075886    UP000075840    UP000007062    UP000075903    UP000075881    UP000075900    UP000075883    UP000075920    UP000030765    UP000000673    UP000092461    UP000069272    UP000076407   

PRIDE

H9J3V4    B4NWD3    Q9VLT3   

Pfam

PF07703   A2M_BRD        + More
PF07677   A2M_recep
PF00207   A2M
PF07678   TED_complement
PF00057   Ldl_recept_a
PF17791   MG3
PF01835   MG2

Interpro

IPR009048   A-macroglobulin_rcpt-bd        + More
IPR013783   Ig-like_fold       
IPR002172   LDrepeatLR_classA_rpt       
IPR036055   LDL_receptor-like_sf       
IPR011626   Alpha-macroglobulin_TED       
IPR001599   Macroglobln_a2       
IPR011625   A2M_N_BRD       
IPR036595   A-macroglobulin_rcpt-bd_sf       
IPR008930   Terpenoid_cyclase/PrenylTrfase       
IPR041555   MG3       
IPR002890   MG2       

SUPFAM

SSF57424   SSF57424        + More
SSF49410   SSF49410       
SSF48239   SSF48239       

Gene 3D

2.60.40.10     2.60.40.690     4.10.400.10    

CDD

cd00112  LDLa

ProteinModelPortal

H9J3V4   A0A2A4K5L5   A0A3S2M210   A0A194PP72   A0A2W1BBP4   A0A212F3V4   + More
A0A2A4K605   A0A026WYP9   A0A3L8DRJ9   E9IZ92   A0A0J7NU77   A0A0L7QQH7   A0A2A3EUP1   A0A1V1FKM0   A0A2J7PJ91   A0A088A9Z0   A0A1B6D127   A0A1I8N7Q0   T1PCV5   T1PFC5   A0A067R0N0   A0A023F4J8   A0A1I8P6G5   E1ZYV5   E2BMM7   A0A1A9WXK7   A0A1A9XEP9   A0A1B0C3H6   A0A1B0FEH7   E0VLM1   D6WR12   A0A1A9Z7W2   A0A0P4VGJ9   A0A1A9V873   A0A2H4N0Q2   A0A0K8WIV5   B4JC03   A0A2H8TLS3   K7IN46   B4MUI3   A0A0A1WXP7   A0A195B2P3   B4KEC4   A0A232F4N3   A0A1W4WJK7   B4LSL8   A0A195CH69   F4X6P9   B4NWD3   A0A158NFT4   W4VRF5   W8AU71   A0A3B0JIK6   A0A2S2P5T5   B3N700   A0A3B0K8T3   J9KAR6   A0A195E6U7   A0A0M4E7I1   Q9VLT3   A0A1J1IH12   A0A1W4VWA1   B4Q695   A0A195F174   B4HYE4   B4H8S4   Q29L41   B3MMX3   A0A1Y1K3A7   Q16ML5   A0A1S4FVT1   A0A1Q3G176   A0A182G988   A0A1Q3G198   A0A1Q3G1A3   A0A023EWE3   A0A1B0DDW4   A0A151XCA3   A0A182PLT4   A0A182NU17   A0A182QBP8   A0A182IC44   Q7Q4I0   A0A182UU83   A0A182K3J6   A0A182RIR5   A0A182LWS0   A0A182VUE7   A0A084WH46   A0A2M4B942   W5J7R0   A0A2M4A643   A0A336LJG8   A0A336LMP6   A0A310SHT3   A0A2M3YYW7   A0A1B0GHR8   A0A182F3H8   A0A182XFW0  

PDB

4ACQ     E-value=1.3449e-28,     Score=318

KEGG

101736964    no KO assigned | (RefSeq) CD109 antigen-like

GO

GO:0004866   GO:0005615   GO:0016021   GO:0008233   GO:0019991   GO:0050832   GO:0008258   GO:0016327   GO:0007391   GO:0035159   GO:0005198   GO:0016323   GO:0006910   GO:0016328   GO:0016324   GO:0005918   GO:0005886   GO:0005515   GO:0005576   GO:0005524   GO:0006139   GO:0019205   GO:0043564   GO:0006418   GO:0003824  

Length:

935

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.647850000000001

Exp number, first 60 AAs:

0.00063

Total prob of N-in:

0.01597

outside

1  -  935

 

 

Pi

16.523149

Theta

14.761868

Tajima's D

-0.776743

CLR

1.069855

CSRT

0.187190640467977

Interpretation

Uncertain