Gene

KWMTBOMO11729

Annotation

hypothetical_protein_RF55_12429_[Lasius_niger]

Location

Bomo_Chr19(+):12829034-12831141      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.132

CDS

ATGGAATCGTACCAATTACATGGTTTTGCTGACAGTTCGGAGGCTGGCTATGGAGCTGTGGTTTATCTTCGAACTCTTAATTCCGATGGTCATATAGGAGTATCCTTTTTATGTGCTAAGTCTCGCGTGGCCCCAATTAGGAGAGTTTCATTGCCGAGACTAGAGCTCTGCGCTGCGGTTCTGCTCGCTGACCTGCTCAAATTCGTAAAAGAAGTGTATGTACCGTTACTTCCGCTTTCTGATACATTTGCTTGGTCAGATTCAACGGTAACTCTGTCATGGATTCGTGGCCATTCCTCGCGTTGGAAAACATTTGTTGCTAATAGGGTTAGTCATATCCAAGAAACTGTCCCCGAAACTCACTGGAATCACGTGCGCTCTAATGAAAATCCTGCGGACATAGCTTCCCGCGGTACGTGTCCGAGCGACCTACTCCAGAGTGAGTTATGGTGGGCGGGACCGAGGTGGCTTCGGCAACCTTCATCTTCATGGCCTTCAAATTCCGGTCTCGAGGTGAACGAGACTGATATGCTTGCCGAGGAACGCTGTTTTTCGTTGGTCGTGAATGATGAACCTAACTTTATCGATTCTTTGCTCGAAAGGTTTTCATCAATTCGTAAGGTTCAACGTATTATTGGTTATTGTCTTCGTTTTATCAGAAATGCTAACAAAAAACAGACACGTGTTCCGGGTACCTTTTTAGGTCGTGCAGAACTTCATGGGGCCCTGATGACGATTACCAAGCGAATTCAATTTCTCAACTTTCAGGATGAAATTCGTAAGCTCGAGAATGGTATACCATTACCCAAACCGTGGAGAAAACTCAATCCATTCCTGGACGACCAAGGAGTTGTCAGGGTGGGCGGCCGTTTGTCTCGTTCTGGTCTTGAGTTTAGTCATAAGCATCCTGCTCTGTTGCCGCGTCATTCTAGGTTCACATACATGATCATCGAAGCAATTCACAAAGAGAATTGTCATCCTGGGTTGGGAACGACGCAATATCTTTTGATGCAGCTGTTTTGGGTATTCTCTTCTAAACGTGCTATTCGTCATTGCTTGTCAAAATGTGTTTCGTGTTATAAAACTAATCCGAAATTATTGGAACCATTCATGAGTGACTTGCCGGCTTCTCGTGTGAATCAAGTCAAACCATTCTCTATTGTTGGCGTGGACTACGCAGGTCCATTCCAAATCAAACTCGGTAAGCATCGCGGTGCCAAAATCGCTCGTGTCTCCAAGCTTCACGCCAACCCTGATGGCGTGGTTCGTATTGCCACTGTCCGTACAGCCAATGGCAAATTCTACACTAGGCCATTAACGAAGTTAGCTCCCCTACCTATTTATTCTGATTAA

Protein

MESYQLHGFADSSEAGYGAVVYLRTLNSDGHIGVSFLCAKSRVAPIRRVSLPRLELCAAVLLADLLKFVKEVYVPLLPLSDTFAWSDSTVTLSWIRGHSSRWKTFVANRVSHIQETVPETHWNHVRSNENPADIASRGTCPSDLLQSELWWAGPRWLRQPSSSWPSNSGLEVNETDMLAEERCFSLVVNDEPNFIDSLLERFSSIRKVQRIIGYCLRFIRNANKKQTRVPGTFLGRAELHGALMTITKRIQFLNFQDEIRKLENGIPLPKPWRKLNPFLDDQGVVRVGGRLSRSGLEFSHKHPALLPRHSRFTYMIIEAIHKENCHPGLGTTQYLLMQLFWVFSSKRAIRHCLSKCVSCYKTNPKLLEPFMSDLPASRVNQVKPFSIVGVDYAGPFQIKLGKHRGAKIARVSKLHANPDGVVRIATVRTANGKFYTRPLTKLAPLPIYSD

Uniprot

V5GHM7   A0A0J7KD57   V5GC07   A0A1Y1KMX0   A0A2S2R5S9   A0A0J7K7U0   + More
A0A0J7KC70   D6WY83   A0A0J7KDN6   A0A1B6MFR0   A0A1Y1LIG5   A0A146M0N4   E2ARC4   A0A1B6JE15   A0A023F096   J9JNP4   A0A2S2PED9   A0A1B6GMH9   A0A2S2QPS5   X1WY95   X1XIA7   X1XU26   X1XMM8   A0A2S2N9D0   J9LPA9   X1WSS7   X1XTX7   A0A2S2PM34   J9KLD6   A0A3L8DZP4   A0A1Y1KVX6   E1ZWH0   A0A1B6MUZ9   A0A1B6KZV2   J9KD60   A0A0J7KBV8   A0A182IER0   A0A0J7K7S0   A0A0J7KCV7   A0A0J7KBZ0   A0A0J7N189   W8BHD4   J9JLG6   A0A0J7K9A7   A0A1Y1L2Y2   A0A3L8D7N7   A0A0J7K907   A0A1S3T8T7   A0A0J7KBS8   A0A2S2NLW5   A0A0J7KCR4   A0A226D417   A0A3L8D7Q9   A0A1Y1LBZ3   X1XEA7   A0A0J7K952   A0A1B6CM38   A0A1B6LDH0   A0A2S2PUJ2   A0A226CW75   A0A182RKT7   A0A0J7KJY9   A0A0J7JZS0   A0A0J7KD75   A0A226CWA5   J9JVD6   A0A226DMG9   A0A0J7N5C9   A0A0J7N536   A0A0J7N2B8   A0A226E226   A0A0A9VS37   A0A182HA33   A0A1S3DNE5   X1WYQ8   A0A2S2P3E6   A0A1Y1N4T1   A0A0A9WIR2   A0A0V0VDM6   A0A0J7KCI2   A0A0J7N465   A0A1U8N896   A0A2S2NCY5   X1XU46   A0A0J7K9I5   W8B1J3   A0A0J7KIZ4   J9KCB6   X1WNS5   K7J7V9   A0A0J7KNK6   A0A2L2YSY1   A0A0V0UWT4   A0A226EUF5   A0A1Y1N1H8   D7EKN1   A0A1S3DIZ2   A0A087T9T6   A0A1Y1MTT1   A0A0N0PAG9  

Pubmed

28004739    18362917    19820115    26823975    20798317    25474469    + More
30249741    24495485    25384727    25401762    26483478    25893780    20075255    26561354    26354079   

EMBL

GALX01004947    JAB63519.1    LBMM01009442    KMQ88136.1    GALX01000776    JAB67690.1    + More
GEZM01085145    GEZM01085143    JAV60187.1    GGMS01016125    MBY85328.1    LBMM01012238    KMQ86334.1    LBMM01009863    KMQ87831.1    KQ971357    EFA07702.1    LBMM01009202    KMQ88311.1    GEBQ01005223    JAT34754.1    GEZM01054765    JAV73413.1    GDHC01006469    JAQ12160.1    GL442026    EFN64015.1    GECU01010337    JAS97369.1    GBBI01004276    JAC14436.1    ABLF02005684    GGMR01015135    MBY27754.1    GECZ01006169    JAS63600.1    GGMS01010524    MBY79727.1    ABLF02030854    ABLF02067347    ABLF02035110    ABLF02001506    ABLF02008029    ABLF02035899    ABLF02037719    ABLF02046327    ABLF02064627    ABLF02017373    GGMR01000737    MBY13356.1    ABLF02035780    ABLF02017056    ABLF02006304    ABLF02036268    GGMR01017890    MBY30509.1    ABLF02013940    ABLF02036313    ABLF02066938    ABLF02066950    QOIP01000002    RLU25950.1    GEZM01072348    JAV65549.1    GL434835    EFN74469.1    GEBQ01007199    GEBQ01000222    JAT32778.1    JAT39755.1    GEBQ01022991    GEBQ01006185    JAT16986.1    JAT33792.1    ABLF02041863    LBMM01009941    KMQ87772.1    APCN01009161    LBMM01012392    KMQ86241.1    LBMM01009403    KMQ88162.1    LBMM01009964    KMQ87756.1    LBMM01012077    KMQ86420.1    GAMC01005870    JAC00686.1    ABLF02030698    ABLF02030705    ABLF02030709    LBMM01011283    KMQ86917.1    GEZM01068861    GEZM01068860    JAV66730.1    QOIP01000012    RLU16284.1    LBMM01011516    KMQ86784.1    LBMM01009888    KMQ87813.1    GGMR01005535    MBY18154.1    LBMM01009551    KMQ88039.1    LNIX01000036    OXA39969.1    RLU15928.1    GEZM01060254    JAV71154.1    ABLF02006652    ABLF02006653    ABLF02026952    ABLF02038350    ABLF02038362    LBMM01011245    KMQ86943.1    GEDC01022769    JAS14529.1    GEBQ01018232    JAT21745.1    GGMR01020500    MBY33119.1    LNIX01000063    OXA37199.1    LBMM01006490    KMQ90572.1    LBMM01018894    KMQ83668.1    LBMM01009212    KMQ88302.1    LNIX01000069    OXA36894.1    ABLF02008594    LNIX01000016    OXA46198.1    LBMM01009746    KMQ87900.1    LBMM01009898    KMQ87805.1    LBMM01011492    KMQ86800.1    LNIX01000007    OXA51795.1    GBHO01044457    JAF99146.1    JXUM01030959    KQ560903    KXJ80414.1    ABLF02028666    ABLF02066713    GGMR01011253    MBY23872.1    GEZM01012999    JAV92824.1    GBHO01035277    JAG08327.1    JYDK01000531    KRX61644.1    LBMM01009688    KMQ87939.1    LBMM01010417    KMQ87475.1    GGMR01002421    MBY15040.1    ABLF02003339    ABLF02058001    LBMM01011244    KMQ86944.1    GAMC01011600    GAMC01011596    JAB94955.1    LBMM01006671    KMQ90403.1    ABLF02042264    ABLF02055921    AAZX01023505    LBMM01005079    KMQ91831.1    IAAA01051064    LAA11179.1    JYDK01000686    JYDK01000685    KRX55769.1    KRX55800.1    LNIX01000002    OXA60848.1    GEZM01018628    JAV90116.1    DS497760    EFA13221.1    KK114194    KFM61875.1    GEZM01021505    JAV88969.1    KQ458473    KPJ05885.1   

Proteomes

UP000036403    UP000007266    UP000000311    UP000007819    UP000279307    UP000075840    + More
UP000087766    UP000198287    UP000075900    UP000069940    UP000249989    UP000079169    UP000054673    UP000189702    UP000002358    UP000054359    UP000053268   

Pfam

PF17921   Integrase_H2C2        + More
PF05585   DUF1758
PF00665   rve
PF05380   Peptidase_A17
PF18701   DUF5641
PF00078   RVT_1
PF03564   DUF1759
PF16528   Exo84_C
PF17919   RT_RNaseH_2
PF17917   RT_RNaseH

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR008737   Peptidase_asp_put       
IPR040676   DUF5641       
IPR012337   RNaseH-like_sf       
IPR008042   Retrotrans_Pao       
IPR001584   Integrase_cat-core       
IPR000477   RT_dom       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR005312   DUF1759       
IPR001995   Peptidase_A2_cat       
IPR000727   T_SNARE_dom       
IPR001969   Aspartic_peptidase_AS       
IPR032403   Exo84_C       
IPR016159   Cullin_repeat-like_dom_sf       
IPR017907   Znf_RING_CS       
IPR041373   RT_RNaseH       
IPR041577   RT_RNaseH_2       

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630       
SSF57756   SSF57756       
SSF74788   SSF74788       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

V5GHM7   A0A0J7KD57   V5GC07   A0A1Y1KMX0   A0A2S2R5S9   A0A0J7K7U0   + More
A0A0J7KC70   D6WY83   A0A0J7KDN6   A0A1B6MFR0   A0A1Y1LIG5   A0A146M0N4   E2ARC4   A0A1B6JE15   A0A023F096   J9JNP4   A0A2S2PED9   A0A1B6GMH9   A0A2S2QPS5   X1WY95   X1XIA7   X1XU26   X1XMM8   A0A2S2N9D0   J9LPA9   X1WSS7   X1XTX7   A0A2S2PM34   J9KLD6   A0A3L8DZP4   A0A1Y1KVX6   E1ZWH0   A0A1B6MUZ9   A0A1B6KZV2   J9KD60   A0A0J7KBV8   A0A182IER0   A0A0J7K7S0   A0A0J7KCV7   A0A0J7KBZ0   A0A0J7N189   W8BHD4   J9JLG6   A0A0J7K9A7   A0A1Y1L2Y2   A0A3L8D7N7   A0A0J7K907   A0A1S3T8T7   A0A0J7KBS8   A0A2S2NLW5   A0A0J7KCR4   A0A226D417   A0A3L8D7Q9   A0A1Y1LBZ3   X1XEA7   A0A0J7K952   A0A1B6CM38   A0A1B6LDH0   A0A2S2PUJ2   A0A226CW75   A0A182RKT7   A0A0J7KJY9   A0A0J7JZS0   A0A0J7KD75   A0A226CWA5   J9JVD6   A0A226DMG9   A0A0J7N5C9   A0A0J7N536   A0A0J7N2B8   A0A226E226   A0A0A9VS37   A0A182HA33   A0A1S3DNE5   X1WYQ8   A0A2S2P3E6   A0A1Y1N4T1   A0A0A9WIR2   A0A0V0VDM6   A0A0J7KCI2   A0A0J7N465   A0A1U8N896   A0A2S2NCY5   X1XU46   A0A0J7K9I5   W8B1J3   A0A0J7KIZ4   J9KCB6   X1WNS5   K7J7V9   A0A0J7KNK6   A0A2L2YSY1   A0A0V0UWT4   A0A226EUF5   A0A1Y1N1H8   D7EKN1   A0A1S3DIZ2   A0A087T9T6   A0A1Y1MTT1   A0A0N0PAG9  

KEGG

NA   

GO

GO:0015074   GO:0003676   GO:0008270   GO:0016021   GO:0004190  

Length:

450

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03545

Exp number, first 60 AAs:

0.01425

Total prob of N-in:

0.00200

outside

1  -  450

 

 

Pi

16.670344

Theta

26.343608

Tajima's D

-1.006293

CLR

12.539634

CSRT

0.138043097845108

Interpretation

Uncertain