Silkworm Genome Informatics Database

Gene

KWMTBOMO11727

Pre Gene Modal

BGIBMGA004188

Annotation

PREDICTED:_ATP-binding_cassette_sub-family_A_member_3-like_[Bombyx_mori]

Location

Bomo_Chr19(+):12808204-12809696 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.226 Extracellular Reliability : 1.271

CDS

ATGGACGCGCTGTGCTCGTCGATAGCCATCCTGTCGGCGGGCGGCGTGCGCGCGCTGGGCTCGGGCGCCGCACTGCGCGCCGCGCACGCCGCCGGACACGCGCTGCTGCTCAAGATCGCGCACGCACCTGCCGCAGACGAAGTGGACGGTGCCAAGGGTGAGCTGGACCGGCTGAAGGGCGTGCTGCACCAGTCCTTCGACTGCACCCTCAAGGACGAGCACAAGACGATGCTGCACTACCATATAAACGAAACAATGAAATATTCGGAACTCTTCACTCAGCTCGAGGAACTAAAGGCCAACTTCCCCGGGCTCGTGGAGGACTATTCGGTCACGGAGACCACCCTGGAAGAGGTGTTCCTGTCTTTCGCCAAAGAACAAAATGAACCCGCGTCCGTATGA

Protein

MDALCSSIAILSAGGVRALGSGAALRAAHAAGHALLLKIAHAPAADEVDGAKGELDRLKGVLHQSFDCTLKDEHKTMLHYHINETMKYSELFTQLEELKANFPGLVEDYSVTETTLEEVFLSFAKEQNEPASV

Uniprot

H9J3U9 A0A2A4K545 A0A2W1BCS5 A0A194PTT1 A0A1B6DZ29 R7UPA9 + More

Pubmed

19121390 28756777 26354079 23254933

EMBL

BABH01028833 BABH01028834 NWSH01000149 PCG79038.1 KZ150130 PZC73059.1 + More
KQ459598 KPI94545.1 GEDC01031432 GEDC01006372 JAS05866.1 JAS30926.1 AMQN01007708 KB301235 ELU05777.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000014760

PRIDE

H9J3U9

Pfam

PF00005 ABC_tran

Interpro

IPR027417   P-loop_NTPase        + More
IPR003439   ABC_transporter-like
IPR026082   ABCA
IPR017871   ABC_transporter_CS
IPR003593   AAA+_ATPase
IPR026969   ABCA3

SUPFAM

SSF52540 SSF52540

ProteinModelPortal

H9J3U9 A0A2A4K545 A0A2W1BCS5 A0A194PTT1 A0A1B6DZ29 R7UPA9 + More

PDB

5XJY E-value=1.10067e-06, Score=119

KEGG

101736702 K05643 ATP-binding cassette, subfamily A (ABC1), member 3 | (RefSeq) ATP-binding cassette sub-family

PATHWAY

02010 ABC transporters - Bombyx mori (domestic silkworm)

GO

GO:0016021 GO:0005524 GO:0042626

PANTHER

PTHR19229 PTHR19229:SF98

Length:

133

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.80882

Exp number, first 60 AAs:

0.80882

Total prob of N-in:

0.14175

outside

1 - 133

Pi

26.886609

Theta

28.321172

Tajima's D

-0.201963

CLR

0.361847

CSRT

0.317734113294335

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics