Gene

KWMTBOMO11726

Pre Gene Modal

BGIBMGA004188

Annotation

PREDICTED:_ATP-binding_cassette_sub-family_A_member_3-like_[Bombyx_mori]

Location

Bomo_Chr19(+):12803424-12807646      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.677

CDS

ATGAATGCAAGCAACCAAATCAAGGACGTTCTGTTAGCGGACAACCTGCACAAGAGGTACCCCAAGATCTTCGGCAAGTCCTGCAACGCCGTCAAAGGAGTCAGTTTCTCGGTTAAGAAAGGAGAATGCTTTGGCCTCCTCGGCGTGAACGGAGCCGGCAAGTCTACCACCTTCAAGATGCTGACGGCCGAGGAGTGCGCCACTCGAGGCAACATTTTCGCGAACGGCTACCACCTGAAGCGCAGCGTCGGACCGTACCTCCGCTCCCTCGGCTACTGCCCACAATTCTTCGGGCTGGACGACTTCCTGACCGGCGCCCAGAACCTGGCCTTGCTGCTGACCCTGCGCGGACTCGACGTCGTCGACGTGAACGCCGAGGTCGCGTCCTGGATACAGATCGTAGGGCTGGAGAAGTACATGCACCGGCCCGTGTCGGGCTACAGCGGCGGCTGCAAGCGGCGGCTGGCGGCGGGCGCGGCGCTGGCGGCGGGCGCGGCCGTCACGCTGCTGGACGAGCCCACCGCGGGCGTGGACGTGGCCGCGCGCCGCCGCGTGTGGGCCGCGCTGCGCCGCGCGCTGCACCGGGGACGCGCCGTCGTCATCTCCTCGCACAGGCATTAG

Protein

MNASNQIKDVLLADNLHKRYPKIFGKSCNAVKGVSFSVKKGECFGLLGVNGAGKSTTFKMLTAEECATRGNIFANGYHLKRSVGPYLRSLGYCPQFFGLDDFLTGAQNLALLLTLRGLDVVDVNAEVASWIQIVGLEKYMHRPVSGYSGGCKRRLAAGAALAAGAAVTLLDEPTAGVDVAARRRVWAALRRALHRGRAVVISSHRH

Similarity

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.

Uniprot

A0A2W1BCS5   A0A194PTT1   A0A194R3K7   A0A2A4K545   A0A0F6PQM2   A0A212F3T3   + More
A0A2P8YJ86   A0A1B6EFI2   A0A1B6DK03   A0A1B6JS44   A0A1B6FQX5   A0A1B6FLT5   A0A1B6F8C5   A0A1B6MC35   A0A1B6G0W6   A0A1B6IZN0   A0A1B6MPR0   A0A2J7RIF1   A0A1B6CKN8   A0A2J7RIF3   A0A067QMM5   A0A1B6GZC0   A0A1B6HI75   A0A0N4XAZ4   A0A0D2WPE2   E4Y7D9   A0A1J1IJX5   A0A1W4WY30   A0A2G9V2A8   A0A0A7ARI5   E4XQ17   A0A2S2P9P8   A0A1B6GC71   A0A1Y3AWT5   A0A2S2QUV9   A0A1B6HGH5   J9K9B5   A0A1B6I525   A0A2R7W837   A0A0S7H6F6   A0A2H8TTL0   A0A0S7HAW5   A0A368GJA2   A0A0Q9XF97   A0A3P7C2C3   W6NGB2   A0A158QNT6   A0A0S7HA71   A0A0N4XMX0   A0A0C2GBZ7   A0A0D8XHI3   E4XHW7   T1IBQ4   H3C1X8   B4KIX1   H3D169   A0A0S7H654   A0A3B5PPH9   A0A3B5PRM2   A0A0L8I2K3   A0A146MPG2   M3ZRP8   A0A3Q3RQP1   A0A3B3YAD3   A0A3Q3LC94   W2T430   A0A3B3WRC0   A0A183T5C2   A0A3Q2Q6M2   A0A016WEL3   A0A016WC99   Q3YB24   A0A194PNI5   A0A183WPN0   A0A132ACH8   A0A183QDX2   A0A3P6R8D8   A0A3B3V8X0   A0A0M3K8V1   F1L0H8   A0A087XBS7   A0A3Q2YND9   A0A2B4RF03   A0A3P9HY39   A0A0K8TT98   A0A3P9L2H4   A0A3B3H814   A0A3B3I8Q3   A0A3P9L2N4   A0A3B3WR13   A0A3P9HY72   A0A3R5SPL4   A0A060YX36   A0A287AQ53   A0A161ALT0   A0A3S2MX29   A0A368GMG1   A0A1A8L276   A0A0K0E8W1  

Pubmed

28756777    26354079    25662100    22118469    29403074    24845553    + More
21097902    17994087    26856411    15496914    23542700    25730766    16454864    26555130    21685128    17554307    26369729    24755649   

EMBL

KZ150130    PZC73059.1    KQ459598    KPI94545.1    KQ460949    KPJ10426.1    + More
NWSH01000149    PCG79038.1    KM244036    AKC42329.1    AGBW02010485    OWR48406.1    PYGN01000555    PSN44315.1    GEDC01000674    JAS36624.1    GEDC01011313    JAS25985.1    GECU01005681    JAT02026.1    GECZ01017356    JAS52413.1    GECZ01018617    JAS51152.1    GECZ01023368    JAS46401.1    GEBQ01006481    JAT33496.1    GECZ01013694    JAS56075.1    GECU01015311    JAS92395.1    GEBQ01002122    JAT37855.1    NEVH01003500    PNF40614.1    GEDC01023308    JAS13990.1    PNF40610.1    KK853244    KDR09441.1    GECZ01001999    JAS67770.1    GECU01033338    JAS74368.1    UZAF01023585    VDO90494.1    KE346364    KJE92513.1    FN654307    CBY31539.1    CVRI01000048    CRK98753.1    KZ345046    PIO76516.1    KF906267    AHK05632.1    FN653099    CBY11903.1    GGMR01013564    MBY26183.1    GECZ01009744    JAS60025.1    MUJZ01056049    OTF72457.1    GGMS01012311    MBY81514.1    GECU01033938    JAS73768.1    ABLF02037149    ABLF02037152    ABLF02037161    GECU01025689    JAS82017.1    KK854443    PTY15893.1    GBYX01444795    JAO36625.1    GFXV01005779    MBW17584.1    GBYX01444793    JAO36627.1    JOJR01000128    RCN44473.1    CH933807    KRG03780.1    UYSL01006358    VDL67461.1    CAVP010058607    CDL94934.1    UZAF01017487    VDO42155.1    GBYX01444794    JAO36626.1    KN732949    KIH58590.1    KN716759    KJH41796.1    FN653053    CBY10183.1    ACPB03006481    EDW13484.2    GBYX01444792    JAO36628.1    KQ416708    KOF95609.1    GCES01164729    JAQ21593.1    KI660235    ETN76299.1    UYSU01036713    VDL98055.1    JARK01000389    EYC37453.1    EYC37454.1    DQ146416    AAZ75680.1    KPI94548.1    UZAO01078437    VDQ09963.1    JXLN01012619    KPM08691.1    UYRR01033424    VDK58736.1    JI169072    ADY43632.1    AYCK01010082    AYCK01010083    AYCK01010084    LSMT01000507    PFX16944.1    GDAI01000225    JAI17378.1    MH172491    QAA95898.1    FR916687    CDQ94049.1    AEMK02000017    KF669396    AIN44094.1    CM012445    RVE68758.1    RCN44479.1    HAEF01000612    SBR37994.1   

Proteomes

UP000053268    UP000053240    UP000218220    UP000007151    UP000245037    UP000235965    + More
UP000027135    UP000038042    UP000268014    UP000008743    UP000183832    UP000192223    UP000007819    UP000252519    UP000009192    UP000271162    UP000025227    UP000038043    UP000053766    UP000015103    UP000007303    UP000002852    UP000053454    UP000261640    UP000261480    UP000050788    UP000275846    UP000265000    UP000024635    UP000050795    UP000050792    UP000261500    UP000036680    UP000028760    UP000264820    UP000225706    UP000265200    UP000265180    UP000001038    UP000193380    UP000008227    UP000035681   

Pfam

PF00005   ABC_tran        + More
PF13304   AAA_21
PF01189   Methyltr_RsmB-F
PF17125   Methyltr_RsmF_N
PF13732   DUF4162
PF00088   Trefoil

Interpro

IPR017871   ABC_transporter_CS        + More
IPR003439   ABC_transporter-like       
IPR027417   P-loop_NTPase       
IPR003593   AAA+_ATPase       
IPR026082   ABCA       
IPR003959   ATPase_AAA_core       
IPR031341   Methyltr_RsmF_N       
IPR011023   Nop2p       
IPR001678   MeTrfase_RsmB/NOP2       
IPR029063   SAM-dependent_MTases       
IPR018314   Fmu/NOL1/Nop2p_CS       
IPR023273   RCMT_NOP2       
IPR023267   RCMT       
IPR020846   MFS_dom       
IPR025302   DUF4162       
IPR017994   P_trefoil_chordata       
IPR000519   P_trefoil_dom       

SUPFAM

SSF52540   SSF52540        + More
SSF53335   SSF53335       

CDD

cd06174  MFS
cd00111  Trefoil

ProteinModelPortal

A0A2W1BCS5   A0A194PTT1   A0A194R3K7   A0A2A4K545   A0A0F6PQM2   A0A212F3T3   + More
A0A2P8YJ86   A0A1B6EFI2   A0A1B6DK03   A0A1B6JS44   A0A1B6FQX5   A0A1B6FLT5   A0A1B6F8C5   A0A1B6MC35   A0A1B6G0W6   A0A1B6IZN0   A0A1B6MPR0   A0A2J7RIF1   A0A1B6CKN8   A0A2J7RIF3   A0A067QMM5   A0A1B6GZC0   A0A1B6HI75   A0A0N4XAZ4   A0A0D2WPE2   E4Y7D9   A0A1J1IJX5   A0A1W4WY30   A0A2G9V2A8   A0A0A7ARI5   E4XQ17   A0A2S2P9P8   A0A1B6GC71   A0A1Y3AWT5   A0A2S2QUV9   A0A1B6HGH5   J9K9B5   A0A1B6I525   A0A2R7W837   A0A0S7H6F6   A0A2H8TTL0   A0A0S7HAW5   A0A368GJA2   A0A0Q9XF97   A0A3P7C2C3   W6NGB2   A0A158QNT6   A0A0S7HA71   A0A0N4XMX0   A0A0C2GBZ7   A0A0D8XHI3   E4XHW7   T1IBQ4   H3C1X8   B4KIX1   H3D169   A0A0S7H654   A0A3B5PPH9   A0A3B5PRM2   A0A0L8I2K3   A0A146MPG2   M3ZRP8   A0A3Q3RQP1   A0A3B3YAD3   A0A3Q3LC94   W2T430   A0A3B3WRC0   A0A183T5C2   A0A3Q2Q6M2   A0A016WEL3   A0A016WC99   Q3YB24   A0A194PNI5   A0A183WPN0   A0A132ACH8   A0A183QDX2   A0A3P6R8D8   A0A3B3V8X0   A0A0M3K8V1   F1L0H8   A0A087XBS7   A0A3Q2YND9   A0A2B4RF03   A0A3P9HY39   A0A0K8TT98   A0A3P9L2H4   A0A3B3H814   A0A3B3I8Q3   A0A3P9L2N4   A0A3B3WR13   A0A3P9HY72   A0A3R5SPL4   A0A060YX36   A0A287AQ53   A0A161ALT0   A0A3S2MX29   A0A368GMG1   A0A1A8L276   A0A0K0E8W1  

PDB

5XJY     E-value=4.06554e-27,     Score=298

KEGG

101736702    K05643 ATP-binding cassette, subfamily A (ABC1), member 3 | (RefSeq) ATP-binding cassette sub-family

GO

GO:0016021   GO:0005524   GO:0042626   GO:0008757   GO:0003723   GO:0006364   GO:0016887   GO:0046836   GO:0051861   GO:0005737   GO:0006434   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR19229  

Length:

206

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.23852

Exp number, first 60 AAs:

0.00529

Total prob of N-in:

0.25561

outside

1  -  206

 

 

Pi

17.199091

Theta

21.028807

Tajima's D

-0.528113

CLR

11.238902

CSRT

0.237238138093095

Interpretation

Uncertain