Gene

KWMTBOMO11715  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004179

Annotation

PREDICTED:_RING_finger_and_CHY_zinc_finger_domain-containing_protein_1_[Papilio_polytes]

Location

Bomo_Chr19(+):12534284-12541168      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.458

CDS

ATGTCGAAGGAAAAGTCAGAAAGTGTAAACGGCGATAGTTCCACAGTTGCTGAACAAAACGGTGAAAAACGCATAGGCTGTGCTCATTACAAACGGCGAGCGAAGTTTGTGACTCCATGCTGTAACAAAGTGTACATCTGCCGTTACTGTCATGATGAAAACGAACAACACTATTTCAATAGGAAGACTGTTACAGAGCTGATATGCACCGAGTGCGACACAAGACAAAAGGTGCAGCCAGAATGCCAGAACTGTGGAGTTAGGTTTGGAAAGTACACTTGTTTGATCTGCAACCTGTTTGATGATGAAGATAAGAAACAGTATCACTGCGACGGATGCGGCATATGTCGTGTAGGAGGCCGCGATAGGTTCTTCCATTGTGAACGCTGCAACATGTGCCTGCCTGTTCAGCTGCAAAGGGTCGGACATAGGTGCGTAGAGAACGTGTCCCGTTCGAACTGCCCCGTGTGCCTGGAGGACATCCACACGTCCCGCATCCCGTGCCACATCCCGGACTGCGGCCACCTGCTGCACCGGCCCTGCTTCGAGCAGCTGCTGCACTCCGGCCACTACGCGTGCCCCACGTGCCAGACGAGCATGATCGACATGTCGAATCTCTGGAATTATCTGGATTCCGAAGTAGCGGCCACACCGATGCCGTCCGAATACGCCGACTACAAGGCCACGATACTGTGCAAGGATTGTCATAAGCTGTCAACGGTGAAGTTTCACGTCGTAGGACTGAAATGTCAACATTGCGGAGCCTACAACACGTGTCAGACGAACGGGTTCCATAAGGAGAGCGGGAGTACTGAATCGGGAGACGCGTCAAGTTCATCGTCGGCGTCGTCAGCGTCGTCAGCGCCGTCGCCCCGCGCTCCCCCGGCGCCGCACCACGACCTGCCCACCGCCAACCCGCTGGACGAGCCGCCCCAGGCCTGA

Protein

MSKEKSESVNGDSSTVAEQNGEKRIGCAHYKRRAKFVTPCCNKVYICRYCHDENEQHYFNRKTVTELICTECDTRQKVQPECQNCGVRFGKYTCLICNLFDDEDKKQYHCDGCGICRVGGRDRFFHCERCNMCLPVQLQRVGHRCVENVSRSNCPVCLEDIHTSRIPCHIPDCGHLLHRPCFEQLLHSGHYACPTCQTSMIDMSNLWNYLDSEVAATPMPSEYADYKATILCKDCHKLSTVKFHVVGLKCQHCGAYNTCQTNGFHKESGSTESGDASSSSSASSASSAPSPRAPPAPHHDLPTANPLDEPPQA

Uniprot

H9J3U0   A0A2W1BDV1   A0A2A4K552   A0A194QCJ7   A0A212FAE4   A0A343EU97   + More
A0A1E1W506   S4PI34   A0A2H1VU75   A0A182V0B2   A0A1S4H1C4   A0A182YDR3   A0A182HGI0   A0A182WW31   A0A1Q3F813   A0A1Q3F7Z8   A0A182MSI6   A0A1Q3F8L4   A0A1Q3F8L1   A0A182VUG1   A0A182RIQ0   A0A182KE56   A0A182MYX0   A0A182PE81   Q179F2   A0A2M4BMH7   A0A182QES7   A0A182F3J6   W5JC82   A0A2M3Z639   A0A2M4AHJ3   A0A2M3Z620   U5EI56   A0A1L8DJ14   A0A182IKD6   A0A084WH11   A0A1B0CN02   B0WFF8   A0A1Y1KZM1   A0A182L6C8   A0A0T6B3M0   A0A026WE11   A0A067QT89   A0A0N1ITU8   A0A2A3EPD4   V9IJ98   A0A088A0K6   A0A232F534   A0A0L7QX29   A0A154NZ53   D6WQ08   E2AU29   E2C4B9   A0A195BDK1   A0A158NFH8   A0A195CUN2   A0A151WP65   F4X179   A0A151JYW8   A0A1J1IM90   A0A182GU43   A0A0L0BNF2   B3MVM3   A0A1I8NEU8   A0A2J7PZK8   A0A0L7LCA8   A0A1B6EGW8   A0A3B0KVY1   A0A1W4VFS6   A0A1B6L5C0   Q29PE2   A0A1B6C7V5   B4LSA1   Q9VMD4   B3N5J7   A0A0M4EAN7   B4Q4N1   B4I1V9   B4P0D7   W8B5W5   Q058X2   B4KJD4   A0A1B6GNC4   A0A0A1WZ11   A0A0K8VXU1   A0A0K8USN5   A0A0K8VEW8   B4N7M3   K7J817   A0A0A1XIW4   A0A336LJE5   A0A0J7L4F0   A0A195DPG9   A0A1A9XLF0   A0A1A9WXB6   A0A1A9UYU6   A0A1B0BBS5  

Pubmed

19121390    28756777    26354079    22118469    23622113    12364791    + More
25244985    17510324    20920257    23761445    24438588    28004739    20966253    24508170    30249741    24845553    28648823    18362917    19820115    20798317    21347285    21719571    26483478    26108605    17994087    18057021    25315136    26227816    15632085    23185243    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    17550304    24495485    25830018    20075255   

EMBL

BABH01028802    KZ150130    PZC73068.1    NWSH01000149    PCG79048.1    KQ459185    + More
KPJ03192.1    AGBW02009493    OWR50693.1    KY827830    ASM62107.1    GDQN01008989    JAT82065.1    GAIX01005560    JAA87000.1    ODYU01004437    SOQ44306.1    AAAB01008984    APCN01004235    GFDL01011331    JAV23714.1    GFDL01011388    JAV23657.1    AXCM01001556    GFDL01011153    JAV23892.1    GFDL01011217    JAV23828.1    CH477353    EAT42854.1    GGFJ01005022    MBW54163.1    AXCN02000816    ADMH02001595    ETN61932.1    GGFM01003246    MBW23997.1    GGFK01006871    MBW40192.1    GGFM01003218    MBW23969.1    GANO01002763    JAB57108.1    GFDF01007652    JAV06432.1    ATLV01023778    KE525346    KFB49505.1    AJWK01019581    DS231917    EDS26195.1    GEZM01068628    JAV66853.1    LJIG01016019    KRT81857.1    KK107260    QOIP01000001    EZA54153.1    RLU27356.1    KK852981    KDR12931.1    KQ435732    KOX77378.1    KZ288201    PBC33560.1    JR047427    AEY60414.1    NNAY01000991    OXU25589.1    KQ414705    KOC63178.1    KQ434783    KZC04956.1    KQ971354    EFA06902.2    GL442767    EFN63072.1    GL452440    EFN77214.1    KQ976514    KYM82282.1    ADTU01014508    KQ977279    KYN04391.1    KQ982893    KYQ49593.1    GL888528    EGI59751.1    KQ981494    KYN40935.1    CVRI01000051    CRK99585.1    JXUM01088477    JXUM01088478    JXUM01088479    JXUM01088480    KQ563704    KXJ73471.1    JRES01001605    KNC21546.1    CH902624    EDV33288.1    KPU74386.1    NEVH01020333    PNF21766.1    JTDY01001743    KOB73020.1    GEDC01000157    JAS37141.1    OUUW01000022    SPP89551.1    GEBQ01027477    GEBQ01021283    GEBQ01017404    GEBQ01007078    JAT12500.1    JAT18694.1    JAT22573.1    JAT32899.1    CH379058    EAL34351.2    KRT03419.1    KRT03420.1    GEDC01027722    JAS09576.1    CH940649    EDW63709.1    AE014134    BT088896    AAF52385.2    ACS94568.1    AGB92669.1    CH954177    EDV59076.1    CP012523    ALC38322.1    CM000361    CM002910    EDX03958.1    KMY88519.1    CH480820    EDW54516.1    CM000157    EDW87895.1    KRJ97475.1    GAMC01012573    GAMC01012572    JAB93982.1    BT029096    ABJ17029.1    CH933807    EDW12509.2    GECZ01005848    JAS63921.1    GBXI01010547    JAD03745.1    GDHF01009204    GDHF01008613    JAI43110.1    JAI43701.1    GDHF01022615    GDHF01001177    JAI29699.1    JAI51137.1    GDHF01015229    GDHF01000891    JAI37085.1    JAI51423.1    CH964214    EDW80362.2    GBXI01003008    JAD11284.1    UFQS01000023    UFQT01000023    SSW97640.1    SSX18026.1    LBMM01000784    KMQ97506.1    KQ980662    KYN14707.1    JXJN01011619   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000075903    UP000076408    + More
UP000075840    UP000076407    UP000075883    UP000075920    UP000075900    UP000075881    UP000075884    UP000075885    UP000008820    UP000075886    UP000069272    UP000000673    UP000075880    UP000030765    UP000092461    UP000002320    UP000075882    UP000053097    UP000279307    UP000027135    UP000053105    UP000242457    UP000005203    UP000215335    UP000053825    UP000076502    UP000007266    UP000000311    UP000008237    UP000078540    UP000005205    UP000078542    UP000075809    UP000007755    UP000078541    UP000183832    UP000069940    UP000249989    UP000037069    UP000007801    UP000095301    UP000235965    UP000037510    UP000268350    UP000192221    UP000001819    UP000008792    UP000000803    UP000008711    UP000092553    UP000000304    UP000001292    UP000002282    UP000009192    UP000007798    UP000002358    UP000036403    UP000078492    UP000092443    UP000091820    UP000078200    UP000092460   

PRIDE

H9J3U0    Q9VMD4    Q058X2   

Pfam

PF14599   zinc_ribbon_6        + More
PF13639   zf-RING_2
PF05495   zf-CHY

Interpro

IPR037275   Znf_CTCHY_sf        + More
IPR037274   Znf_CHY_sf       
IPR013083   Znf_RING/FYVE/PHD       
IPR008913   Znf_CHY       
IPR001841   Znf_RING       
IPR039512   RCHY1_zinc-ribbon       
IPR017921   Znf_CTCHY       
IPR019786   Zinc_finger_PHD-type_CS       
IPR011031   Multihaem_cyt       

SUPFAM

SSF161219   SSF161219        + More
SSF161245   SSF161245       

Gene 3D

3.30.40.10    

ProteinModelPortal

H9J3U0   A0A2W1BDV1   A0A2A4K552   A0A194QCJ7   A0A212FAE4   A0A343EU97   + More
A0A1E1W506   S4PI34   A0A2H1VU75   A0A182V0B2   A0A1S4H1C4   A0A182YDR3   A0A182HGI0   A0A182WW31   A0A1Q3F813   A0A1Q3F7Z8   A0A182MSI6   A0A1Q3F8L4   A0A1Q3F8L1   A0A182VUG1   A0A182RIQ0   A0A182KE56   A0A182MYX0   A0A182PE81   Q179F2   A0A2M4BMH7   A0A182QES7   A0A182F3J6   W5JC82   A0A2M3Z639   A0A2M4AHJ3   A0A2M3Z620   U5EI56   A0A1L8DJ14   A0A182IKD6   A0A084WH11   A0A1B0CN02   B0WFF8   A0A1Y1KZM1   A0A182L6C8   A0A0T6B3M0   A0A026WE11   A0A067QT89   A0A0N1ITU8   A0A2A3EPD4   V9IJ98   A0A088A0K6   A0A232F534   A0A0L7QX29   A0A154NZ53   D6WQ08   E2AU29   E2C4B9   A0A195BDK1   A0A158NFH8   A0A195CUN2   A0A151WP65   F4X179   A0A151JYW8   A0A1J1IM90   A0A182GU43   A0A0L0BNF2   B3MVM3   A0A1I8NEU8   A0A2J7PZK8   A0A0L7LCA8   A0A1B6EGW8   A0A3B0KVY1   A0A1W4VFS6   A0A1B6L5C0   Q29PE2   A0A1B6C7V5   B4LSA1   Q9VMD4   B3N5J7   A0A0M4EAN7   B4Q4N1   B4I1V9   B4P0D7   W8B5W5   Q058X2   B4KJD4   A0A1B6GNC4   A0A0A1WZ11   A0A0K8VXU1   A0A0K8USN5   A0A0K8VEW8   B4N7M3   K7J817   A0A0A1XIW4   A0A336LJE5   A0A0J7L4F0   A0A195DPG9   A0A1A9XLF0   A0A1A9WXB6   A0A1A9UYU6   A0A1B0BBS5  

PDB

2DKT     E-value=1.37932e-25,     Score=287

KEGG

101743923    K10144 RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] | (RefSeq) RING fin

PATHWAY

04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)

GO

GO:0008270   GO:0000151   GO:0016567   GO:0004842   GO:0005515   GO:0005852   GO:0016021   GO:0042626   GO:0005737   GO:0006434   GO:0043564   GO:0006418   GO:0003824  

Length:

313

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04574

outside

1  -  313

 

 

Pi

19.550693

Theta

19.098729

Tajima's D

0.017694

CLR

0

CSRT

0.377931103444828

Interpretation

Uncertain