Gene

KWMTBOMO11712

Pre Gene Modal

BGIBMGA004170

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr19(-):12452995-12477163      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.369 Nuclear   Reliability : 1.832

CDS

ATGGAGTGGCTCCGAAAATATTACCACACAGTTTTCTACGATAGAGCGGATCAGAGGGTCAAAGATTGGCTGTTCATGACGTCACCATGGCCAATCGTGGCGATCCTAACGACTTATCTGCTGCTCATCAAGTTTATTCTGCCCATCTACATGAGGAACAAGAGACCTTACAGTTTGAAAGGCGTTATAAAAAGCTACAACGTGACTATGATTGTTTTCAACTTGGTCGTTGCTTGGGGGATAGCAACGTCAGGTTGGACAACCACATACCATTTCGGATGCGTTCTACCAGATTATACCACGAAACCGGAACCAATGAGGATGCTCACTTTCATGTGGTGGACATTGACTATCAAGATGACAGAGCTATTGGAGACCGTAATATTTTTGTTGAGAAAAAAAAATCAACAGGCCTCGTTCCTTCACGTGTACCATCACGTCATCTCTTTGGTTATGATATGGTGTGGTGTCAAATATATTGGAGGAGGAGACCAACGATTGGAAAGATATGGTGTGGGAATTCTTCTCACAAAGGAAATTTCCAAATCAGTCATAAATTTTGTTCCCCTCTCAAACCGGGCCATGTTGATTAAATTAGAAGCCAAACCATTTAACATCAACATTGTCCAAGTTTATGCGCCTACAGGGGATAAACCAATGGGCCAGATAGAGGACTTATATAGGGCTATTGATACCTTATTAAAATCTACTAAGAATCACGAGTTAGTTATCGTTATGGGTGACATGAATGCGAAGGTGGGTTCGACCATTACTCCTGGAGTGACTGGTGCTTATGGCCTTGGAAACAGAAACGATAGAGGTGATACGCTTATTGAGTTTTGCCAGGATAATAACCTCATAATTGCGAACACCTTCTTTAAGCTACCACCACGTCGGCTATACACATGGACATCACCAATGCACACAGTAGACCGCGTAGTCAGAAACCAAATTGACTATGTTATGATCAACAGAAGGTATAGAAATTGTATCAAGAAGGCGCAAACCTACCCCGGTGCAGACATTGGGTCAGATCATAACCCAGTGGTGGTAGACGTAGCATGCAAGCTGAAGAAGTTGCAGCCAAAGAGAATGGATGGAAGGCCAAACGTACGGAAGCTTGCTGAGCCCGACACACGAGCGAAGACCCACACCGCTATTAATCAATGGGCCAACGATCGTCGCACTGAAACCACTGCCTCTGACCTCGACACGTGGACTAGTCTAAAGCGAAGTGTAAAAGATATATGTCACCAATACCTCCAACCATCACAACTGGTCAAAAAACAAGATTGGATGACAGATTCAATTTTGCAGCTTATGGAAGACAGGAGGCAATTTAAGGGTACAAATCCAGTAATGTATAAGCAAATCGATGTCACCATTCGAAAAGAGATTGCGAAAGCCAAGAATGATTACTACAGCAATAAGTGCGCGCACTTGGAAGATCTCCTTCGTAAACATGACAGCTTCAATGCGCACAAGCACATCAAGGAAATGGTTGGTCATAGACGGAAATCAATGAATACTCTGACCGATGCAGGTGGGAACCTCATTCTTGACACCGATGGCAAAAAGAGAGTGTGGTGTGACTATGTTGCAGAGATGTTTGCGGACTCATCGAGGAACATTTCACCGATCACTGATCGGACTGGTCCAGCTATGTTGCGATCTGAGGTTTTGCGGGCCTTGAAAGCTGCTAAAACAGGCAATCTTCCTAGTGACTGGCTAAAATCCACATTCATCACGATACCCAAGAAGCAAAATGCCAAAAAATGTGGAGAGTATCGTATGATTAGTCTGATGAGCCATGTCCTAAAAGTATTCTTGAACATCATACAGAATAGAATACGGCCAAAATGTGATGAACAACTGGGCGATAGCCAATTTGGATTTCGATCTGGTGTTGGCACCAGAGAAGCTCTTTTTGCTCTCAACGTTCTCGTACAGAAATGCAGAGACATGCAAACTGATGTCTTTTTGTGCTTCATAGACTACGAAAAGGCATTTGACCGAGTTAAACATCATCAACTTTTTAGCCTTTTATGTGACATTGGTCTAGATGGTAAGGACGTCAGAATCATCCGCAACCTGTACGAGAAGCAGGTGGCTACGATAAGAGTCGAAAATGAGGAAACCGACCAAGTTGAGATCTGTCGTGGGGTCCGGCAGGGGTGTGTCTTATCCCCGTTGCTTTTTAACATCTACTCAGAGGCTGTGATGTCAAAAGCTCTTGAAAATCTTGAAGTGGGAATAGGAATCAACGGCAGGGTCGTTAACAACTTGCGTTATGCGGACGACACTATCCTTATTGCAGCATCGGAAGCCGATTTGCAAGCAATTGTGAATAAGGTTAATGAGTGCAGCGAAGAAGCCGGGTTGTCGATAAACATAAGCAAGACCAAGTTCATGGTAGTCTCAAGAAACCCGGATTTGAGTTCAAGCGTATCTGTAGCTGGGAAACAACTAGAGCGGGTACGACAGTACAAGTATTTAGGGGCTTGGGTAAACGAAGCATGGGAATCTGATCAAGAAATCAAGACCCGGATAGAAACTGCTCGAGCCTCTTTTAATAAAATGAGGAAAGTTCTTTGCTGTCGTCAACTGAATATAAAGCTCCGAGTCAGGCTACTCATGTGCTATATCTGGCCTATTGTCATGTATGGTTGCGAAACGTGGACCCTGAAAGAGGACACTACAAGACGCCTACAGGCATTCGAGATGTGGTGCTACCGTCGCATGTTACGCATTGGTTGGACGCAGAGGGTCAGGAACGAAACCGTGCTTCAGCGCGTTCATATGTCCCGGAAAATGCTGCCTGCTATCAAAAAGCGCAAGATAGAGTATCTCGGCCACGTGCTCAGGAACGATCGATACATGCTGCTCCAGCTGATAATTATGGGCAAAGTGGACGGAAAGAGACGTGCTGGGCGAAGAAAGAAATCATGGCTCCGGAATATCCGGGAGTGGACCGGTATTGCCTCCGTCGAACAGCTGTTCCGGCTGGCTGCAGATAAAAACGAATATAGAAAGCTAACGGCCAACCTTCAGGATTGA

Protein

MEWLRKYYHTVFYDRADQRVKDWLFMTSPWPIVAILTTYLLLIKFILPIYMRNKRPYSLKGVIKSYNVTMIVFNLVVAWGIATSGWTTTYHFGCVLPDYTTKPEPMRMLTFMWWTLTIKMTELLETVIFLLRKKNQQASFLHVYHHVISLVMIWCGVKYIGGGDQRLERYGVGILLTKEISKSVINFVPLSNRAMLIKLEAKPFNINIVQVYAPTGDKPMGQIEDLYRAIDTLLKSTKNHELVIVMGDMNAKVGSTITPGVTGAYGLGNRNDRGDTLIEFCQDNNLIIANTFFKLPPRRLYTWTSPMHTVDRVVRNQIDYVMINRRYRNCIKKAQTYPGADIGSDHNPVVVDVACKLKKLQPKRMDGRPNVRKLAEPDTRAKTHTAINQWANDRRTETTASDLDTWTSLKRSVKDICHQYLQPSQLVKKQDWMTDSILQLMEDRRQFKGTNPVMYKQIDVTIRKEIAKAKNDYYSNKCAHLEDLLRKHDSFNAHKHIKEMVGHRRKSMNTLTDAGGNLILDTDGKKRVWCDYVAEMFADSSRNISPITDRTGPAMLRSEVLRALKAAKTGNLPSDWLKSTFITIPKKQNAKKCGEYRMISLMSHVLKVFLNIIQNRIRPKCDEQLGDSQFGFRSGVGTREALFALNVLVQKCRDMQTDVFLCFIDYEKAFDRVKHHQLFSLLCDIGLDGKDVRIIRNLYEKQVATIRVENEETDQVEICRGVRQGCVLSPLLFNIYSEAVMSKALENLEVGIGINGRVVNNLRYADDTILIAASEADLQAIVNKVNECSEEAGLSINISKTKFMVVSRNPDLSSSVSVAGKQLERVRQYKYLGAWVNEAWESDQEIKTRIETARASFNKMRKVLCCRQLNIKLRVRLLMCYIWPIVMYGCETWTLKEDTTRRLQAFEMWCYRRMLRIGWTQRVRNETVLQRVHMSRKMLPAIKKRKIEYLGHVLRNDRYMLLQLIIMGKVDGKRRAGRRKKSWLRNIREWTGIASVEQLFRLAADKNEYRKLTANLQD

Uniprot

D5LB38   A0A2A4JBK9   A0A1W7RAL1   A0A2V9X8L4   A0A2S2PMS6   A0A076N1B6   + More
A0A3S3P648   A0A2J7RP47   A0A2J7Q6A8   A0A2J7Q5D5   A0A2J7QI56   A0A2J7PTY0   A0A2J7PW81   A0A2J7QR01   A0A2J7REE7   A0A2J7PMJ3   A0A2J7PQA3   A0A2J7RLI7   D7F162   A0A2J7QEJ0   A0A2J7Q6P7   A0A2J7QGT4   A0A2J7Q2Z3   A0A2J7RGX2   A0A2J7QKB0   A0A2J7Q0C6   A0A2J7QH51   A0A2J7QUN7   A0A2J7R4R4   A0A2J7QGJ2   A0A2J7PHM9   A0A2J7Q3T8   A0A2J7QGX8   A0A146LUY8   D7F163   A0A076N3Z4   A0A2A4JXP9   D7F168   D7F161   D5LB39   A0A2J7QCG2   A0A2J7QJJ9   A0A2J7PT27   A0A2J7QUD0   A0A2J7R8G1   A0A2J7RIL8   A0A2J7R8P5   A0A2J7R901   A0A2J7QMC5   A0A2J7PX03   W5MYT3   A0A2J7PBF1   A0A2J7PF68   A0A2J7RPX5   A0A2J7Q649   A0A2J7RBL1   A0A2J7QSZ5   A0A2J7PVW0   A0A2J7PNH4   A0A2J7PSH5   A0A2J7PC89   A0A2J7QNQ3   A0A2J7Q7C6   A0A2J7RRE4   A0A2J7RBL5   A0A2J7PZN7   W5NGM3   A0A2J7Q6T5   A0A2J7Q3K9   A0A2J7PFC5   A0A2W1BNH4   W4Z133   A0A2J7QLQ1  

Pubmed

20470440    26823975    28756777   

EMBL

GU815089    ADF18552.1    NWSH01001998    PCG69477.1    GFAH01000222    JAV48167.1    + More
QIAP01000240    PYX61602.1    GGMR01018096    MBY30715.1    KF881087    AIJ27486.1    NCKU01004395    RWS06003.1    NEVH01002141    PNF42599.1    NEVH01017534    PNF24114.1    NEVH01017570    PNF23798.1    NEVH01013959    PNF28275.1    NEVH01021219    PNF19787.1    NEVH01020937    PNF20581.1    NEVH01012082    PNF31006.1    NEVH01005277    PNF39212.1    NEVH01023985    PNF17546.1    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    NEVH01002684    PNF41704.1    FJ265547    ADI61815.1    NEVH01015309    PNF27009.1    NEVH01017460    PNF24248.1    NEVH01014359    PNF27789.1    NEVH01019075    PNF22955.1    NEVH01003750    PNF40091.1    NEVH01013275    PNF29009.1    NEVH01019971    PNF22037.1    NEVH01014358    PNF27914.1    NEVH01023960    NEVH01010501    PNF17732.1    PNF32290.1    NEVH01007402    PNF35815.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    NEVH01025135    PNF15828.1    NEVH01019064    PNF23230.1    PNF27813.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    FJ265548    ADI61816.1    KF881086    AIJ27485.1    NWSH01000469    PCG76200.1    FJ265553    ADI61821.1    FJ265546    ADI61814.1    GU815090    ADF18553.1    NEVH01016289    PNF26277.1    NEVH01013553    PNF28765.1    NEVH01021921    PNF19488.1    NEVH01011186    PNF32183.1    NEVH01016335    NEVH01006721    PNF25462.1    PNF37115.1    NEVH01003500    PNF40666.1    PNF37211.1    PNF37310.1    NEVH01013215    PNF29703.1    NEVH01020865    PNF20863.1    AHAT01017643    NEVH01027104    PNF13657.1    NEVH01026085    PNF14968.1    NEVH01020851    NEVH01013954    NEVH01006574    NEVH01001358    NEVH01001354    PNF21237.1    PNF28332.1    PNF37782.1    PNF42792.1    PNF42884.1    NEVH01017540    PNF24056.1    NEVH01005896    PNF38208.1    NEVH01011205    PNF31711.1    NEVH01020940    PNF20478.1    NEVH01023953    PNF17877.1    NEVH01021931    PNF19256.1    NEVH01027067    PNF13944.1    NEVH01012564    PNF30212.1    NEVH01017443    PNF24485.1    NEVH01000609    PNF43402.1    PNF38212.1    NEVH01020333    PNF21790.1    AHAT01008485    NEVH01017452    PNF24293.1    NEVH01019066    PNF23173.1    NEVH01025668    PNF15041.1    KZ150025    PZC74827.1    AAGJ04171899    NEVH01013243    PNF29503.1   

Proteomes

UP000218220    UP000247801    UP000285301    UP000235965    UP000018468    UP000007110    + More

PRIDE

D5LB38    D7F162    D7F163    D7F168    D7F161    D5LB39    + More

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR002138   Pept_C14_p10       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB38   A0A2A4JBK9   A0A1W7RAL1   A0A2V9X8L4   A0A2S2PMS6   A0A076N1B6   + More
A0A3S3P648   A0A2J7RP47   A0A2J7Q6A8   A0A2J7Q5D5   A0A2J7QI56   A0A2J7PTY0   A0A2J7PW81   A0A2J7QR01   A0A2J7REE7   A0A2J7PMJ3   A0A2J7PQA3   A0A2J7RLI7   D7F162   A0A2J7QEJ0   A0A2J7Q6P7   A0A2J7QGT4   A0A2J7Q2Z3   A0A2J7RGX2   A0A2J7QKB0   A0A2J7Q0C6   A0A2J7QH51   A0A2J7QUN7   A0A2J7R4R4   A0A2J7QGJ2   A0A2J7PHM9   A0A2J7Q3T8   A0A2J7QGX8   A0A146LUY8   D7F163   A0A076N3Z4   A0A2A4JXP9   D7F168   D7F161   D5LB39   A0A2J7QCG2   A0A2J7QJJ9   A0A2J7PT27   A0A2J7QUD0   A0A2J7R8G1   A0A2J7RIL8   A0A2J7R8P5   A0A2J7R901   A0A2J7QMC5   A0A2J7PX03   W5MYT3   A0A2J7PBF1   A0A2J7PF68   A0A2J7RPX5   A0A2J7Q649   A0A2J7RBL1   A0A2J7QSZ5   A0A2J7PVW0   A0A2J7PNH4   A0A2J7PSH5   A0A2J7PC89   A0A2J7QNQ3   A0A2J7Q7C6   A0A2J7RRE4   A0A2J7RBL5   A0A2J7PZN7   W5NGM3   A0A2J7Q6T5   A0A2J7Q3K9   A0A2J7PFC5   A0A2W1BNH4   W4Z133   A0A2J7QLQ1  

PDB

5HHL     E-value=4.11769e-12,     Score=176

KEGG

105841346    K10250 elongation of very long chain fatty acids protein 7 [EC:2.3.1.199] | (RefSeq) elongation of v

PATHWAY

00062    Fatty acid elongation - Bombyx mori (domestic silkworm)
01040    Biosynthesis of unsaturated fatty acids - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01212    Fatty acid metabolism - Bombyx mori (domestic silkworm)

GO

GO:0003964   GO:0004519   GO:0006355   GO:0004197   GO:0016021   GO:0005737   GO:0005852   GO:0042626   GO:0006434   GO:0043564   GO:0006418   GO:0003824  

Length:

1018

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

87.4000500000001

Exp number, first 60 AAs:

21.88899

Total prob of N-in:

0.00073

POSSIBLE N-term signal

sequence

outside

1  -  28

TMhelix

29  -  51

inside

52  -  71

TMhelix

72  -  94

outside

95  -  108

TMhelix

109  -  131

inside

132  -  137

TMhelix

138  -  160

outside

161  -  1018

 

 

Pi

25.070393

Theta

27.248279

Tajima's D

-0.62575

CLR

0.656864

CSRT

0.222388880555972

Interpretation

Uncertain