Silkworm Genome Informatics Database

Gene

KWMTBOMO11708

Pre Gene Modal

BGIBMGA009638

Annotation

PREDICTED:_uncharacterized_protein_LOC106714598_[Papilio_machaon]

Location

Bomo_Chr19(-):12268704-12273148 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.724

CDS

ATGTCTTATTTGGGAAATTTACCAATTTACGATCATAAAACATGTGAATGGTCTATTTTCAAGAGTCGTTTAACACAGTTTTTAAAAGTAAATGACGTATCGGAAGAAAAGAAAAGTGCTATCCTCATTACGCACCTCTCCGATGAGGCGTACCGTCTAGTGCGAAATTTAGCATACCCCAAAGATGCTGATTCATTTTCGTATGTGGAGCTGGTTTCATTACTCGATAATCATTTTAAGCCAAAGAAGTGTTCATATACCGACAAGGCTCGTTTTTATGGGGCTACGAGAACCCCAGGCGAATCATTAGGAGACTGGGCGGCGCGACTTAGGGGGTTGGCAAGTTATTGCGAATTCGGCGCGGCTTTGGAAACGAACCTTACGGATCGTTTTGTCCTAGGCCTGGGCTCAGGTCCAGCACGAGATAAGCTGTACGAGCAGGACCCATCAAAAATGAAAATCGATCGAGCGTTAGAAATAGCCCAGCAGGCAGAGAGTGCGAGGGAGGCTAAGTTCATGGAAGTTAGTGTTAAGGAAGAACCTGTGTACCGTGCCTCCTTCACGCTCGACGATAGACGTGAAGCTAATCGACGAGCGCGGACGAGTGAGCCAAGCAGTGGTTATTCAGGGCAGCGGCAGCGGTCCCACCTTGGTGATGGTCAATCAGTTCGCGGGCAGCAACCACGTCGTGACTTCCCAAGGTGCTCGGTTTGCGGGTTAAGAAACCACGACGAAGAGAAGTGCCGTTACAAGGGCTATCGCTGTCAGAAGTGCGGTGAAAAGGGACATTTAAAAAAAGTGTGTGACAAAAATGTGCAGATCAATAATATTTGTGATGACCACGATAAAGGTGTCGGCCACATTCCGGATCCTGACCTTTGTGAGGAATGTCATAATTATAGTTTAAAGCATATCGATCAGATTCTTAGAAGTAAGGAAGATTTTGAAAAAAAGAGTTGTATTACTAGTACGTCGCCTCCATTTTCCAACACAACAATTTTAGCAAAACCTAACATAACCAATTATAGCGATGGTTCGATTATGACTTCTGTAGCTCAACAGGCTGTGGGAATGGAAAGTGGAGACGGACGTAACGAGCAAGAAAATGTAGTAACCGATATTGGTGATATTGTCCAGCCAACTGACGAGATCTGGGGTGATTGCGAAGAAGTTGACCTTGAACGGGAGAACCTAGTTCCTGGCAGTTCAGCCGAGCCTCCGGCGCCGCCGCTGGCGTTGTCGTCACCAGTCGCGTCTAAACGTACCTCACCTGTTTCTGATCCACATCAGCCCGGACCCTCGTCCTTAACTTATTCCCCACCGCTCACACGTCGCAAGAAGAGAGTTGATTACAAGCAATTCTATTATTGA

Protein

MSYLGNLPIYDHKTCEWSIFKSRLTQFLKVNDVSEEKKSAILITHLSDEAYRLVRNLAYPKDADSFSYVELVSLLDNHFKPKKCSYTDKARFYGATRTPGESLGDWAARLRGLASYCEFGAALETNLTDRFVLGLGSGPARDKLYEQDPSKMKIDRALEIAQQAESAREAKFMEVSVKEEPVYRASFTLDDRREANRRARTSEPSSGYSGQRQRSHLGDGQSVRGQQPRRDFPRCSVCGLRNHDEEKCRYKGYRCQKCGEKGHLKKVCDKNVQINNICDDHDKGVGHIPDPDLCEECHNYSLKHIDQILRSKEDFEKKSCITSTSPPFSNTTILAKPNITNYSDGSIMTSVAQQAVGMESGDGRNEQENVVTDIGDIVQPTDEIWGDCEEVDLERENLVPGSSAEPPAPPLALSSPVASKRTSPVSDPHQPGPSSLTYSPPLTRRKKRVDYKQFYY

Uniprot

A0A1Y1LR51 A0A146M835 A0A2A4K2Y4 A0A1W7R5Y0

Pubmed

28004739 26823975

EMBL

GEZM01050895 JAV75318.1 GDHC01002706 JAQ15923.1 NWSH01000218 PCG78288.1 + More
GEHC01001077 JAV46568.1

Proteomes

UP000218220

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF00078   RVT_1
PF17917   RT_RNaseH

Interpro

IPR012337   RNaseH-like_sf        + More
IPR036875   Znf_CCHC_sf
IPR001584   Integrase_cat-core
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR041373   RT_RNaseH
IPR000477   RT_dom
IPR021109   Peptidase_aspartic_dom_sf
IPR001878   Znf_CCHC

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756
SSF50630   SSF50630

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A1Y1LR51 A0A146M835 A0A2A4K2Y4 A0A1W7R5Y0

KEGG

101735635 no KO assigned | (RefSeq) receptor-like protein kinase BRI1-like 3

GO

GO:0015074 GO:0008270 GO:0003676 GO:0006810 GO:0016021 GO:0042626 GO:0005737 GO:0006434 GO:0043564 GO:0006418 GO:0003824

Length:

456

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00154

outside

1 - 456

Pi

19.99917

Theta

21.225908

Tajima's D

-1.06822

CLR

4.287969

CSRT

0.124693765311734

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree