SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11702
Annotation
PREDICTED:_uncharacterized_protein_LOC105842184_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.918
 

Sequence

CDS
ATGGATGATTTAAAGTTATATGCCAACAATAAGAACAGCCTCAAAGTTTTACTTGATAGCACAGAGATTTTTACTAGAGACATAGGAATGGAATTTGGCTTAAATAAATGCAATGTGCTTCATTTAACATCTGGAAGGAGAGCTGAGCACCAGAGCGAAGGTCACATACTGTTGAGTGGCTTAAACTTCGAACATTTGAAGGAAGACGAAAATTATAAATACTTAGGTATAGATGAAGCAGGCAAAATAGATCATAAAAGAATTCAGGATCAGGTGAAAAGAGAGTACTTCAAAAGAGTAAAATGCATCACTAACACACAACTTAGCGCGAGAAACCTCATAACGGCCATCAACACTTATGCCACACCAGTTCTTTTATACACGTTTGGAATAATAAACTACAAAAATAGTGACTTAAACAAAATAGATATAAAGACAAGGAAGATACTCACTTTGAATAAAGCCCAACAACAAAAAGCGGATATCGAAAGACTCTATTTACCCATAGAAGAAGGAGGCAGAGGACTTATAAATATAGAAATGTTACACAAAACTCAGATTATTAAATTTAGGCAATATTTAAACAATGAACAGGACCAAATCATAAAAGCAATAGTTAAACACGATAAACATAGAGATAAACATTCAATACACAAAGATGGTAAAAATAATGCAGTAAGAATAGAATTAACAGAAAACAGAAACTACACCGATACTGAAATTAAGAAAGCAGTAATAAAGACTGGCATCAGTAAATGGAAAGAGAAACCGCTACATGGACAATTCCGTTGGTCCGTTATAGAGAAGGGTAATATAGATCGAGAGTATTCGTTCCGCTGGCTTAAGAAACAAATCGTGTCCCCCACGTTAGAATCTTCGGTATTCGCTATACAAGATCAGGCAGTAATTACGAGACAAATAGAAAGAGATATTCTAAAGAAATCTGTCGATGGTAAGTGTCGCCTATGCCTAGCAAAAGACGAGTCCATAGAGCATATAATCTCGGGATGTGAAAAACTGGCCGGCACTTACTATGTGAACAGACATAACAACATAGTAAAGTATATTTGGTGGGCAATAGGAAGAAAACACAATTTTGAATTAGACTCGCTATGGTGGAAGGTGAATTTGACTCAACCTCAGATAAAAGAAAACAGCTCCGCGAAGCTAATGTGGGAGATACCAGTGCAGACGGACGTTACAATAAAGCACAATAGACCAGACATAATATACATAGACAAGACAGAAAATAAAACCTACTTAATAGATATAACTGTACCATCTGACTACAATATAGGACCAAAAGAACTGGAAAAACTTAGTAAATATCACCCCTTAAAAGTAGAACTAACACGACTCTGGAATACACACACAGAAACCATCCCCATAGTAATAGGCGCAACGGGCGTGGTGGCAAAAAGTATACATAGATACATAGACAAACTGGAGGCAAATATAAACATACACATAATACAAAAACAAGCAGCCATACACACATGCACAATAATAAGTAAAGTTTTGGGTAATACAGTTTTCATAAATTCAAGGGAGTCCGAACCTCCTCTTCCCTGA
Protein
MDDLKLYANNKNSLKVLLDSTEIFTRDIGMEFGLNKCNVLHLTSGRRAEHQSEGHILLSGLNFEHLKEDENYKYLGIDEAGKIDHKRIQDQVKREYFKRVKCITNTQLSARNLITAINTYATPVLLYTFGIINYKNSDLNKIDIKTRKILTLNKAQQQKADIERLYLPIEEGGRGLINIEMLHKTQIIKFRQYLNNEQDQIIKAIVKHDKHRDKHSIHKDGKNNAVRIELTENRNYTDTEIKKAVIKTGISKWKEKPLHGQFRWSVIEKGNIDREYSFRWLKKQIVSPTLESSVFAIQDQAVITRQIERDILKKSVDGKCRLCLAKDESIEHIISGCEKLAGTYYVNRHNNIVKYIWWAIGRKHNFELDSLWWKVNLTQPQIKENSSAKLMWEIPVQTDVTIKHNRPDIIYIDKTENKTYLIDITVPSDYNIGPKELEKLSKYHPLKVELTRLWNTHTETIPIVIGATGVVAKSIHRYIDKLEANINIHIIQKQAAIHTCTIISKVLGNTVFINSRESEPPLP

Summary

Pfam
PF00078   RVT_1
Interpro
IPR000477   RT_dom        + More
IPR001611   Leu-rich_rpt       
IPR012337   RNaseH-like_sf       
SUPFAM
SSF53098   SSF53098       

Ontologies

Topology

Length:
523
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
8.62785000000001
Exp number, first 60 AAs:
0.00123
Total prob of N-in:
0.38427
outside
1  -  523
 
 

Population Genetic Test Statistics

Pi
6.865318
Theta
5.90465
Tajima's D
-1.071784
CLR
2.709507
CSRT
0.124443777811109
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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