Gene

KWMTBOMO11700

Pre Gene Modal

BGIBMGA003965

Annotation

PREDICTED:_hemicentin-2-like_[Bombyx_mori]

Location

Bomo_Chr19(-):11740250-11763858      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.042 PlasmaMembrane   Reliability : 1.579

CDS

ATGCACTTAACGGAGTGCGATTTAACGTTCTCTTTCAATTGGTTCCAGATGAAATGGAAACGTACAGGCGGAATGGGAATACAGCTAGCTGCAGCAGTGTTCTGGATGCTGCCTTTGATCACGTCTTCAACGGGAGATATAAGGCACCACGGAGCGTCGAGGGCAAGGGGTTGGCGTGCAGGGACCCAGCAGACTGTTGAAACGGCCGCCAATAACTCGGTCAGCAACATCACTGCACAACTAGGCGGAACCGCCTACCTCCACTGTCTAGTTGGGCATCTCAGCGAGAGAGGGCAAGTCTCCTGGATCAGGAAACGTGACTGGCACATTTTGAGCTCCGGGAAATTTACTTACACGAACGACGAGAGATTTCAGGTATTACACGGCGAAGGTTCTGAAGATTGGACTCTGCAGATTAAGTTTGTTCAAAAGAGAGACAACGGTACTTACGAGTGTCAGGTGTCAACAAGAACTGGGATAGTGTCGCATTACGTACGTCTCCAGATAGTGGTTCCGGAGGCCTTCATTCTTGGCTCCGGAGAACACCACGTCGATCTGGGCAGCGTCATCCACCTCATATGTATCGTGGAGAAGAGTCCAACACCCCCGCAATACGTCTTCTGGTACCACAATGACAGGATGATAAACTATGATGCTACAAGAGGAGGGATCACAGTGGAGACCGAGCCCGGCGCCCGTACCCAATCCAGACTCACAGTCAGAGGCGCAACACTCAAAGATTCCGGGAATTACACATGCAGCGCTAGTAACACTGAGCCTGCTTCTATACACGTTTTCGTCTCGGAAGGAAGTAACAAAATGGCGGCGATACTTCGGCGCAACACGAGCGCGATCCACGGGATCACCACTAGCGCCACCTGTCTGCTCCTTCTGGGCACAGCGCTCATGCACTATGGTTTGCGATGA

Protein

MHLTECDLTFSFNWFQMKWKRTGGMGIQLAAAVFWMLPLITSSTGDIRHHGASRARGWRAGTQQTVETAANNSVSNITAQLGGTAYLHCLVGHLSERGQVSWIRKRDWHILSSGKFTYTNDERFQVLHGEGSEDWTLQIKFVQKRDNGTYECQVSTRTGIVSHYVRLQIVVPEAFILGSGEHHVDLGSVIHLICIVEKSPTPPQYVFWYHNDRMINYDATRGGITVETEPGARTQSRLTVRGATLKDSGNYTCSASNTEPASIHVFVSEGSNKMAAILRRNTSAIHGITTSATCLLLLGTALMHYGLR

Uniprot

A0A3S2NFI6   A0A194QE31   A0A212FNL4   A0A2A4JJL4   A0A0L7L3H1   A0A1B6M5C2   + More
A0A0C9QGT5   A0A158NDS5   K7J5J1   A0A3L8E1U2   A0A067QY67   A0A088ATH3   A0A0L7R892   F4W811   A0A195EY83   A0A195BQJ6   A0A146KVD1   A0A0A9WHQ0   A0A154PAT5   A0A1Y1KG40   A0A0N0U7W7   A0A2W1C1H9   A0A212FHY4   B4II15   A0A2Y9D2C3   B4NYX1   B3N3H9   A0A0J9R642   A0A0J9TU05   A0A0B4KED6   A0A0P9C121   A0A0Q9X7A2   B4MDZ1   A0A1W4W4S0   A0A1W4VSQ1   A0A0Q9W018   A0A1I8MQG3   A0A1I8QCQ8   A0A0R1DN06   A0A0Q5WCF0   A0A0M4EHL1   A0A0R1DNB1   A0A0P8ZS53   B5DZ10   A0A0J9R7J7   A1Z6H9   A0A0J9R6D3   E3CTN6   A0A0Q9W020   A0A1W4W5B7   A0A1W4VSJ7   A0A0Q9X729   A0A0Q9WCB0   B4KSB9   A0A1B0AC53   A0A1I8QCP5   A0A3B0J6W5   A0A1I8QCM5   A0A1B0G748   A0A1I8QCP4   A0A1I8MQG4   A0A1I8QCU7   A0A1A9V5D0   A0A1B0CLM6   A0A1B6L536   A0A1B6CMM9   A0A194PM23  

Pubmed

26354079    22118469    26227816    21347285    20075255    30249741    + More
24845553    21719571    26823975    25401762    28004739    28756777    17994087    12364791    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25315136    15632085    26109357    26109356   

EMBL

RSAL01000136    RVE46214.1    KQ459185    KPJ03205.1    AGBW02005277    OWR55299.1    + More
NWSH01001235    PCG72019.1    JTDY01003273    KOB69829.1    GEBQ01008874    GEBQ01007244    JAT31103.1    JAT32733.1    GBYB01013793    JAG83560.1    ADTU01012914    ADTU01012915    ADTU01012916    ADTU01012917    ADTU01012918    ADTU01012919    ADTU01012920    ADTU01012921    ADTU01012922    ADTU01012923    QOIP01000002    RLU26159.1    KK852824    KDR15426.1    KQ414637    KOC66976.1    GL887888    EGI69681.1    KQ981906    KYN33245.1    KQ976424    KYM88408.1    GDHC01018780    JAP99848.1    GBHO01035642    GBHO01031866    GDHC01008910    JAG07962.1    JAG11738.1    JAQ09719.1    KQ434849    KZC08494.1    GEZM01086326    GEZM01086325    GEZM01086323    JAV59548.1    KQ435694    KOX80921.1    KZ149915    PZC77963.1    AGBW02008458    OWR53326.1    CH480841    EDW49541.1    AAAB01008960    CM000157    EDW89822.2    CH954177    EDV59861.2    CM002911    KMY91662.1    KMY91665.1    AE013599    AGB93251.1    CH902619    KPU77310.1    CH933808    KRG04108.1    CH940662    EDW58756.1    KRF78457.1    KRJ98731.1    KQS71043.1    CP012524    ALC40430.1    KRJ98732.1    KPU77311.1    CM000071    EDY69227.3    KMY91664.1    BT029948    AAF57304.3    ABM92822.1    KMY91663.1    BT125702    ADO33193.1    KRF78458.1    KRG04107.1    KRF78459.1    EDW08401.2    OUUW01000001    SPP75823.1    CCAG010003785    AJWK01017457    GEBQ01021373    JAT18604.1    GEDC01022653    JAS14645.1    KQ459598    KPI94486.1   

Proteomes

UP000283053    UP000053268    UP000007151    UP000218220    UP000037510    UP000005205    + More
UP000002358    UP000279307    UP000027135    UP000005203    UP000053825    UP000007755    UP000078541    UP000078540    UP000076502    UP000053105    UP000001292    UP000002282    UP000008711    UP000000803    UP000007801    UP000009192    UP000008792    UP000192221    UP000095301    UP000095300    UP000092553    UP000001819    UP000092445    UP000268350    UP000092444    UP000078200    UP000092461   

PRIDE

A1Z6H9   

Pfam

PF07679   I-set        + More
PF07686   V-set

Interpro

IPR037448   Zig-8        + More
IPR013098   Ig_I-set       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
IPR013106   Ig_V-set       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10    

ProteinModelPortal

A0A3S2NFI6   A0A194QE31   A0A212FNL4   A0A2A4JJL4   A0A0L7L3H1   A0A1B6M5C2   + More
A0A0C9QGT5   A0A158NDS5   K7J5J1   A0A3L8E1U2   A0A067QY67   A0A088ATH3   A0A0L7R892   F4W811   A0A195EY83   A0A195BQJ6   A0A146KVD1   A0A0A9WHQ0   A0A154PAT5   A0A1Y1KG40   A0A0N0U7W7   A0A2W1C1H9   A0A212FHY4   B4II15   A0A2Y9D2C3   B4NYX1   B3N3H9   A0A0J9R642   A0A0J9TU05   A0A0B4KED6   A0A0P9C121   A0A0Q9X7A2   B4MDZ1   A0A1W4W4S0   A0A1W4VSQ1   A0A0Q9W018   A0A1I8MQG3   A0A1I8QCQ8   A0A0R1DN06   A0A0Q5WCF0   A0A0M4EHL1   A0A0R1DNB1   A0A0P8ZS53   B5DZ10   A0A0J9R7J7   A1Z6H9   A0A0J9R6D3   E3CTN6   A0A0Q9W020   A0A1W4W5B7   A0A1W4VSJ7   A0A0Q9X729   A0A0Q9WCB0   B4KSB9   A0A1B0AC53   A0A1I8QCP5   A0A3B0J6W5   A0A1I8QCM5   A0A1B0G748   A0A1I8QCP4   A0A1I8MQG4   A0A1I8QCU7   A0A1A9V5D0   A0A1B0CLM6   A0A1B6L536   A0A1B6CMM9   A0A194PM23  

PDB

6EG0     E-value=2.11639e-46,     Score=467

KEGG

101739906    no KO assigned | (RefSeq) hemicentin-2-like

GO

GO:0016021   GO:0050808   GO:0008039   GO:0007606   GO:0005515   GO:0016887   GO:0006810   GO:0042626   GO:0005737   GO:0006434   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR23279  

Length:

308

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

40.21269

Exp number, first 60 AAs:

18.06503

Total prob of N-in:

0.14810

POSSIBLE N-term signal

sequence

outside

1  -  21

TMhelix

22  -  44

inside

45  -  282

TMhelix

283  -  305

outside

306  -  308

 

 

Pi

25.309885

Theta

22.930058

Tajima's D

0.32358

CLR

1.463165

CSRT

0.463926803659817

Interpretation

Uncertain