Gene

KWMTBOMO11698  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004142

Annotation

PREDICTED:_ATP-binding_cassette_sub-family_B_member_8?_mitochondrial-like?_partial_[Plutella_xylostella]

Location

Bomo_Chr19(+):11723409-11728853      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.364

CDS

ATGTGGTATATGTTACAGAATCACTTATTTTGTCTCACAAGACAAAGGTTCCTGGCTTCAAAAAGTAATAAATACTTCACTAATATAGTAAAAAACAAGCCATCAGACGCTTTAAATCGATATATATCACAGTTAAAGACTCGTGGAAAAAGTTCAAAGTCTGGAGAATCATTGCCTTGCAGTCCATGGAAATTGTGTACAGGAGTTAGTTTAGCTATTGGCGCTCGGTATTTTCTATATAGGAGTCCAGTATTTTGTAAAGCAGTTCAGACTTCGAGAGTAATACAGAGAAGGCCGAATTTCCAAGAGGATACCGCTAAATTTGATTGGGAAAAATTATTGAACTATTTAAAACCTCATAAATGGCTCCTTATAGCTGCTGTTGGTTCTGCGTTAGCTGTGGCATTCCTAAATGTGTACATCCCAGCTATGCTCGGTGTCATCGTGAATGTTCTAGCAGGAATAAGGAATAATCCGGCTGCTGATTTCATTGACGAGATCAAGATGCCGGCATTTAAATTGATTTCATTGTATGTTGGACAGGCAGCTTTTACGTTTTTCTACATTCACTTGCTGTCACAAGTGGGAGAAAAAGTGGCCACTCAAATGAAACAAGATCTATTTGTATCTATTCTAAGACAGGATATAGAATTTTTTGATAAAGAAAGAACTGGGGAATTAGTTAATAGGTTAACAGTGGACGTACAAGACTTCAAAAGCTCTTTCAAACAGACCATATCGGGAGGTCTTAGAGCTATTACGCAGGTGGTGGGTTCTGCGTTGTTATCGGAGGCACCTTCATTGGTTCGCTGTTGA

Protein

MWYMLQNHLFCLTRQRFLASKSNKYFTNIVKNKPSDALNRYISQLKTRGKSSKSGESLPCSPWKLCTGVSLAIGARYFLYRSPVFCKAVQTSRVIQRRPNFQEDTAKFDWEKLLNYLKPHKWLLIAAVGSALAVAFLNVYIPAMLGVIVNVLAGIRNNPAADFIDEIKMPAFKLISLYVGQAAFTFFYIHLLSQVGEKVATQMKQDLFVSILRQDIEFFDKERTGELVNRLTVDVQDFKSSFKQTISGGLRAITQVVGSALLSEAPSLVRC

Uniprot

A0A2H1VPU5   A0A2A4IWJ2   A0A2H1VIQ3   A0A3S2NW93   A0A2H4KAW5   A0A212FNN3   + More
A0A194QYA3   A0A194QIC9   A0A0P4ZX17   A0A0P5E543   A0A0P5U6Y3   A0A0P5ZV27   A0A0P5TDA1   A0A0P5JL62   A0A0P5S0L7   A0A0N8C578   A0A0N8E4R5   A0A0P5V9Y6   A0A0P5PYE4   A0A0N7ZU64   A0A0P5ZW23   A0A0P6GLK6   A0A0P5DXX1   A0A0P4XS94   A0A0P4ZWB9   A0A0P6G9S4   A0A0P5YPA6   A0A0P6GI06   A0A0P5TF32   A0A0T6B5Z7   A0A0P6I9H4   A0A0N8A1N3   A0A0P5V6Z7   A0A0N8E5S6   A0A2J7PBH4   A0A067RAL4   T1PE36   A0A2J7PBG0   A0A1I8NEI4   Q17I35   A0A0L0BQU8   W8AYD4   A0A0A1XEY9   A0A1Y1LRP3   A0A1Y1LT88   A0A034VH39   A0A2H4TEP5   B4JNJ4   A0A1I8PBT0   B4GU29   Q29J72   A0A084WKF5   A0A0P5ZJ47   A0A2P8YZ46   E9GHP1   B4L6K4   A0A182GAI1   A0A0Q9XF01   A0A0K8VQ28   Q9VYL5   A0A182F9U1   A0A0K8TXX5   W5JVP9   Q7Q5Q2   B3MRZ4   A0A182TV50   B4R3Y6   A0A182X8Q5   A0A182I122   A0A154PP01   A0A182LLE1   B3NXB4   A0A182ULQ3   A0A1S3KF87   A0A1Q3F9U7   B0WV49   A0A158V4T9   A0A336LPL2   A0A182J1F7   A0A182S9W1   A0A182NJ88   A0A182QCH4  

Pubmed

22118469    26354079    24845553    25315136    17510324    26108605    + More
24495485    25830018    28004739    25348373    29121518    17994087    15632085    24438588    29403074    21292972    26483478    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20920257    23761445    12364791    14747013    17210077    20966253   

EMBL

ODYU01003453    SOQ42254.1    NWSH01005627    PCG64091.1    ODYU01002790    SOQ40720.1    + More
RSAL01000136    RVE46215.1    KY484776    ASS36018.1    AGBW02005277    OWR55300.1    KQ460949    KPJ10447.1    KQ459185    KPJ03206.1    GDIP01211222    JAJ12180.1    GDIP01151428    JAJ71974.1    GDIP01134189    JAL69525.1    GDIP01039397    JAM64318.1    GDIP01131691    JAL72023.1    GDIQ01201566    JAK50159.1    GDIQ01100649    JAL51077.1    GDIQ01113635    JAL38091.1    GDIQ01061948    JAN32789.1    GDIP01102430    JAM01285.1    GDIQ01121711    JAL30015.1    GDIP01212225    JAJ11177.1    GDIP01078783    GDIP01038237    JAM65478.1    GDIQ01171845    GDIQ01073149    GDIQ01031861    JAN62876.1    GDIP01150134    JAJ73268.1    GDIP01238778    LRGB01002580    JAI84623.1    KZS06982.1    GDIP01220622    JAJ02780.1    GDIQ01036568    JAN58169.1    GDIP01055045    JAM48670.1    GDIQ01052802    JAN41935.1    GDIP01132984    JAL70730.1    LJIG01009566    KRT82824.1    GDIQ01007723    JAN87014.1    GDIP01191273    JAJ32129.1    GDIP01119433    JAL84281.1    GDIQ01059060    GDIQ01056415    JAN35677.1    NEVH01027097    PNF13672.1    KK852581    KDR20884.1    KA646405    AFP61034.1    PNF13673.1    CH477243    EAT46324.1    JRES01001496    KNC22455.1    GAMC01015424    GAMC01015423    JAB91132.1    GBXI01005239    JAD09053.1    GEZM01050589    JAV75508.1    GEZM01050588    JAV75510.1    GAKP01017862    JAC41090.1    KY849626    ATY74510.1    CH916371    EDV92287.1    CH479191    EDW26112.1    CH379063    EAL32430.2    ATLV01024118    KE525349    KFB50699.1    GDIP01056484    JAM47231.1    PYGN01000276    PSN49512.1    GL732545    EFX81018.1    CH933812    EDW06000.1    JXUM01051212    KQ561679    KXJ77820.1    KRG07115.1    GDHF01011366    JAI40948.1    AE014298    AY118801    AAF48177.1    AAM50661.1    GDHF01033000    JAI19314.1    ADMH02000335    ETN66919.1    AAAB01008960    EAA11750.4    CH902622    EDV34549.1    CM000366    EDX17753.1    APCN01000023    KQ435007    KZC13611.1    CH954180    EDV47286.1    GFDL01010752    JAV24293.1    DS232118    EDS35382.1    KF828783    AIN44100.1    UFQS01000039    UFQT01000039    SSW98113.1    SSX18499.1    AXCN02000452   

Proteomes

UP000218220    UP000283053    UP000007151    UP000053240    UP000053268    UP000076858    + More
UP000235965    UP000027135    UP000095301    UP000008820    UP000037069    UP000001070    UP000095300    UP000008744    UP000001819    UP000030765    UP000245037    UP000000305    UP000009192    UP000069940    UP000249989    UP000000803    UP000069272    UP000000673    UP000007062    UP000007801    UP000075902    UP000000304    UP000076407    UP000075840    UP000076502    UP000075882    UP000008711    UP000075903    UP000085678    UP000002320    UP000075880    UP000075901    UP000075884    UP000075886   

PRIDE

Q9VYL5   

Pfam

PF00664   ABC_membrane        + More
PF00005   ABC_tran

Interpro

IPR011527   ABC1_TM_dom        + More
IPR036640   ABC1_TM_sf       
IPR039421   Type_I_exporter       
IPR027417   P-loop_NTPase       
IPR017871   ABC_transporter_CS       
IPR003439   ABC_transporter-like       
IPR003593   AAA+_ATPase       

SUPFAM

SSF90123   SSF90123        + More
SSF52540   SSF52540       

Gene 3D

1.20.1560.10    

ProteinModelPortal

A0A2H1VPU5   A0A2A4IWJ2   A0A2H1VIQ3   A0A3S2NW93   A0A2H4KAW5   A0A212FNN3   + More
A0A194QYA3   A0A194QIC9   A0A0P4ZX17   A0A0P5E543   A0A0P5U6Y3   A0A0P5ZV27   A0A0P5TDA1   A0A0P5JL62   A0A0P5S0L7   A0A0N8C578   A0A0N8E4R5   A0A0P5V9Y6   A0A0P5PYE4   A0A0N7ZU64   A0A0P5ZW23   A0A0P6GLK6   A0A0P5DXX1   A0A0P4XS94   A0A0P4ZWB9   A0A0P6G9S4   A0A0P5YPA6   A0A0P6GI06   A0A0P5TF32   A0A0T6B5Z7   A0A0P6I9H4   A0A0N8A1N3   A0A0P5V6Z7   A0A0N8E5S6   A0A2J7PBH4   A0A067RAL4   T1PE36   A0A2J7PBG0   A0A1I8NEI4   Q17I35   A0A0L0BQU8   W8AYD4   A0A0A1XEY9   A0A1Y1LRP3   A0A1Y1LT88   A0A034VH39   A0A2H4TEP5   B4JNJ4   A0A1I8PBT0   B4GU29   Q29J72   A0A084WKF5   A0A0P5ZJ47   A0A2P8YZ46   E9GHP1   B4L6K4   A0A182GAI1   A0A0Q9XF01   A0A0K8VQ28   Q9VYL5   A0A182F9U1   A0A0K8TXX5   W5JVP9   Q7Q5Q2   B3MRZ4   A0A182TV50   B4R3Y6   A0A182X8Q5   A0A182I122   A0A154PP01   A0A182LLE1   B3NXB4   A0A182ULQ3   A0A1S3KF87   A0A1Q3F9U7   B0WV49   A0A158V4T9   A0A336LPL2   A0A182J1F7   A0A182S9W1   A0A182NJ88   A0A182QCH4  

PDB

5OCH     E-value=6.34583e-30,     Score=324

KEGG

101745509    K05655 ATP-binding cassette, subfamily B (MDR/TAP), member 8 | (RefSeq) ATP-binding cassette sub-fam

GO

GO:0005524   GO:0042626   GO:0016021   GO:0005743   GO:0005215   GO:0006810   GO:0004828   GO:0005737   GO:0006434   GO:0043564   GO:0006418   GO:0003824   GO:0055085  

PANTHER

PTHR24221  

Length:

271

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

48.89515

Exp number, first 60 AAs:

0.06153

Total prob of N-in:

0.44503

inside

1  -  121

TMhelix

122  -  144

outside

145  -  173

TMhelix

174  -  196

inside

197  -  271

 

 

Pi

26.751426

Theta

31.182308

Tajima's D

-0.704604

CLR

1.672803

CSRT

0.195590220488976

Interpretation

Uncertain