Gene

KWMTBOMO11678  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003978

Annotation

ribosomal_protein_L12_[Bombyx_mori]

Location

Bomo_Chr19(-):11155165-11157332      View in EpiBrowser

Full name

60S ribosomal protein L12      

Location in the cell

Mitochondrial   Reliability : 2.25

CDS

ATGCCCCCTAAGTTTGACCCAAATGAAATTAAAATCGTGAATTTGCGATGTGTCGGCGGGGAAGTCGGTGCCACATCATCTTTGGCCCCTAAAATCGGTCCTCTTGGTCTGTCTCCTAAAAAGGTGGGTGATGACATTGCCAAGGCCACAAGTGACTGGAAGGGTCTCAAGATCACTGTGCAGCTGACAGTTCAAAACAGACAAGCCCAGATAGCTGTTGTTCCCTCTGCAGCAGCCCTTATCATCAGAGCCCTTAAGGAGCCTCCTCGTGACCGTAAAAAGCAGAAAAATATCAAACACAACGGCAACATCTCCCTTGAAGATGTAATCGGCATTGCGAAGATCATGAGAAACAGATCAATGGCCCGGTACCTTTCTGGCTCAGTAAAAGAGATTCTTGGCACAGCACAGTCAGTTGGATGTACTGTGGAGGGCAGGCCGCCACATGATCTTATTGATGACATCAACAGCGGAGCTTTGACCATTGATGAATAA

Protein

MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE

Similarity

Belongs to the universal ribosomal protein uL11 family.

Keywords

Acetylation   Complete proteome   Isopeptide bond   Phosphoprotein   Reference proteome   Ribonucleoprotein   Ribosomal protein   RNA-binding   Ubl conjugation  

Feature

chain  60S ribosomal protein L12

Uniprot

Q5UAS7   D1LYK5   Q95V38   A0A2A4JRF7   A0A0K8SLX8   A0A3G1T1K5   + More
A0A346S728   E7DYZ0   I4DIN2   G0ZEA9   I4DM13   S4P4J1   A0A194QZR0   A0A3S2NWA3   A0A212FP56   A0A0L7LLL7   A7KCX6   E2B9X4   A0A151WVB0   E2A1L3   A0A195EBW1   F4WNI5   A0A195FVW7   A0A158NTZ0   A0A026WK55   A0A151IIG8   A0A154NZS2   A0A195B8E5   A0A0L7QNV2   T1PP54   A0A0N0BBU0   A0A2A3EG79   V9IIV8   A0A088A6M9   A0A1L8EHB3   A8C9X1   A0A0B8RPB7   A0A0L0C9A7   A0A1W4XMA3   A0A1L8EHE9   A0A2K6F7R6   U3FW68   A0A067QJK0   Q56FC1   F6R4R0   G3TJB5   Q28FK6   F7A7L1   A0A140TAC5   A0A034VCB2   B2RYU2   P23358   H0WGS5   A0A2I3H4H6   A0A2R8ZCZ6   A0A2U3WCL4   A0A3Q7QHD9   A0A2J7R5I5   A0A1I8Q8P4   A0A2K6GN20   A0A2P8Y6K5   A0A1S3G073   A0A2K6CIU8   A0A2K5Y3G6   A0A0D9SB72   A0A096P207   A0A2K6RBE9   A0A2K5P3A6   A0A2K5JHX6   G8F4M8   A0A2K6KZU6   F7AD35   Q8AVW0   A0A341CUT5   A0A2Y9DK90   A0A340YFV5   A0A2Y9EHS6   A0A2Y9NHI2   L9KLN4   A0A0N8EQF9   U5ELD9   A0A232F8S5   K7IZU1   A0A1V4J7B3   A0A2K5FAD7   A0A0A9WXZ9   G1PNL8   A0A0K8SJ19   A0A1U7QWV4   W5PNV0   A0A2I3TNI3   A0A2K5KJV2   G1PMR2   A0A109NIA8   A0A023EGC4   A0A250YAS6   G3QEE4   A0A0B8RZ72   A0A287AP66   A0A2R9ACW1  

Pubmed

19121390    14668217    30151374    22651552    26354079    23622113    + More
22118469    26227816    17603110    20798317    21719571    21347285    24508170    30249741    25315136    17760985    25476704    26108605    23915248    24845553    17495919    20431018    15057822    25348373    15489334    15632090    1977388    22722832    29403074    25362486    22002653    17431167    25319552    27762356    23385571    28648823    20075255    25401762    21993624    26823975    20809919    24945155    26483478    28087693   

EMBL

BABH01021730    AY769281    AAV34823.1    GU084279    ACY95312.1    AF429974    + More
ODYU01009243    AAL26576.1    SOQ53519.1    NWSH01000825    PCG74000.1    GBRD01011503    JAG54321.1    MG992421    AXY94859.1    MG665388    AXT16316.1    HQ424693    ADT80637.1    AK401150    KQ459185    BAM17772.1    KPJ03223.1    JF264987    AEL28818.1    AK402331    BAM18953.1    GAIX01005944    JAA86616.1    KQ460949    KPJ10465.1    RSAL01000136    RVE46233.1    AGBW02003976    OWR55480.1    JTDY01000654    KOB76320.1    EF207969    ABS57444.1    GL446605    EFN87561.1    KQ982706    KYQ51859.1    GL435766    EFN72686.1    KQ979074    KYN22718.1    GL888237    EGI64178.1    KQ981215    KYN44588.1    ADTU01002831    KK107167    QOIP01000010    EZA56353.1    RLU17851.1    KQ977477    KYN02457.1    KQ434786    KZC05176.1    KQ976565    KYM80469.1    KQ414843    KOC60300.1    KA649778    AFP64407.1    KQ435955    KOX68042.1    KZ288263    PBC30302.1    JR047486    AEY60431.1    GFDG01000687    JAV18112.1    EU032349    ABV44716.1    GBSH01002322    JAG66704.1    JRES01000737    KNC28851.1    GFDG01000688    JAV18111.1    GAEP01001345    JAB53476.1    KK853284    KDR08977.1    AY961578    AY961579    AAX62481.1    CR761927    CAJ82729.1    AAMC01107471    AAMC01107472    AABR07051452    GAKP01019527    JAC39425.1    BC166903    CH474001    AAI66903.1    EDL93198.1    X53504    AAQR03035808    ADFV01040879    AJFE02093697    NEVH01006994    PNF36104.1    PYGN01000865    PSN39892.1    AQIB01129399    AHZZ02009244    AQIA01025449    JH330932    EHH62242.1    JSUE03014156    JU471760    CM001267    AFH28564.1    EHH24237.1    BC041240    CM004481    AAH41240.1    OCT65205.1    KB320843    ELW62022.1    GDIQ01003996    JAN90741.1    GANO01001446    JAB58425.1    NNAY01000704    OXU26890.1    LSYS01008925    OPJ67944.1    GBHO01031303    JAG12301.1    AAPE02053501    GBRD01013031    GDHC01014957    JAG52795.1    JAQ03672.1    AMGL01028769    AAPE02044263    KC507335    AHB12458.1    JXUM01122192    GAPW01005201    KQ566577    JAC08397.1    KXJ70006.1    GFFW01004067    JAV40721.1    CABD030066846    GBZA01000556    JAG69212.1    AEMK02000005    AJFE02077417   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    + More
UP000037510    UP000008237    UP000075809    UP000000311    UP000078492    UP000007755    UP000078541    UP000005205    UP000053097    UP000279307    UP000078542    UP000076502    UP000078540    UP000053825    UP000095301    UP000053105    UP000242457    UP000005203    UP000037069    UP000192223    UP000233160    UP000027135    UP000002280    UP000007646    UP000008143    UP000002494    UP000005225    UP000001073    UP000240080    UP000245340    UP000286641    UP000235965    UP000095300    UP000245037    UP000081671    UP000233120    UP000233140    UP000029965    UP000028761    UP000233200    UP000233060    UP000233080    UP000009130    UP000233100    UP000233180    UP000006718    UP000186698    UP000252040    UP000248480    UP000265300    UP000248484    UP000248483    UP000011518    UP000215335    UP000002358    UP000190648    UP000233020    UP000001074    UP000189706    UP000002356    UP000002277    UP000069940    UP000249989    UP000001519    UP000008227   

PRIDE

Q5UAS7    P23358    A0A287AP66   

Pfam

PF00298   Ribosomal_L11        + More
PF03946   Ribosomal_L11_N

Interpro

IPR020785   Ribosomal_L11_CS        + More
IPR036769   Ribosomal_L11_C_sf       
IPR020783   Ribosomal_L11_C       
IPR020784   Ribosomal_L11_N       
IPR036796   Ribosomal_L11/L12_N_sf       
IPR000911   Ribosomal_L11/L12       

SUPFAM

SSF46906   SSF46906        + More
SSF54747   SSF54747       

Gene 3D

1.10.10.250     3.30.1550.10    

CDD

cd00349  Ribosomal_L11

ProteinModelPortal

Q5UAS7   D1LYK5   Q95V38   A0A2A4JRF7   A0A0K8SLX8   A0A3G1T1K5   + More
A0A346S728   E7DYZ0   I4DIN2   G0ZEA9   I4DM13   S4P4J1   A0A194QZR0   A0A3S2NWA3   A0A212FP56   A0A0L7LLL7   A7KCX6   E2B9X4   A0A151WVB0   E2A1L3   A0A195EBW1   F4WNI5   A0A195FVW7   A0A158NTZ0   A0A026WK55   A0A151IIG8   A0A154NZS2   A0A195B8E5   A0A0L7QNV2   T1PP54   A0A0N0BBU0   A0A2A3EG79   V9IIV8   A0A088A6M9   A0A1L8EHB3   A8C9X1   A0A0B8RPB7   A0A0L0C9A7   A0A1W4XMA3   A0A1L8EHE9   A0A2K6F7R6   U3FW68   A0A067QJK0   Q56FC1   F6R4R0   G3TJB5   Q28FK6   F7A7L1   A0A140TAC5   A0A034VCB2   B2RYU2   P23358   H0WGS5   A0A2I3H4H6   A0A2R8ZCZ6   A0A2U3WCL4   A0A3Q7QHD9   A0A2J7R5I5   A0A1I8Q8P4   A0A2K6GN20   A0A2P8Y6K5   A0A1S3G073   A0A2K6CIU8   A0A2K5Y3G6   A0A0D9SB72   A0A096P207   A0A2K6RBE9   A0A2K5P3A6   A0A2K5JHX6   G8F4M8   A0A2K6KZU6   F7AD35   Q8AVW0   A0A341CUT5   A0A2Y9DK90   A0A340YFV5   A0A2Y9EHS6   A0A2Y9NHI2   L9KLN4   A0A0N8EQF9   U5ELD9   A0A232F8S5   K7IZU1   A0A1V4J7B3   A0A2K5FAD7   A0A0A9WXZ9   G1PNL8   A0A0K8SJ19   A0A1U7QWV4   W5PNV0   A0A2I3TNI3   A0A2K5KJV2   G1PMR2   A0A109NIA8   A0A023EGC4   A0A250YAS6   G3QEE4   A0A0B8RZ72   A0A287AP66   A0A2R9ACW1  

PDB

6D9J     E-value=6.01328e-69,     Score=657

KEGG

692666    K02870 large subunit ribosomal protein L12e | (RefSeq) RpL12; ribosomal protein L12

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0015934   GO:0022625   GO:0000027   GO:0019843   GO:0070180   GO:0045901   GO:0014069   GO:0005730   GO:0007264   GO:0006468   GO:0006811   GO:0016020   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR11661  

Length:

164

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14022

Exp number, first 60 AAs:

0.01859

Total prob of N-in:

0.03631

outside

1  -  164

 

 

Pi

242.068838

Theta

224.432419

Tajima's D

0.081602

CLR

0

CSRT

0.394130293485326

Interpretation

Uncertain