Silkworm Genome Informatics Database

Gene

KWMTBOMO11677

Pre Gene Modal

BGIBMGA003979

Annotation

S33901_reverse_transcriptase_-_silkworm_transposon_Pao

Location

Bomo_Chr19(-):11137474-11148582 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.23

CDS

ATGGCGTCACCGCAAGACTGTTTGTATATTTCTTTACTTGGTTTAGCGGAACATTTTCGAACTTCTAATCCCCCTGACATAAAAAGTTGTATCCAGTGCTTACAAGCTGTGTTTAATTTTAATCCGCCAGCAAGGGTAGAAGCCAGGACTCATTTACAACTCGGTAATATACTTTTGACACACACCAAAAACATCGACTTGGCGAGAACGCACTTAGAGCAAAGTTGGTGCTTATCACAAACTACAAATGCTTTAGACGAGTTCAAGTTCGAGGCAGCTAGCGTTCTTGCTGAGCTATTTGAGCAGCAAGGTCAACCTGCACATTCTAAACCAATTCTAAGGAAAGCAATAGAGTTATCACAACATAGTGTATATTGGCATTGTAGACTCATTTTTCAACTGGCTCAAATACATGCTACAGAGAAAGAGTATGAAGTGGCCAGTAGTCTACTTGGTGTTGGTGTGGATTATGCACAAATATCAAATGTGGCATATACACAAGTACTGTTCTTGTTAAGTAGGGTAATGTTATTATTAATAGATAAGAAAATTCAAGAAGTGTTACCATTATTAAATCAAGCTGGACATTTAGTAGATTCTTGGACAGGAAGAGGTCGGATCGAAACTAAACAATCGCCGCCCTCAGAAACCACAGCTACAATACAGAGCGTGTGGACAGAAACAACCGCGAATACCGTCATGAGTCTGGTAGCCCCCACAGCAGAATCATCGTGCGCAACAGCCAACATGGAAGCCACGATGAAAGTCGCAGAGAAACCTGGGAACTCAAAAACAGAGGCCGTCAAACAGTATATAGCCAAACAGAATGACGTGCCAACAAAACAGCGCGCCGGTACAGTCAAAACTGACCGGTCGCGAAACAGAAAAGAACAGAAGATAGCCAAAGCTAGAGAAGAGCTCGCCCGCCTACAGGTGGAGTTAGCAGCCGCCCGATTGGCCACGCTCGAAGCTGGATCTGATGACGAAAACAGCGAATCAGAATACAGTAAGTCAGAACTCGACGAAAGAGTGGGCACGTGGTTGGAAACGCAACCCACAAAAATGGAAAATCACGACCGACATAAGGAAACACCGGCGGGAGCCTGCGACAAACAAGACTTCTCAGATCTAACCGCAGCAATAACACTCGCCGTCAAAGCCGCCCGCGAACCAAGATACACAGAATTGCCATTCTTTAATGGAAATCACCAAGACTGGCTATCCTTTCGTGCAGCCTATCACGAGACGATGAATTCATTTACAAAAACAGAAAATATAAACAGACTCAGAAGGAACCTGAAAGGAAGGGCAAAGGAAGCCGTTGACGGATTACTTATAACGAACGCTGATCCGTCCGACGTCATAAGAAGTCTAGAAGCGCGATTCGGAAGACCGGAAACAATAGCCATAACGGAGTTAGACACGCTACGAGCTCTGCCAAGACTAACAGAAACACCAAGAGACATTTGTATATTCTCCAGTAAGGTGACCAACGCCGTAGCTACGCTTCGTGCATTAAATTGCACACATTACTTATATAATCCGGAAACTACCAAAACAATGTTAGAAAAACTCACACCAACACTACGTTACCGATACTACGACTTCACCGCGATACAACCGAAGGAGGATCCGGATCTGATTAAATTTGAAAAATTCATGAAAAGAGAAGCCGAACTGTGCAGCCCTTATGCACAGCCTGAACAGGTGGGGCACTACTCGCAGCCCGCACAACATAACAGACGCACACAAAACGTGCACATAGTCAGTGAGAAGCCATCACGAGCTAAATGTCCGGTATGTAGCAACACTGAACACACCACAACAGACTGCTACATATTCAAGAAGGCAGACTCAAACACAAGATGGGATATCGCTAAGAATAAACACCTGTGTTTCCGATGTCTCAAGTATAGAAATAAAACCCACCACTGTAAACCGAAGACGTGTGGCATTAATGATTGCAAATATACTCACAACAAGATGCTACACTTCGACAGAAAAATTGAAAAAACAGACAAGAGTGACAAGGAAACAACAGAGAACATTAATTCCGCTTGGACCGGAAAACAGAAACAGTCCTATTTGAAAATAATCCCAGTCCAAGTACAAGGACCGATAGGCACGGTTGATACATACGCGCTGCTCGACGATGGATCAACGGTGACACTCATAGACGAAATCATTTGCAAGAAGACTGGAATAACAGGACCAATCGATCCGTTACACATACAGGCGATTAACAACATAAAATCAACGGAAACAAGGTCAAGAAGAGTCAACCTCACGCTCAGAGGCCTCAACAGTCGAAAAGAAATAATACAAGCGAGAACAGTTAACGACCTACAAGCAACAGCACAAAAAATACCAAAGGAACAGATAGATGAGTATTCGCACCTACGAGACATCAGTGACATCATCACGTACGAGAACGCGAAACCTGGAATCCTGATTGGCCAAGACAACTGGCACATGTTACTAACTTCAAAAGTTAGACGAGGCAACAGGAATCAGCCAATAGCGTCACTGACACCTCTAGGCTGGGTATTGCATGGAGGTCGCACTCGTACCCTAGGCCACCACATAAACTACATAAATCATGCTAGCGAAACCCAAGAAGATGATAAAATAGAAAATCTGATAAAACAGTATTTCGCTATGGATGCGCTATGCATCACACCAAGAAAACCAAAAACAGACCCAGAGGAACAGGCGCTTCGCATCCTCAACAGCAATACAGTCCACACAACAGATGGAAGATACGAAACTGCTCTGCTCTGGAAAACAGATAATGTCAGTCTACCAGACAACTACAATAACTCGTTAAAGCGACTGATAAATATAGAAAACAAACTCGATCGTAATCCGGAACTGAAACAGAAATACACAGAACAGATGGAAGCACTCGTCGCGAAAAGCTACGCCGAGCCCGCTCCAAAAACAAAAACAGAGAACAGAACGTGGTATCTACCTCACTTCGCCGTCGTGAACCCCCTGAAGCCGGAAAAACTCCGAGTCGTCCACGACGCCGCCGCCAGAACAAGAGGGGTAGCTTTGAATGATATGCTGCTTAAGGGACCGGACCTACTCCAATCACTACCAGGAGTGATAATGCGATTTAGACAGCATAATATAGCAGTAACAGCAGACATCAAGGAGATGTTAATGCAAGTGAAATTAAGACATGAAGACAGAGACGCGCTCCGTTATCTCTGGCGCAAAGATCAGCGAGATGACAAGCCCCCAGAAGAAAACAGAATGACCTCGTTGATCTTCGGGGCGTCAAGTTCTCCTTCCACAGCAATGTATGTAAAGAACTTGACCGCCCAGAAACAAGAAGCCACGCACCCGGAGGCGGCAGTCGCAGTACAGAACAGACACTACGTCGACGACTACTTGAACAGCTTCAAAAGTTTAAAAGTACACACAACTACAGACTTTCGTCGAAAACACGAAAGAAAACCGACCTCGAAGACCTTCTGGACCGACAGTAAGATAGTGTTGAGACGGACAAGGACGGGATCACGCTCGTACAAACCTTACGTCACCCAACGCCTGACAGCTATAGAAGACAGTGCAACAGTATGTCACTACCTTATGGCAGGACAGGTGAAGAGTGTGAAGCCATGTCTAAAGCAACTGCAACAGAGCATACAGACAATAATGGCACCGACATGGCCTGATGATGATGCTGTGTGCGGTACGGTTCCCGGCGAGTCGTTCATCTGGTTGTCGCGACAGCAGCTGTACGTCCTCGTGTACCTGGTCACAGTGATGCATTCAGCACAAGCCGGCTACATGGACAAGGCGCACAAGTACACAGAAAAGGCTCTAGCACAGATTGATAAACTTACTTCGAGCGCGGGCGAGGAGGCTGGCGGCGCGGAGCGGCAGTCCCGCGGCGCGACGCTGGCGTGGCGGCTGCGCATGGCGCTGGTGGAGCACGCGGCGCTGTGCCGCCTCGTGGCCGGCGGCAAGGCGCACGCGCTCAACGAGATCGCACGCGCCGCGCACCTGCTCACCGTCGCGCCCACGCGTACGTATCCGCATCTAATAATAGGCTTTTGA

Protein

MASPQDCLYISLLGLAEHFRTSNPPDIKSCIQCLQAVFNFNPPARVEARTHLQLGNILLTHTKNIDLARTHLEQSWCLSQTTNALDEFKFEAASVLAELFEQQGQPAHSKPILRKAIELSQHSVYWHCRLIFQLAQIHATEKEYEVASSLLGVGVDYAQISNVAYTQVLFLLSRVMLLLIDKKIQEVLPLLNQAGHLVDSWTGRGRIETKQSPPSETTATIQSVWTETTANTVMSLVAPTAESSCATANMEATMKVAEKPGNSKTEAVKQYIAKQNDVPTKQRAGTVKTDRSRNRKEQKIAKAREELARLQVELAAARLATLEAGSDDENSESEYSKSELDERVGTWLETQPTKMENHDRHKETPAGACDKQDFSDLTAAITLAVKAAREPRYTELPFFNGNHQDWLSFRAAYHETMNSFTKTENINRLRRNLKGRAKEAVDGLLITNADPSDVIRSLEARFGRPETIAITELDTLRALPRLTETPRDICIFSSKVTNAVATLRALNCTHYLYNPETTKTMLEKLTPTLRYRYYDFTAIQPKEDPDLIKFEKFMKREAELCSPYAQPEQVGHYSQPAQHNRRTQNVHIVSEKPSRAKCPVCSNTEHTTTDCYIFKKADSNTRWDIAKNKHLCFRCLKYRNKTHHCKPKTCGINDCKYTHNKMLHFDRKIEKTDKSDKETTENINSAWTGKQKQSYLKIIPVQVQGPIGTVDTYALLDDGSTVTLIDEIICKKTGITGPIDPLHIQAINNIKSTETRSRRVNLTLRGLNSRKEIIQARTVNDLQATAQKIPKEQIDEYSHLRDISDIITYENAKPGILIGQDNWHMLLTSKVRRGNRNQPIASLTPLGWVLHGGRTRTLGHHINYINHASETQEDDKIENLIKQYFAMDALCITPRKPKTDPEEQALRILNSNTVHTTDGRYETALLWKTDNVSLPDNYNNSLKRLINIENKLDRNPELKQKYTEQMEALVAKSYAEPAPKTKTENRTWYLPHFAVVNPLKPEKLRVVHDAAARTRGVALNDMLLKGPDLLQSLPGVIMRFRQHNIAVTADIKEMLMQVKLRHEDRDALRYLWRKDQRDDKPPEENRMTSLIFGASSSPSTAMYVKNLTAQKQEATHPEAAVAVQNRHYVDDYLNSFKSLKVHTTTDFRRKHERKPTSKTFWTDSKIVLRRTRTGSRSYKPYVTQRLTAIEDSATVCHYLMAGQVKSVKPCLKQLQQSIQTIMAPTWPDDDAVCGTVPGESFIWLSRQQLYVLVYLVTVMHSAQAGYMDKAHKYTEKALAQIDKLTSSAGEEAGGAERQSRGATLAWRLRMALVEHAALCRLVAGGKAHALNEIARAAHLLTVAPTRTYPHLIIGF

Uniprot

V9GZQ1

Pubmed

8389039

EMBL

L09635 AAA75005.1

PRIDE

V9GZQ1

Pfam

PF03564 DUF1759

Interpro

IPR005312 DUF1759

ProteinModelPortal

V9GZQ1

KEGG

101739489 K11266 MAternally affected uncoordination | (RefSeq) MAU2 chromatid cohesion factor homolog

GO

GO:0003964 GO:0005515 GO:0007064 GO:0016020 GO:0007264 GO:0006468 GO:0006811 GO:0043564 GO:0006418 GO:0003824

Length:

1355

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.3984

Exp number, first 60 AAs:

0.00049

Total prob of N-in:

0.00328

outside

1 - 1355

Pi

145.862353

Theta

113.519313

Tajima's D

0.785489

CLR

0.083976

CSRT

0.60101994900255

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree