Gene

KWMTBOMO11652

Pre Gene Modal

BGIBMGA004127

Annotation

PREDICTED:_phosphorylated_adapter_RNA_export_protein_[Amyelois_transitella]

Location

Bomo_Chr19(+):10672158-10677782      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.928

CDS

ATGATGTCGACAACAGAAGTGGAAATAGACTTTGATCCAACAAGCGAGCGCGAAGAGGGGGAGTTGGAAGATTCAGATGTAGAAGAAGGTACCTATATCCCCTTAACAAGACCAGAAGCTTTCAACCCTCCATCCTTAGTACACATGCAAATTCAAGATGAACAAAGCGATGATCCATCACCAGAGTCATCAGCTACAGATTCTGATGAAGAACCCAGGAGGCGTGCTAAACGCACAAAAGTCAGACCAAGAAGGCCGCAACCTCAACCCCAAAATAATAAAAGGGAGAAATATAATGTGTGGTATAGAGCTTTGCAGGAAGAACTACTCTCGGAAGACATGATTGGTTTCGATGTCTCAAAGAAACGAAGATATGGTGTTGAATCTTATGATTACACAATAAAGTACCGATTAGAAGAAGAGTTAGCATCAGGAAATGCTTTTACAAAAAATAGCAACTCCAATAGAGATGTGACGTCTAACAAACGAAAGCACTCTGACAGATCTAATGTAAAGCTAAGATTGGGTAAAAGAATTAATAGTAATTCTCATATTGAAGAGAAACATGCTCCAAAATACTTGAAGGATTTGATGGTTAATGCAGAAGATCCGTTAGATATAGTAGCATCTGATATAGCTGATAAATTATCAGAAGAAAAAAAAGAATTAATACACAGAATCGTAGGAGCAATTGGATCACAGAAAGCAATGGAATTGTTTAAAGAAACACAGAAAATAGAGGCTGATGGTGGCATGCTTGTAATGAATGGAACACGTCGTAGGACCCCAGGCGGTGTGTATTTTTTTCTTCTGAAGCGTGATGACGAAATCTCCCAGGACGTAGTCAGTAAACTTTTCGCTGAAGAAAAAAAGGAGAATACGCGCCGTATAAAGAAAATTCACAATAAAAGTCGTCAGAAAGCTATGGAGCAACTAAAACAAACTTTAACCGACTCGGAGCTACCGTCGTTAGTATCTCGCGGCGAGACAACGGCACAATCGGAGCACGGATCGAATCCACCCCCCTCCCCGGCGACGGACGCCCGTGAGTGTTCCAGTGACACGGACGCGCACTCGCACACTGAGGCGGACGCGCACGCACTAACAGAGGAGCACTCGCACGCGCGAACACAGGCGGACGCGCCTGCGCCGTCAGCACCTGCCGCCCCGTCCGTCAGCAACGACCCCCGCTCCATACAAGAATACGAAGACGACGACTTCCTTGATGTCATGTGTAATGATGACATGGACCTGTTCTAA

Protein

MMSTTEVEIDFDPTSEREEGELEDSDVEEGTYIPLTRPEAFNPPSLVHMQIQDEQSDDPSPESSATDSDEEPRRRAKRTKVRPRRPQPQPQNNKREKYNVWYRALQEELLSEDMIGFDVSKKRRYGVESYDYTIKYRLEEELASGNAFTKNSNSNRDVTSNKRKHSDRSNVKLRLGKRINSNSHIEEKHAPKYLKDLMVNAEDPLDIVASDIADKLSEEKKELIHRIVGAIGSQKAMELFKETQKIEADGGMLVMNGTRRRTPGGVYFFLLKRDDEISQDVVSKLFAEEKKENTRRIKKIHNKSRQKAMEQLKQTLTDSELPSLVSRGETTAQSEHGSNPPPSPATDARECSSDTDAHSHTEADAHALTEEHSHARTQADAPAPSAPAAPSVSNDPRSIQEYEDDDFLDVMCNDDMDLF

Uniprot

H9J3P0   A0A212F894   A0A2A4JGW0   A0A194QCV4   A0A2H1VB50   A0A194QYX3   + More
A0A067QQ74   Q17JH5   A0A2J7QK82   A0A2J7QK83   K7J426   A0A182GQA5   A0A0L7KVP0   A0A182NU76   B3MDI1   B0W7L5   A0A0J7KG34   A0A084VNC7   A0A1W4UL35   A0A182MIY3   A0A182JD89   A0A182RC89   A0A182W799   A0A182Y028   A0A182QL64   B4GHZ4   A0A1Q3F8V3   W8CCK6   B4P3X3   A0A1Q3F8W5   Q6NL95   A1Z7P3   Q8SYG4   A0A154NXC2   B5E1K3   A0A3B0JTM6   A0A088ATE3   A0A182TLT8   A0A182V1D9   B3N7L3   A0A182WU94   A0A310S6A8   A7UUQ7   A0A1S4GXV8   A0A182L1N6   A0A182HUW1   A0A182JTL6   A0A1Y1L5H6   B4HSM3   A0A0J9TX25   B4QGS1   A0A1W4XSE9   A0A1S4GX40   A0A182P4W3   B4ME34   A0A182F6E1   T1GS94   D6WRL0   A0A034W651   B4NN62   A0A0A1WF20   A0A0L0CKM8   A0A1I8PIF7   N6TZA0   W5JHM8   U4TZT2   A0A182S7B7   A0A1I8MSM5   A0A1A9XY35   A0A0T6B7M7   T1PDI8   A0A1A9ZUX2   A0A1B0FR66   A0A1A9UU16   A0A1B6K0G5  

Pubmed

19121390    22118469    26354079    24845553    17510324    20075255    + More
26483478    26227816    17994087    24438588    25244985    24495485    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    12364791    20966253    28004739    22936249    18362917    19820115    25348373    25830018    26108605    23537049    20920257    23761445    25315136   

EMBL

BABH01021684    AGBW02009781    OWR49929.1    NWSH01001413    PCG71315.1    KQ459185    + More
KPJ03249.1    ODYU01001608    SOQ38070.1    KQ460949    KPJ10489.1    KK853060    KDR11905.1    CH477232    EAT46865.1    NEVH01013275    PNF28992.1    PNF28993.1    AAZX01001009    JXUM01080070    KQ563163    KXJ74362.1    JTDY01005270    KOB67175.1    CH902619    EDV36429.1    DS231854    EDS38050.1    LBMM01007825    KMQ89393.1    ATLV01014737    KE524984    KFB39471.1    AXCM01004940    AXCN02000772    CH479183    EDW36114.1    GFDL01011044    JAV24001.1    GAMC01003531    JAC03025.1    CM000157    EDW89456.1    GFDL01011034    JAV24011.1    AE013599    BT012442    AAM68804.1    AAS93713.1    AAF58985.3    AY071573    AAL49195.1    KQ434777    KZC04253.1    CM000071    EDY69126.1    OUUW01000001    SPP74428.1    CH954177    EDV59418.1    KQ797156    OAD46975.1    AAAB01008964    EDO63592.1    APCN01002480    GEZM01066947    JAV67630.1    CH480816    EDW47050.1    CM002911    KMY92435.1    CM000362    EDX06296.1    CH940662    EDW58799.1    CAQQ02093897    KQ971354    EFA05976.1    GAKP01009719    JAC49233.1    CH964282    EDW85801.2    GBXI01017026    JAC97265.1    JRES01000265    KNC32820.1    APGK01045466    KB741037    ENN74595.1    ADMH02001153    ETN63877.1    KB631710    ERL85548.1    LJIG01009379    KRT83198.1    KA646759    AFP61388.1    CCAG010007333    GECU01002772    JAT04935.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000027135    + More
UP000008820    UP000235965    UP000002358    UP000069940    UP000249989    UP000037510    UP000075884    UP000007801    UP000002320    UP000036403    UP000030765    UP000192221    UP000075883    UP000075880    UP000075900    UP000075920    UP000076408    UP000075886    UP000008744    UP000002282    UP000000803    UP000076502    UP000001819    UP000268350    UP000005203    UP000075902    UP000075903    UP000008711    UP000076407    UP000007062    UP000075882    UP000075840    UP000075881    UP000001292    UP000000304    UP000192223    UP000075885    UP000008792    UP000069272    UP000015102    UP000007266    UP000007798    UP000037069    UP000095300    UP000019118    UP000000673    UP000030742    UP000075901    UP000095301    UP000092443    UP000092445    UP000092444    UP000078200   

PRIDE

H9J3P0    Q6NL95    A1Z7P3    Q8SYG4   

Pfam

PF10258   RNA_GG_bind

Interpro

IPR039047   PHAX        + More
IPR038092   PHAX_RNA-binding_sf       
IPR019385   PHAX_RNA-binding_domain       

Gene 3D

1.10.10.1440    

ProteinModelPortal

H9J3P0   A0A212F894   A0A2A4JGW0   A0A194QCV4   A0A2H1VB50   A0A194QYX3   + More
A0A067QQ74   Q17JH5   A0A2J7QK82   A0A2J7QK83   K7J426   A0A182GQA5   A0A0L7KVP0   A0A182NU76   B3MDI1   B0W7L5   A0A0J7KG34   A0A084VNC7   A0A1W4UL35   A0A182MIY3   A0A182JD89   A0A182RC89   A0A182W799   A0A182Y028   A0A182QL64   B4GHZ4   A0A1Q3F8V3   W8CCK6   B4P3X3   A0A1Q3F8W5   Q6NL95   A1Z7P3   Q8SYG4   A0A154NXC2   B5E1K3   A0A3B0JTM6   A0A088ATE3   A0A182TLT8   A0A182V1D9   B3N7L3   A0A182WU94   A0A310S6A8   A7UUQ7   A0A1S4GXV8   A0A182L1N6   A0A182HUW1   A0A182JTL6   A0A1Y1L5H6   B4HSM3   A0A0J9TX25   B4QGS1   A0A1W4XSE9   A0A1S4GX40   A0A182P4W3   B4ME34   A0A182F6E1   T1GS94   D6WRL0   A0A034W651   B4NN62   A0A0A1WF20   A0A0L0CKM8   A0A1I8PIF7   N6TZA0   W5JHM8   U4TZT2   A0A182S7B7   A0A1I8MSM5   A0A1A9XY35   A0A0T6B7M7   T1PDI8   A0A1A9ZUX2   A0A1B0FR66   A0A1A9UU16   A0A1B6K0G5  

PDB

2XC7     E-value=1.49434e-15,     Score=202

KEGG

101741753    K14291 phosphorylated adapter RNA export protein | (RefSeq) phosphorylated adapter RNA export protei

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0006408   GO:0005623   GO:0003723   GO:0005634   GO:0005737  

PANTHER

PTHR13135  

Length:

419

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00812

outside

1  -  419

 

 

Pi

150.668999

Theta

151.295114

Tajima's D

0.079397

CLR

10.651193

CSRT

0.385780710964452

Interpretation

Uncertain