SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11647
Pre Gene Modal
BGIBMGA004126
Annotation
PREDICTED:_uncharacterized_protein_LOC106102540_[Papilio_polytes]
Location
Bomo_Chr19(+):10473213-10493941      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.795
 

Sequence

CDS
ATGGGAACGACGTACAAAGAGTGTTTTAAATTATACGACTTAATTCAGAACGGCAAGTTCAGTTCAGTGAAGCATTTCATATCTAAAAATACAACTAACATCAATGTGGTGCTACCGTGCAAAGGGATTGGAGTGCTGCATCTTGCTGTTGGTATTGAGCCTTTAGAAAAATCAAAGGAATGCACAGAATTGCTCCTGAAGAAGGGAGGTGATCCTAATCTTTGTAATGACGACGGTGTAACTCCGGTACACATAGCGGCGATATGGGGCCGCGTCGACAACCTGAAACTCTTGCTCGGCTGCGGAGGAGATCCCTATGTACGGGACCTCGACGGGCTGACTGCCTTTGACTACGCTGCCAGAGAACAGCAGTGGAACGTATTTGACTACCTACAGAATGTAGTGGACGAATCCAATGACGTGGGCACTGGTTGCGGGTACACTATGGACTTGGAACGAATTCTGGTTACAACGGACAATATGGTGGCTGAATACGAACCGATAACTGACGAACAAATGCAAAACAAGACGTACAGAAAATCCGACATGATCCGTCAGTGGTTCGACGATAACAGTTTGGTTATAAACAAACTGTACCCGACTATATTAGGCGAAACGTACCTTATAGACGACTTCCAAAGTATCACGTTGGACCTGACCGAATCGCACGACACGAACAATACGTTCAGGACTTGCCGATCGAATGGGGACGTGGAAATAAGCGGCGTTAAGCCTCTAGATTGTACCGTTGACAAAACAGGAGATCCCAGGAAGCAGAGGTTGAGCGTTTTCGAAAACTTCTCGCTCCCCGGATCCCCAAATAACATAACGCATATGAATTACAATACGAAATCGTCTTTAAAGAAATCAAAAACGATCGAAACAAAAGAGATTCCGAGAGATGACCGCGAACTCGATAAAGCTATGGCGGTCGTACAGAATAGGACAAACGAATTTCTGTCTTCGACTAATGTAGATAGAGTATGTAATACAAGGAGATCGTCTAACAGCAGCGGAGTGAGCAGTAATTATTCTGGTGGCAGCATCACTATAGCTAGTTTCCACGAGGAATACAAGTATGAGGATAAAGAAGAAGATGTAGTGCTCGTTGAGAAGAGACTGCGAGTTTCGCCTATTGTCTTACCCCTGGAAGAGACAGTGGAATCGATTGACCAAACAGCAGTTTCGGTGGCATCTTCCCTACCGACCACGGTACAGTACGACAATAACACTCTCAGAGCGGAACTCTTGAAGTTAGGCTTCTCGCCGGGTCCCATACAGGATTCAACAAGGACTCTTTATCTAAAGAAATTGCAAGCCTTGAAGCAAACCCCAGTGGTCGTGAACAGCCAGGGCAAAACGTACAGTGTCGAATTAGAAAAATCTCTACGTAACGTTGATTGGATGCTGAATCTCCAACAGTATGTTGAGTTGGAAAGCAAAGCGCGCGCCGATTTCGCTAATCCCAATAAAAAATGGCGGGAAGGCACGGCGAAGACTTCCTTCACGTATCTTCTCTTGGATCCGCGACTCACGCACAATCTCCCGGAGAGAGCCAGCAAACAAAACCAACATGTCTCTTGGGTCACTTTTGTAAACTCCATATTTTACGTCGGGAAAGGTAAACGTTCTCGGCCCTATTCTCACCTATACCAAGCGCTGACCCTGTGGAAGCGCGACTTCAAAACGTCTAAAGACAAGAAAGTTCAGCAAATCCTCGACATATGGTCGGATAAGGTGGGCGTAGTTTGTCTTCACATATTTCAGAACGTCATACCGGCGGAAGCGTACACGTACGAAGCGGCCATGATCGATGTGCTCGGAATAAATAATATTAAGAATTTGAAGGCTGGCAACTATTACGGTGTTGCCGCCTCCTGGCCGTTGAAAGAGAGAAGGCTGCTCGGTTTGTACTTATTGTACAAGGCCATGCTGATCTTCCTTAGCGAGGGCGAAAGACAATTAAGGCCTGATGATATAGACTGA
Protein
MGTTYKECFKLYDLIQNGKFSSVKHFISKNTTNINVVLPCKGIGVLHLAVGIEPLEKSKECTELLLKKGGDPNLCNDDGVTPVHIAAIWGRVDNLKLLLGCGGDPYVRDLDGLTAFDYAAREQQWNVFDYLQNVVDESNDVGTGCGYTMDLERILVTTDNMVAEYEPITDEQMQNKTYRKSDMIRQWFDDNSLVINKLYPTILGETYLIDDFQSITLDLTESHDTNNTFRTCRSNGDVEISGVKPLDCTVDKTGDPRKQRLSVFENFSLPGSPNNITHMNYNTKSSLKKSKTIETKEIPRDDRELDKAMAVVQNRTNEFLSSTNVDRVCNTRRSSNSSGVSSNYSGGSITIASFHEEYKYEDKEEDVVLVEKRLRVSPIVLPLEETVESIDQTAVSVASSLPTTVQYDNNTLRAELLKLGFSPGPIQDSTRTLYLKKLQALKQTPVVVNSQGKTYSVELEKSLRNVDWMLNLQQYVELESKARADFANPNKKWREGTAKTSFTYLLLDPRLTHNLPERASKQNQHVSWVTFVNSIFYVGKGKRSRPYSHLYQALTLWKRDFKTSKDKKVQQILDIWSDKVGVVCLHIFQNVIPAEAYTYEAAMIDVLGINNIKNLKAGNYYGVAASWPLKERRLLGLYLLYKAMLIFLSEGERQLRPDDID

Summary

Uniprot
H9J3N9   A0A3S2NP85   A0A194QE84   A0A2H1VKE7   A0A194QZU0   A0A2A4JKY5   + More
A0A212FA73  
Pubmed
19121390    26354079    22118469   
EMBL
BABH01021675    RSAL01000182    RVE44910.1    KQ459185    KPJ03255.1    ODYU01003025    + More
SOQ41276.1    KQ460949    KPJ10495.1    NWSH01001127    PCG72469.1    AGBW02009513    OWR50637.1   
Proteomes
UP000005204    UP000283053    UP000053268    UP000053240    UP000218220    UP000007151    + More
PRIDE
H9J3N9   
Pfam
PF03020   LEM        + More
PF12796   Ank_2
Interpro
IPR002110   Ankyrin_rpt        + More
IPR011015   LEM/LEM-like_dom_sf       
IPR034998   ANKLE1       
IPR036770   Ankyrin_rpt-contain_sf       
IPR003887   LEM_dom       
IPR020683   Ankyrin_rpt-contain_dom       
IPR000305   GIY-YIG_endonuc       
SUPFAM
SSF63451   SSF63451        + More
SSF48403   SSF48403       
Gene 3D
1.10.720.40     1.25.40.20    
CDD
cd00204  ANK
ProteinModelPortal
H9J3N9   A0A3S2NP85   A0A194QE84   A0A2H1VKE7   A0A194QZU0   A0A2A4JKY5   + More
A0A212FA73  
PDB
5EIL     E-value=7.75305e-10,     Score=155

Ontologies

KEGG
101738112    K21411 ankyrin repeat and LEM domain-containing protein 1 | (RefSeq) ankyrin repeat and LEM domain-c
GO
GO:0004519   GO:0005515   GO:0005975   GO:0003824   GO:0008152   GO:0005216   GO:0006811   GO:0016020   GO:0043564   GO:0006418  
PANTHER
PTHR46427  

Topology

Length:
661
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.59469
Exp number, first 60 AAs:
0.5157
Total prob of N-in:
0.02694
outside
1  -  661
 
 

Population Genetic Test Statistics

Pi
173.93626
Theta
142.245919
Tajima's D
0.701962
CLR
0.508459
CSRT
0.577971101444928
Interpretation
Uncertain
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