SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11640
Pre Gene Modal
BGIBMGA004005
Annotation
AF461149_1_transposase_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.941
 

Sequence

CDS
ATGAAATTCTTCCTGTCCTTCGCTGCCGTGGTGGCCGTTGCTGTCGCCGGCCCTACTAAGGGCCTGGTGAGTCCCGGCGTTGCCGGACCTGCTCCCATCATCGACGACTTTGTACCTATCGCTGTCGGACCTGCCATCATAGATGAGTTCGAGCCCATTTCCGTCGGACCTGCCATTGTCAACGAATTCGAACCTATCTCCGTTGGGCCTGCCATCGTCGACGAGTTCGTACCTATCTCCGTTGGACCCGCTATCGTAGACAACCCTCCTCTTGCCCCCGTTGCTGACAGCACTCCTCTCGTGCAAATCATTTTGAACATCAACCAGGCTAGCTCTGCCCCTATTGTCCCCGGACCCGGTGTCGATGCCATTATCCCTGAGCCCGTGATTGTCGTTGACGAAGCCGAAATCGTTGCTGAGCCCGTGATTGTTGTCGATGGCCCCGTCCCCGAGCCTGTCCAGGTTGCTGACATTACTCCCGTTGCTCCCAAGCCAGCACTGGGTATTCCAACAAGATCCGGGTCAGCTCATAGAGCGAAGAGCACACAAGACTGGCTGGCGGCGCGTGAAATCGACTTCATCCGGCACGAAGACTGGCCCTCCTCCAGTCCAGATTTGAATCCGTTAGATTACAAGATATGGCAACACTTGGAGGAAAAGGCGTGCTCAAAGCCTCATCCCAATTTGGAGTCACTCAAGACATCCTTGATTAAGGCAGCCGCCGATATTGACATGGACCTCGTTCGTGCTGCGATAGACGACTGGCCGCGCAGATTGAAGGCCTGTATTCAAAATCACGGAGGTCATTTTGAATAA
Protein
MKFFLSFAAVVAVAVAGPTKGLVSPGVAGPAPIIDDFVPIAVGPAIIDEFEPISVGPAIVNEFEPISVGPAIVDEFVPISVGPAIVDNPPLAPVADSTPLVQIILNINQASSAPIVPGPGVDAIIPEPVIVVDEAEIVAEPVIVVDGPVPEPVQVADITPVAPKPALGIPTRSGSAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGHFE

Summary

ProteinModelPortal
PDB
5CR4     E-value=0.000113676,     Score=106

Ontologies

GO

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.992222
 
 
Length:
271
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.87656
Exp number, first 60 AAs:
1.87656
Total prob of N-in:
0.08800
outside
1  -  271
 
 

Population Genetic Test Statistics

Pi
23.13574
Theta
208.551438
Tajima's D
-0.429382
CLR
0.348212
CSRT
0.257837108144593
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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