Silkworm Genome Informatics Database

Gene

KWMTBOMO11625

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr19(-):10210439-10214282 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.049 Mitochondrial Reliability : 1.131 Nuclear Reliability : 1.011 PlasmaMembrane Reliability : 1.127

CDS

ATGGCGTCATTACAAGAAAGTCAAATGGCAGCATTCGAACGCCTACTCGACCGAGTTTTTGAGCATAAAACTCAACTCGAATCATCAGCAACACCGACGTCGGAGCCGACATCGCCGCCTTCCTCGACGCCCGCTCACCATTCTGGGAACTTCGCGTCATGCACGGCGTGGTTCAGCGGAGCGCCCGGCGACTCACTCGACGGTTTCCTTGACGCGGTCGAATCATACAAAGATTGTGCTGACGTAGGACACGCCATCGCGTTACGAGGACTCTCGATGTTACTAAACGGAAATGCAGCCATGTGGTGGCAAGGCGTTAAAGCTAGCATCACTTCCTGGGACGACGCTTTATCATCGTTACGAAGCGCTTTCGGTGATTGCAGACCGCCCCATCGAGTCTACTTAGAGCTCTTCAAAATGTCGCAAGGACAAAGAGAGAAGACGGAGATCTTCGTTGCCAGAGCACGAGCCCTGCTAGCTCGACTCCCACCTGGTGACCTTAGTGAGAAAGTTCAAATTGATATGCTTTACGGCCTTCTACACCGTCGTGTTCGTAAAAGATTAAGAAGAGACGAAATAACTTCATACGACACGTTATTAAAGAAAACGCGCCATATCGAGGACTCCATCTACGAGACCAGTCCGCCTGAATTTATTCATCATCCTCAGCGAGCGACGCCACTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCTGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGATGCTCAAAATAATGAAACTTTGCTTGGCATGGATTTTTTGGTGGCGGCAGGTATTGTGCTTGACTTTGCTTCATCCACTTGGCATTTTTCGGGAAAACGGGTTACCTATCCAATTGAATATGAGTGCCCTAAGCCATGCATGTTTGCTTCTACTGCTGACTTCCTGCGTGATGATAAGGGTTCTATGCTTGGCTCCGATGAACGGCAGCAGCTATCACATTTATTGCAGGAGAATGGAGACATCTTTAGGGTGGGGGGAGCCCCAACCCTTTACGCCGAGCACCACATTGATACCGGTGATCATCCGCCTATATCGGTACCGCCGTATAGGCTCACTCCTGTGCTTCAACAGCGAGGAGAGGTTCTCGCAATCGATTTGTTCGGGCCACTGCCAGAAGGAGAGCAGGGGGAGCGATGGGTACTCCTGGTAGAGGATGTAGCTACAAGATGGGTAGAACTCTACGCACTTGTTGATGCCACCGCCGTGGCTTGCTCCCGAGTCCTACTGGAAGAGTATTTCCTTCGTTATGGCTTGCTTATGCGTCTAGGGGTGTAA

Protein

MASLQESQMAAFERLLDRVFEHKTQLESSATPTSEPTSPPSSTPAHHSGNFASCTAWFSGAPGDSLDGFLDAVESYKDCADVGHAIALRGLSMLLNGNAAMWWQGVKASITSWDDALSSLRSAFGDCRPPHRVYLELFKMSQGQREKTEIFVARARALLARLPPGDLSEKVQIDMLYGLLHRRVRKRLRRDEITSYDTLLKKTRHIEDSIYETSPPEFIHHPQRATPLCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSDAQNNETLLGMDFLVAAGIVLDFASSTWHFSGKRVTYPIEYECPKPCMFASTADFLRDDKGSMLGSDERQQLSHLLQENGDIFRVGGAPTLYAEHHIDTGDHPPISVPPYRLTPVLQQRGEVLAIDLFGPLPEGEQGERWVLLVEDVATRWVELYALVDATAVACSRVLLEEYFLRYGLLMRLGV

Uniprot

A0A0L7KWD2

Pubmed

26227816

EMBL

JTDY01004939 KOB67577.1

Proteomes

UP000037510

Pfam

PF00077 RVP

Interpro

IPR018061   Retropepsins        + More
IPR021109   Peptidase_aspartic_dom_sf
IPR001878   Znf_CCHC

SUPFAM

SSF50630 SSF50630

Gene 3D

2.40.70.10

ProteinModelPortal

A0A0L7KWD2

KEGG

101738870 no KO assigned | (RefSeq) uncharacterized LOC101738870

GO

GO:0003676 GO:0008270 GO:0005840 GO:0006412 GO:0003684 GO:0005634 GO:0042162 GO:0043564 GO:0006418 GO:0003824

Length:

633

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.14932

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00195

outside

1 - 633

Pi

224.111273

Theta

164.975726

Tajima's D

1.183378

CLR

24.852029

CSRT

0.710914454277286

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics