SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11618
Annotation
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.328 Nuclear   Reliability : 1.598
 

Sequence

CDS
ATGACAGTTAAAAAAAGGAAAAGGGTTTTGTCGGCGATGCCCCATTCCACATTTAATGTGGATTTCAGCAATGTAAGGGGCCTACATAGTAACCTCGACGCCGTACACCACCATCTTGAGACGGCGCAGCCTGCCCTCCTTTTTCTGACGGAGACACAGATATCTGCTCCGGATGACACTTCGTACCTTGAATACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGTGTATTCGTCCGGGCTGATGTCTGTTGTCGCCGTCTACGAAGCCTCGAACAACGGGACCTGTCCCTCTTGTGGCTGCGCGTAGATCACGGGGGTTGTACCCGAGTCTACGCGTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTTCAGCTCTGATAGAGCATGTGCAAGAGGGGACTAACTGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGATTTTAACGCTCACCACCAAGAGTGGTTGGGGTCCAGAACCCCTGACCTCCCGGGTCGGGCTGCCTACGATTTCGCCCTGGCCTACGGCTTCTCCCAGCTGGTGACACAGCCCACCCGTGTCCCAGATATTGAGGGGCACGAGCCCTCTCTGTTGGACCTTCTGCTGACCACCGATCCGGCCGGATACAGTGTGGTGGTCGACGCTCCACTTGGATCGTCTGATCACTGCCTTATCCGTGCTGCGGTACCGATCTCTCGTCCTGGTCGTCGAATGACGACCGGGTATCGAAGAGTTTGGCGGTATATGTCAGCAGATTGGGATGGGTTGCGTGAATTTTACGCATCCTACCCATGGGGGCGGCTCTGCTTTTCCTCTGGTGATCCTGACGTCTGTGCGGACCGACTTAAAAACGTGGTGCTTCGGGGGATGGAACTGTTCATTCCTTCTTCCGAGGTGCCCGTCGGGGGTCGCAGTGGACCCTGGTATAACAATGCCAGTCGGGACGCTGCACGCCTCAAGCGGTCCGCATACGCGGCATGGAATGATGCCAGGAGACGCCAGGATCCTAATACCTCAGAGGAAAGGCGGAAATTTAACGCCACTTCTAGGTCCTATAAGAGGGCTATTGCCAGGGCGAAGTCGGAGCACGTTGCCAGAATTGGCGAGCGACTGAAGAGCTATCCCGCCGGGAGCCGTGCTTTCTGGTCGCTCGCTAAGGCTGCAGAAGGTAACTTCTGCAGGTCTAGTCTCCCACCACTACGCAAGTCTGATGACAGTCTGGCCCATAGTGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACCACCGAACATCCCCCGGGTTCCGTCTTCATGGAAGAACGCCCACGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTATAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATTATAAATATACAACTCCTGAAGTATCTTGAAGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTGTCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATAGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGAAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTCTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCAGTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCTCTCTGTATTTTATACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCATCGGAGTAGAGTTCATCCGTACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCAACGGTAA
Protein
MTVKKRKRVLSAMPHSTFNVDFSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRSLEQRDLSLLWLRVDHGGCTRVYACLYRSHSSDAGSALIEHVQEGTNCVLEQYPSAEVVVLGDFNAHHQEWLGSRTPDLPGRAAYDFALAYGFSQLVTQPTRVPDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPISRPGRRMTTGYRRVWRYMSADWDGLREFYASYPWGRLCFSSGDPDVCADRLKNVVLRGMELFIPSSEVPVGGRSGPWYNNASRDAARLKRSAYAAWNDARRRQDPNTSEERRKFNATSRSYKRAIARAKSEHVARIGERLKSYPAGSRAFWSLAKAAEGNFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATPPNIPRVPSSWKNAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDSMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPSLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGQR

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00002   7tm_2
PF00078   RVT_1
PF01585   G-patch
PF04939   RRS1
PF02460   Patched
PF00096   zf-C2H2
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000832   GPCR_2_secretin-like       
IPR005135   Endo/exonuclease/phosphatase       
IPR017981   GPCR_2-like       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR007023   Ribosom_reg       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF57667   SSF57667       
Gene 3D
PDB
6AR3     E-value=2.90564e-05,     Score=117

Ontologies

Topology

Length:
925
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00575
Exp number, first 60 AAs:
0.00021
Total prob of N-in:
0.00028
outside
1  -  925
 
 

Population Genetic Test Statistics

Pi
136.599179
Theta
19.212525
Tajima's D
0
CLR
0.736023
CSRT
0.371731413429329
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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