Silkworm Genome Informatics Database

Gene

KWMTBOMO11618

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr19(-):10071411-10074538 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.328 Nuclear Reliability : 1.598

CDS

ATGACAGTTAAAAAAAGGAAAAGGGTTTTGTCGGCGATGCCCCATTCCACATTTAATGTGGATTTCAGCAATGTAAGGGGCCTACATAGTAACCTCGACGCCGTACACCACCATCTTGAGACGGCGCAGCCTGCCCTCCTTTTTCTGACGGAGACACAGATATCTGCTCCGGATGACACTTCGTACCTTGAATACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGTGTATTCGTCCGGGCTGATGTCTGTTGTCGCCGTCTACGAAGCCTCGAACAACGGGACCTGTCCCTCTTGTGGCTGCGCGTAGATCACGGGGGTTGTACCCGAGTCTACGCGTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTTCAGCTCTGATAGAGCATGTGCAAGAGGGGACTAACTGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGATTTTAACGCTCACCACCAAGAGTGGTTGGGGTCCAGAACCCCTGACCTCCCGGGTCGGGCTGCCTACGATTTCGCCCTGGCCTACGGCTTCTCCCAGCTGGTGACACAGCCCACCCGTGTCCCAGATATTGAGGGGCACGAGCCCTCTCTGTTGGACCTTCTGCTGACCACCGATCCGGCCGGATACAGTGTGGTGGTCGACGCTCCACTTGGATCGTCTGATCACTGCCTTATCCGTGCTGCGGTACCGATCTCTCGTCCTGGTCGTCGAATGACGACCGGGTATCGAAGAGTTTGGCGGTATATGTCAGCAGATTGGGATGGGTTGCGTGAATTTTACGCATCCTACCCATGGGGGCGGCTCTGCTTTTCCTCTGGTGATCCTGACGTCTGTGCGGACCGACTTAAAAACGTGGTGCTTCGGGGGATGGAACTGTTCATTCCTTCTTCCGAGGTGCCCGTCGGGGGTCGCAGTGGACCCTGGTATAACAATGCCAGTCGGGACGCTGCACGCCTCAAGCGGTCCGCATACGCGGCATGGAATGATGCCAGGAGACGCCAGGATCCTAATACCTCAGAGGAAAGGCGGAAATTTAACGCCACTTCTAGGTCCTATAAGAGGGCTATTGCCAGGGCGAAGTCGGAGCACGTTGCCAGAATTGGCGAGCGACTGAAGAGCTATCCCGCCGGGAGCCGTGCTTTCTGGTCGCTCGCTAAGGCTGCAGAAGGTAACTTCTGCAGGTCTAGTCTCCCACCACTACGCAAGTCTGATGACAGTCTGGCCCATAGTGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACCACCGAACATCCCCCGGGTTCCGTCTTCATGGAAGAACGCCCACGTCCACCCTATCCCCAAGAAGGGTGACCGGTCGGACCCATCGAGCTATAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATTATAAATATACAACTCCTGAAGTATCTTGAAGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTGTCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATAGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGAAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTCTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCAGTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCTCTCTGTATTTTATACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCATCGGAGTAGAGTTCATCCGTACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCAACGGTAA

Protein

MTVKKRKRVLSAMPHSTFNVDFSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRSLEQRDLSLLWLRVDHGGCTRVYACLYRSHSSDAGSALIEHVQEGTNCVLEQYPSAEVVVLGDFNAHHQEWLGSRTPDLPGRAAYDFALAYGFSQLVTQPTRVPDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPISRPGRRMTTGYRRVWRYMSADWDGLREFYASYPWGRLCFSSGDPDVCADRLKNVVLRGMELFIPSSEVPVGGRSGPWYNNASRDAARLKRSAYAAWNDARRRQDPNTSEERRKFNATSRSYKRAIARAKSEHVARIGERLKSYPAGSRAFWSLAKAAEGNFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATPPNIPRVPSSWKNAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDSMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPSLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGQR

Uniprot

A0A3S2M451 A0A3S2LQP1 A0A3S2NTH0 A0A3D5S1K1 T2M4I6 A0A0P4VVV8 + More
A0A0P4VPK5 A0A0P4VX79 W4XMI9

Pubmed

30148503 24065732

EMBL

RSAL01000041 RVE50934.1 RSAL01000422 RVE41792.1 RSAL01000090 RVE48098.1 + More
DPOC01000269 HCX22453.1 HAAD01000593 CDG66825.1 GDRN01111277 JAI56804.1 GDRN01111278 JAI56803.1 GDRN01111326 JAI56798.1 AAGJ04112043

Proteomes

UP000283053 UP000007110

Pfam

PF14529   Exo_endo_phos_2        + More
PF00002   7tm_2
PF00078   RVT_1
PF01585   G-patch
PF04939   RRS1
PF02460   Patched
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf
IPR000832   GPCR_2_secretin-like
IPR005135   Endo/exonuclease/phosphatase
IPR017981   GPCR_2-like
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034653   SPF45_RRM
IPR003954   RRM_dom_euk
IPR000467   G_patch_dom
IPR040052   RBM17
IPR035979   RBD_domain_sf
IPR007023   Ribosom_reg
IPR030223   Dispatched
IPR003392   Ptc/Disp
IPR000731   SSD
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928
SSF57667   SSF57667

Gene 3D

3.60.10.10 3.30.70.330

CDD

cd12647 RRM_UHM_SPF45

ProteinModelPortal

A0A3S2M451 A0A3S2LQP1 A0A3S2NTH0 A0A3D5S1K1 T2M4I6 A0A0P4VVV8 + More
A0A0P4VPK5 A0A0P4VX79 W4XMI9

PDB

6AR3 E-value=2.90564e-05, Score=117

KEGG

105842661 no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0016021 GO:0003723 GO:0003676

PANTHER

PTHR13288 PTHR17602 PTHR45951:SF3

Length:

925

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00575

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.00028

outside

1 - 925

Pi

136.599179

Theta

19.212525

Tajima's D

0

CLR

0.736023

CSRT

0.371731413429329

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree