Gene

KWMTBOMO11616  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004010

Annotation

PREDICTED:_sorting_nexin-2_[Bombyx_mori]

Location

Bomo_Chr19(-):10043388-10054498      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.846 Nuclear   Reliability : 1.649

CDS

ATGTCGGCGGGCCCAGATACTCCGCCATTTAGCACCGTTGACATCAACAATGATAGCCGAGATGACGAGGATATTTTTGCGTCCGCTGTACAGGAAGTCAGTCTGGATCCAGAAGTGAATGGAGCTCGTGAGGGTCTGGAGAAAGTTTCCATCGATGACACTCCAGCCTCAATAAGTACCTCTCTCAACAGTCCAGTTATGGAAGAGATTGCCACAGAACGTTCAAATAATATCATAATAACGGTAACGGAACCACAAAAAATTGGAGAAGGCATGAGTTCGTACGTCGCGTATCGAGTATTCACCAAAACAAACATGCCGATATTTAGTAAGCACGAATTCGCTGTGCTCAGACGTTTCAGTGACTTCTTGGGCTTACACGAAAAGCTCACTGAGAAATATCTGCGCTCCGGAAGGATAATACCACCTGCACCTGAAAAAAGCATAGTTGGCACAACGAAACTAAAGATGACATCGACCCCTTCAACGGAGAACGTGAATGGAAGCGTATCGAGCGCGGGGGTGCAGTCTCAGTTCGTGGAACGTCGGCGGGCCGCTCTAGAGAGGTTCCTTAATCGTGTAGCCCAGCACCCGGTCTTGAGCATCGACCCTGATTTTAGAGAATTCCTCGAGTCAGGAATGGACCTACCGAAAGCCACAAGTACATCGGCGTTGAGTGGAGCGGGAATGTTACGTCTCTTCAATAAAGTCGGTGAGACCGTCAACAAGATCACTTATAGAATGGACGAGGCTGATCCGTGGTTCGAGGAGCGCGCGCTTCGCGTGGAGACGCTGGAGGCGTGCCTGCGGCGGCTCGGCGGCGCGTGCGAGGCGCTGGCGGGCGAGCGACGCGAGCTGGCCGTGCGCACGCACGACGCGGCGCGCGCGCACGCCTCACTGTCCGGCGCCGACCCGCACGCGCCCCTCTCCCGCGCGCTCTCCCACGTCGCCGACCTGCACGAGAAGATTGAAAACTTGAGACTGGAACAATCAAACACGGACTTCTTCATTCTGTCTGAACACATCAAAGATTACCTCGGGCTTATCGGATCAATCAAAGACGTATTCCATGAACGAGTAAAGGTGTTCCAAAACTGGCAACACGCTCAAATGCAGCTCACTAAAAGGCGCGAGAACAAAGCCAAGGCTGAACTCTCGAACCGACCGGATAAAGCTGAACAAGCAGCCAATGAAATAGTTGAGTGGGAAACAAAAGTCGAACGCAATCAACAAGAGTTCGACTCGATATCGCGCGTCATCAAGAAGGAAATCGAGCGATGGGAGGAGATCCGGGTCGATGAGTTGCGGGCGACGCTGCTGCACTACCTCGAGGAACACATGAAGCATCAAGCTCAGGCGATTAGATATTGGGACGCGTTCCTTCCCGAAGCGCGCGCCATCAAATGA

Protein

MSAGPDTPPFSTVDINNDSRDDEDIFASAVQEVSLDPEVNGAREGLEKVSIDDTPASISTSLNSPVMEEIATERSNNIIITVTEPQKIGEGMSSYVAYRVFTKTNMPIFSKHEFAVLRRFSDFLGLHEKLTEKYLRSGRIIPPAPEKSIVGTTKLKMTSTPSTENVNGSVSSAGVQSQFVERRRAALERFLNRVAQHPVLSIDPDFREFLESGMDLPKATSTSALSGAGMLRLFNKVGETVNKITYRMDEADPWFEERALRVETLEACLRRLGGACEALAGERRELAVRTHDAARAHASLSGADPHAPLSRALSHVADLHEKIENLRLEQSNTDFFILSEHIKDYLGLIGSIKDVFHERVKVFQNWQHAQMQLTKRRENKAKAELSNRPDKAEQAANEIVEWETKVERNQQEFDSISRVIKKEIERWEEIRVDELRATLLHYLEEHMKHQAQAIRYWDAFLPEARAIK

Uniprot

H9J3C3   A0A3S2LUY4   A0A194QCX7   A0A2H1VNB2   A0A0N0PBW7   A0A212EH05   + More
A0A067RBF7   D6WRQ8   V5GSX9   A0A2J7QJQ0   A0A1W4XJJ1   A0A1Y1LWZ1   A0A195D304   A0A2A3EMS4   A0A195E4B1   A0A195FJ95   A0A182WW28   A0A0J7L9J4   A0A0M8ZUA4   A0A182V2Y7   A0A182L6C4   A0A151X240   Q7PVK3   A0A154P3Z7   E9IV11   E2AJW8   A0A182TZW5   E2B387   A0A0K8TMI1   A0A182PE78   N6T3D5   A0A2P8YDG7   F4W6H6   A0A182KBQ1   A0A182QGB9   A0A084WH21   A0A195AVU3   A0A158P283   A0A1Q3G1D2   A0A182JKB1   A0A182MYX3   A0A2M4BMP9   A0A2M3Z559   A0A2M4BNK6   U5ERM9   W5J9F1   A0A1Q3G1D0   A0A232EVS2   A0A1Q3G1B4   A0A2M4AKU6   A0A2M4AKQ0   A0A182F3J3   A0A088AL66   A0A1L8DV84   A0A1S4FB77   A0A0C9QF80   A0A026WWY6   Q179F0   A0A182MW50   A0A1B6LMV1   A0A182T568   A0A182VUF8   B4KJL4   B4LSG2   A0A0T6B186   A0A182HGI3   B4JBU4   A0A224XMN1   A0A182RIQ3   A0A182YRE9   T1ID17   B3MVG7   B3N320   Q179E9   B4G861   A0A0C9QU20   A0A034WRH0   A0A1I8MLZ7   B4N106   Q9VQQ6   A0A0P4W091   A0A0J9TEQ4   A0A1I8PE38   A0A1W4V724   B4NXW5   A0A0K8U4J8   A0A0A1WJQ5   A0A2H8TDV7   Q8MS29   B4INK0   A0A1I8PDZ4   Q29N71   A0A2S2RAL3   A0A0M4E0X2   A0A1J1IRC0   W8BJF6   A0A1D2N4U2   J9JMW6   A0A1A9WKK7   A0A0L0CMJ6  

Pubmed

19121390    26354079    22118469    24845553    18362917    19820115    + More
28004739    20966253    12364791    14747013    17210077    21282665    20798317    26369729    23537049    29403074    21719571    24438588    21347285    20920257    23761445    28648823    24508170    30249741    17510324    17994087    25244985    25348373    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    27129103    22936249    17550304    25830018    15632085    24495485    27289101    26108605   

EMBL

BABH01021635    BABH01021636    RSAL01000182    RVE44899.1    KQ459185    KPJ03274.1    + More
ODYU01003470    SOQ42303.1    KQ460772    KPJ12494.1    AGBW02014995    OWR40754.1    KK852809    KDR15997.1    KQ971354    EFA05966.1    GALX01001177    JAB67289.1    NEVH01013549    PNF28821.1    GEZM01044892    GEZM01044891    GEZM01044890    GEZM01044889    JAV78063.1    KQ976885    KYN07277.1    KZ288209    PBC32990.1    KQ979657    KYN19921.1    KQ981523    KYN40332.1    LBMM01000122    KMR04851.1    KQ435843    KOX71285.1    KQ982580    KYQ54479.1    AAAB01008984    EAA14938.3    KQ434809    KZC06665.1    GL766116    EFZ15557.1    GL440100    EFN66284.1    GL445305    EFN89869.1    GDAI01002026    JAI15577.1    APGK01045628    KB741037    KB632319    ENN74654.1    ERL92300.1    PYGN01000681    PSN42299.1    GL887707    EGI70311.1    AXCN02000815    ATLV01023778    KE525346    KFB49515.1    KQ976731    KYM76182.1    ADTU01007023    GFDL01001445    JAV33600.1    GGFJ01005218    MBW54359.1    GGFM01002906    MBW23657.1    GGFJ01005217    MBW54358.1    GANO01003672    JAB56199.1    ADMH02001788    ETN61087.1    GFDL01001442    JAV33603.1    NNAY01001961    OXU22445.1    GFDL01001450    JAV33595.1    GGFK01008080    MBW41401.1    GGFK01008013    MBW41334.1    GFDF01003748    JAV10336.1    GBYB01000837    GBYB01002049    JAG70604.1    JAG71816.1    KK107077    QOIP01000010    EZA60562.1    RLU17753.1    CH477353    EAT42856.1    AXCM01001281    GEBQ01014906    JAT25071.1    CH933807    EDW11459.1    CH940649    EDW64784.2    LJIG01016272    KRT81098.1    APCN01004236    CH916368    EDW04047.1    GFTR01006584    JAW09842.1    ACPB03002827    CH902624    EDV33232.1    CH954177    EDV57619.1    EAT42857.1    CH479180    EDW28541.1    GBYB01007234    JAG77001.1    GAKP01001748    JAC57204.1    CH963920    EDW78168.1    AE014134    BT133048    AAF51109.1    AEX93134.1    GDKW01000325    JAI56270.1    CM002910    KMY87890.1    CM000157    EDW87536.1    GDHF01030873    JAI21441.1    GBXI01015552    JAC98739.1    GFXV01000482    MBW12287.1    AY119129    AAM50989.1    CH676463    EDW44609.1    CH379060    EAL33472.1    GGMS01017894    MBY87097.1    CP012523    ALC38891.1    CVRI01000055    CRL01630.1    GAMC01005140    GAMC01005138    JAC01416.1    LJIJ01000217    ODN00297.1    ABLF02020714    ABLF02020715    ABLF02046332    JRES01000186    KNC33501.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000053240    UP000007151    UP000027135    + More
UP000007266    UP000235965    UP000192223    UP000078542    UP000242457    UP000078492    UP000078541    UP000076407    UP000036403    UP000053105    UP000075903    UP000075882    UP000075809    UP000007062    UP000076502    UP000000311    UP000075902    UP000008237    UP000075885    UP000019118    UP000030742    UP000245037    UP000007755    UP000075881    UP000075886    UP000030765    UP000078540    UP000005205    UP000075880    UP000075884    UP000000673    UP000215335    UP000069272    UP000005203    UP000053097    UP000279307    UP000008820    UP000075883    UP000075901    UP000075920    UP000009192    UP000008792    UP000075840    UP000001070    UP000075900    UP000076408    UP000015103    UP000007801    UP000008711    UP000008744    UP000095301    UP000007798    UP000000803    UP000095300    UP000192221    UP000002282    UP000001292    UP000001819    UP000092553    UP000183832    UP000094527    UP000007819    UP000091820    UP000037069   

PRIDE

H9J3C3    Q9VQQ6    Q8MS29   

Pfam

PF00787   PX        + More
PF09325   Vps5

Interpro

IPR027267   AH/BAR_dom_sf        + More
IPR036871   PX_dom_sf       
IPR001683   Phox       
IPR015404   Vps5_C       
IPR028660   SNX1       
IPR039358   Sorting_nexin-like       
IPR028653   SNX2       

SUPFAM

SSF103657   SSF103657        + More
SSF64268   SSF64268       

Gene 3D

1.20.1270.60     3.30.1520.10    

ProteinModelPortal

H9J3C3   A0A3S2LUY4   A0A194QCX7   A0A2H1VNB2   A0A0N0PBW7   A0A212EH05   + More
A0A067RBF7   D6WRQ8   V5GSX9   A0A2J7QJQ0   A0A1W4XJJ1   A0A1Y1LWZ1   A0A195D304   A0A2A3EMS4   A0A195E4B1   A0A195FJ95   A0A182WW28   A0A0J7L9J4   A0A0M8ZUA4   A0A182V2Y7   A0A182L6C4   A0A151X240   Q7PVK3   A0A154P3Z7   E9IV11   E2AJW8   A0A182TZW5   E2B387   A0A0K8TMI1   A0A182PE78   N6T3D5   A0A2P8YDG7   F4W6H6   A0A182KBQ1   A0A182QGB9   A0A084WH21   A0A195AVU3   A0A158P283   A0A1Q3G1D2   A0A182JKB1   A0A182MYX3   A0A2M4BMP9   A0A2M3Z559   A0A2M4BNK6   U5ERM9   W5J9F1   A0A1Q3G1D0   A0A232EVS2   A0A1Q3G1B4   A0A2M4AKU6   A0A2M4AKQ0   A0A182F3J3   A0A088AL66   A0A1L8DV84   A0A1S4FB77   A0A0C9QF80   A0A026WWY6   Q179F0   A0A182MW50   A0A1B6LMV1   A0A182T568   A0A182VUF8   B4KJL4   B4LSG2   A0A0T6B186   A0A182HGI3   B4JBU4   A0A224XMN1   A0A182RIQ3   A0A182YRE9   T1ID17   B3MVG7   B3N320   Q179E9   B4G861   A0A0C9QU20   A0A034WRH0   A0A1I8MLZ7   B4N106   Q9VQQ6   A0A0P4W091   A0A0J9TEQ4   A0A1I8PE38   A0A1W4V724   B4NXW5   A0A0K8U4J8   A0A0A1WJQ5   A0A2H8TDV7   Q8MS29   B4INK0   A0A1I8PDZ4   Q29N71   A0A2S2RAL3   A0A0M4E0X2   A0A1J1IRC0   W8BJF6   A0A1D2N4U2   J9JMW6   A0A1A9WKK7   A0A0L0CMJ6  

PDB

4FZS     E-value=1.44044e-41,     Score=427

KEGG

101738157    K17917 sorting nexin-1/2 | (RefSeq) sorting nexin-2

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0005829   GO:0042147   GO:0035091   GO:0006886   GO:0030904   GO:0006897   GO:0005768   GO:0010008   GO:0034498   GO:0030905   GO:0032266   GO:0005840   GO:0006412   GO:0003684   GO:0005634   GO:0042162   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR10555:SF129   PTHR10555   PTHR10555:SF31  

Length:

468

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00058

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00055

outside

1  -  468

 

 

Pi

18.691413

Theta

21.81529

Tajima's D

-0.792974

CLR

1.176653

CSRT

0.176291185440728

Interpretation

Uncertain