Gene

KWMTBOMO11614  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004112

Annotation

PREDICTED:_39S_ribosomal_protein_L13?_mitochondrial_[Papilio_machaon]

Location

Bomo_Chr19(+):10028909-10032267      View in EpiBrowser

Full name

39S ribosomal protein L13, mitochondrial      

Location in the cell

Mitochondrial   Reliability : 3.052

CDS

ATGTCAGCAGCGAAACGAGTACAGCAATGGGCAACATTTGCTCGTAGTTGGCACATATTCGACTGCAAATGGCAAGATCCTTATGAATCCGCTCACGTTATAAAAAAATATTTGATGGGCATGCACAAACCCATATACCATCCTATGAACGATTGTGGAGATGTTGTTGTCTGTATAAATAGTAGAGAGATAGCTCTTCGAGGCGACGAGTGGAGGAAACGTGCTTATTTCCACCACACTGGATACCCTGGAGGTGCTTCGTGGACTTTAGCATGGGAGTTACATAACAAGGATCCAACCATGATCATAAAAAAAGCAGTGTACAGAGCAATGACTGGAAACCTTCAGAGGCGTCATACAATGCAGCGTCTTTTTATATACCCTGGAGAGAATGTACCGGAAGACGTTTTGCAAAATGTTACTAATCAAATTAGACAAATACGTTACGTACCGAAAAGACTAGACCACATACCCGAAGAAGAAGTGAAAAATTATCCCAAAGTCATGGAATACCCAGAAGATTTTGTTGTTAAATAA

Protein

MSAAKRVQQWATFARSWHIFDCKWQDPYESAHVIKKYLMGMHKPIYHPMNDCGDVVVCINSREIALRGDEWRKRAYFHHTGYPGGASWTLAWELHNKDPTMIIKKAVYRAMTGNLQRRHTMQRLFIYPGENVPEDVLQNVTNQIRQIRYVPKRLDHIPEEEVKNYPKVMEYPEDFVVK

Subunit

Component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins (By similarity).

Similarity

Belongs to the universal ribosomal protein uL13 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  39S ribosomal protein L13, mitochondrial

Uniprot

H9J3M5   A0A2A4J110   A0A0N0PBZ0   A0A194QIJ7   A0A2H1VFC0   A0A182QKX5   + More
A0A0P8Y5U0   A0A0Q9W9H4   A0A182PTD8   A0A182RR81   A0A1S4H2D3   A0A182V6J5   A0A182XJK2   A0A182KTK3   A0A182HRI0   A0A2M4C174   A0A182YMS5   A0A182JTT1   A0A2M4C136   W5JSH0   A0A2M3Z7N2   A0A2M4AVX9   A0A0R3NSN0   B4G8J0   A0A1Q3FE64   A0A182U7I3   A0A1A9VJC2   A0A1W4V9D9   A0A182NAS6   B0WVS2   A0A182F3W1   A0A1L8DRT2   A0A182W906   B4JB54   D3TRV4   B4I5M1   B4Q8Z6   A0A139WF38   A0A0R1DPC5   A0A0Q5VUJ7   A0A182M460   A0A023EHV2   Q9VJ38   A0A0Q9X221   A0A0Q9X3E8   A0A0K8W6L9   J3JY52   W8C7W6   A0A0A1X9F2   Q17ET7   A0A1A9Y5N8   A0A240PLE7   Q7Q191   A0A1W4WU47   E2AXI1   A0A0L0BZT8   A0A1L8ED45   A0A1Y1MJK0   A0A1L8EDC2   A0A1B0DH47   A0A067RAN4   A0A0M5J9G6   A0A1I8MKJ8   A0A1I8Q2N5   A0A0K8TM01   F4WH88   A0A139WF40   A0A023F813   A0A336MAA2   U5EXA1   A0A158NPD5   A0A212EH02   A0A0V0G8W0   E2BL25   A0A224XY42   A0A069DPU1   A0A151X651   A0A0P4VSW7   T1I3E0   A0A0A9WGX2   A0A146L853   A0A2H1VN45   A0A2R7W2U1   A0A088AH49   A0A162SKY8   A0A0P5M9Q6   A0A3L8DYF1   A0A1B6DE18   A0A2A3ET45   A0A2S2P754   A0A026WNY9   A0A2H8TPU4   A0A1B6JBA2   A0A310SJT8   A0A1L8E8I8   A0A1B6F8L4   A0A0M8ZYZ7   A0A1B6LWE2   A0A2S2QT32   A0A0P6BVY1  

Pubmed

19121390    26354079    17994087    12364791    20966253    25244985    + More
20920257    23761445    15632085    20353571    22936249    18362917    19820115    17550304    24945155    10731132    12537572    22516182    23537049    24495485    25830018    17510324    20798317    26108605    28004739    24845553    25315136    26369729    21719571    25474469    21347285    22118469    26334808    27129103    25401762    26823975    30249741    24508170   

EMBL

BABH01021632    BABH01021633    BABH01021634    BABH01021635    NWSH01004210    PCG65358.1    + More
KQ460772    KPJ12491.1    KQ459185    KPJ03276.1    ODYU01002268    SOQ39527.1    AXCN02000660    CH902624    KPU74502.1    CH940649    KRF81411.1    AAAB01008980    APCN01001706    GGFJ01009873    MBW59014.1    GGFJ01009872    MBW59013.1    ADMH02000223    ETN67322.1    GGFM01003764    MBW24515.1    GGFK01011609    MBW44930.1    CH379060    KRT03948.1    CH479180    EDW28670.1    GFDL01009208    JAV25837.1    DS232131    EDS35679.1    GFDF01004886    JAV09198.1    CH916368    EDW03946.1    EZ424156    ADD20432.1    CH480822    EDW55677.1    CM000361    CM002910    EDX05428.1    KMY90892.1    KQ971354    KYB26481.1    CM000158    KRJ99130.1    CH954179    KQS61915.1    AXCM01000771    GAPW01004946    JAC08652.1    AE014134    BT053702    CH963852    KRF98263.1    CH933807    KRG02566.1    GDHF01005481    JAI46833.1    APGK01035291    BT128176    KB740923    KB632333    AEE63137.1    ENN78247.1    ERL92678.1    GAMC01000287    JAC06269.1    GBXI01006721    JAD07571.1    CH477279    EAT45015.1    EAA14080.4    GL443583    EFN61866.1    JRES01001109    KNC25501.1    GFDG01002227    JAV16572.1    GEZM01033892    JAV84066.1    GFDG01002226    JAV16573.1    AJVK01060700    KK852632    KDR19814.1    CP012523    ALC39981.1    GDAI01002219    JAI15384.1    GL888153    EGI66454.1    KYB26479.1    GBBI01001343    JAC17369.1    UFQT01000618    SSX25819.1    GANO01001040    JAB58831.1    ADTU01022391    AGBW02014995    OWR40756.1    GECL01001659    JAP04465.1    GL448902    EFN83603.1    GFTR01002944    JAW13482.1    GBGD01003183    JAC85706.1    KQ982482    KYQ55861.1    GDKW01000900    JAI55695.1    ACPB03010447    GBHO01045181    GBHO01037826    GBRD01001060    GBRD01001059    JAF98422.1    JAG05778.1    JAG64761.1    GDHC01014055    JAQ04574.1    ODYU01003454    SOQ42255.1    KK854251    PTY13738.1    LRGB01000024    KZS21405.1    GDIQ01161341    JAK90384.1    QOIP01000003    RLU24979.1    GEDC01031130    GEDC01026628    GEDC01013402    JAS06168.1    JAS10670.1    JAS23896.1    KZ288189    PBC34684.1    GGMR01012419    MBY25038.1    KK107139    EZA57653.1    GFXV01004116    MBW15921.1    GECU01011349    JAS96357.1    KQ763877    OAD54652.1    GFDG01003719    JAV15080.1    GECZ01023190    JAS46579.1    KQ435794    KOX73980.1    GEBQ01029587    GEBQ01011991    JAT10390.1    JAT27986.1    GGMS01011477    MBY80680.1    GDIP01009899    JAM93816.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000075886    UP000007801    + More
UP000008792    UP000075885    UP000075900    UP000075903    UP000076407    UP000075882    UP000075840    UP000076408    UP000075881    UP000000673    UP000001819    UP000008744    UP000075902    UP000078200    UP000192221    UP000075884    UP000002320    UP000069272    UP000075920    UP000001070    UP000001292    UP000000304    UP000007266    UP000002282    UP000008711    UP000075883    UP000000803    UP000007798    UP000009192    UP000019118    UP000030742    UP000008820    UP000092443    UP000075880    UP000007062    UP000192223    UP000000311    UP000037069    UP000092462    UP000027135    UP000092553    UP000095301    UP000095300    UP000007755    UP000005205    UP000007151    UP000008237    UP000075809    UP000015103    UP000005203    UP000076858    UP000279307    UP000242457    UP000053097    UP000053105   

PRIDE

H9J3M5    Q9VJ38   

Pfam

PF01433   Peptidase_M1        + More
PF09127   Leuk-A4-hydro_C
PF00572   Ribosomal_L13
PF00069   Pkinase
PF09128   RGS-like
PF00595   PDZ
PF07162   B9-C2
PF00130   C1_1
PF17838   PH_16
PF07773   DUF1619
PF00621   RhoGEF

Interpro

IPR034015   M1_LTA4H        + More
IPR001930   Peptidase_M1       
IPR036899   Ribosomal_L13_sf       
IPR015211   Peptidase_M1_C       
IPR027268   Peptidase_M4/M1_CTD_sf       
IPR038502   M1_LTA-4_hydro/amino_C_sf       
IPR016024   ARM-type_fold       
IPR014782   Peptidase_M1_dom       
IPR042097   Aminopeptidase_N-like_N       
IPR005822   Ribosomal_L13       
IPR005823   Ribosomal_L13_bac-type       
IPR017441   Protein_kinase_ATP_BS       
IPR011009   Kinase-like_dom_sf       
IPR008271   Ser/Thr_kinase_AS       
IPR000719   Prot_kinase_dom       
IPR035899   DBL_dom_sf       
IPR041020   PH_16       
IPR001478   PDZ       
IPR010796   B9_dom       
IPR001849   PH_domain       
IPR000219   DH-domain       
IPR016137   RGS       
IPR036305   RGS_sf       
IPR015212   RGS-like_dom       
IPR011677   DUF1619       
IPR036034   PDZ_sf       
IPR011993   PH-like_dom_sf       
IPR002219   PE/DAG-bd       

SUPFAM

SSF52161   SSF52161        + More
SSF48371   SSF48371       
SSF56112   SSF56112       
SSF50156   SSF50156       
SSF48065   SSF48065       
SSF48097   SSF48097       

Gene 3D

1.10.390.10     1.25.40.320     2.60.40.1730     3.90.1180.10     1.20.900.10     2.30.29.30    

CDD

cd09599  M1_LTA4H
cd00392  Ribosomal_L13
cd00160  RhoGEF
cd00029  C1

ProteinModelPortal

H9J3M5   A0A2A4J110   A0A0N0PBZ0   A0A194QIJ7   A0A2H1VFC0   A0A182QKX5   + More
A0A0P8Y5U0   A0A0Q9W9H4   A0A182PTD8   A0A182RR81   A0A1S4H2D3   A0A182V6J5   A0A182XJK2   A0A182KTK3   A0A182HRI0   A0A2M4C174   A0A182YMS5   A0A182JTT1   A0A2M4C136   W5JSH0   A0A2M3Z7N2   A0A2M4AVX9   A0A0R3NSN0   B4G8J0   A0A1Q3FE64   A0A182U7I3   A0A1A9VJC2   A0A1W4V9D9   A0A182NAS6   B0WVS2   A0A182F3W1   A0A1L8DRT2   A0A182W906   B4JB54   D3TRV4   B4I5M1   B4Q8Z6   A0A139WF38   A0A0R1DPC5   A0A0Q5VUJ7   A0A182M460   A0A023EHV2   Q9VJ38   A0A0Q9X221   A0A0Q9X3E8   A0A0K8W6L9   J3JY52   W8C7W6   A0A0A1X9F2   Q17ET7   A0A1A9Y5N8   A0A240PLE7   Q7Q191   A0A1W4WU47   E2AXI1   A0A0L0BZT8   A0A1L8ED45   A0A1Y1MJK0   A0A1L8EDC2   A0A1B0DH47   A0A067RAN4   A0A0M5J9G6   A0A1I8MKJ8   A0A1I8Q2N5   A0A0K8TM01   F4WH88   A0A139WF40   A0A023F813   A0A336MAA2   U5EXA1   A0A158NPD5   A0A212EH02   A0A0V0G8W0   E2BL25   A0A224XY42   A0A069DPU1   A0A151X651   A0A0P4VSW7   T1I3E0   A0A0A9WGX2   A0A146L853   A0A2H1VN45   A0A2R7W2U1   A0A088AH49   A0A162SKY8   A0A0P5M9Q6   A0A3L8DYF1   A0A1B6DE18   A0A2A3ET45   A0A2S2P754   A0A026WNY9   A0A2H8TPU4   A0A1B6JBA2   A0A310SJT8   A0A1L8E8I8   A0A1B6F8L4   A0A0M8ZYZ7   A0A1B6LWE2   A0A2S2QT32   A0A0P6BVY1  

PDB

6GB2     E-value=2.93991e-44,     Score=445

KEGG

101737803    K02871 large subunit ribosomal protein L13 | (RefSeq) 39S ribosomal protein L13, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0008237   GO:0005840   GO:0008270   GO:0004463   GO:0016301   GO:0032543   GO:0005762   GO:0005739   GO:0003729   GO:0017148   GO:0006468   GO:0005737   GO:0005634   GO:0035556   GO:0005524   GO:0004674   GO:0016021   GO:0005089   GO:0046872   GO:0035023   GO:0003684   GO:0042162   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR11545  

Subcellular location

Mitochondrion  

Length:

178

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13907

Exp number, first 60 AAs:

0.0005

Total prob of N-in:

0.39414

outside

1  -  178

 

 

Pi

150.254457

Theta

168.444029

Tajima's D

0.077228

CLR

0.090059

CSRT

0.389230538473076

Interpretation

Possibly Positive selection