SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11611
Pre Gene Modal
BGIBMGA004111
Annotation
PREDICTED:_uncharacterized_protein_LOC101737564_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.018
 

Sequence

CDS
ATGCACGCTAGAGCATTACTGTATTTGGAACGTTTCACACGTCGCTGTTTACCATGTGGCGGTGGATGCTTCTCGAAGTTCGTTGGTTTGCGCTGTGATGATGGCTTAGTACAAGAAAGCGAGGCAGTAAAACGAACCCGGCATCAAATTCGTGCGTTGAAGACTGAAACAGTTGTTCCAGGTGACCAAGATCAGCTATCTGTATTCGCTCATGAAGAATCGTCCGATTTTGCTATCCATATCATACCGGAATGTTCTAGCTTGGAACTATTGAAAAAAGAACGCTCATCTTCGAGGTTTTTAGAAATGAAGAGATTAAAGAGATTGAGAAATAAACAAATGAAGAAGGGAGTCCGTTCGTTCTCGTCGGTCGAAACAAACAACTGTGAATGTTTGACTATTCTGATGACCGTTTACTCTCAGATTATTGATCATTGTAGAGGAGCTGGCGAGTTCAATAAACTATACGAAGCTTACATTGAATACGTTGACATAAACCTCATTAGCTTAAACGTACCGCAGGCTATCAGACTTTTGATCGAAGTTGAGAATTTTGTTCAGCTGAAACCTGGTATTATTTTTATGCCATAG
Protein
MHARALLYLERFTRRCLPCGGGCFSKFVGLRCDDGLVQESEAVKRTRHQIRALKTETVVPGDQDQLSVFAHEESSDFAIHIIPECSSLELLKKERSSSRFLEMKRLKRLRNKQMKKGVRSFSSVETNNCECLTILMTVYSQIIDHCRGAGEFNKLYEAYIEYVDINLISLNVPQAIRLLIEVENFVQLKPGIIFMP

Summary

Similarity
Belongs to the peptidase S1 family.
Pfam
PF00211   Guanylate_cyc        + More
PF00076   RRM_1
PF07744   SPOC
PF13191   AAA_16
PF00766   ETF_alpha
PF01012   ETF
PF15473   PCNP
PF00089   Trypsin
Interpro
IPR001054   A/G_cyclase        + More
IPR029787   Nucleotide_cyclase       
IPR027417   P-loop_NTPase       
IPR010912   SPOC_met       
IPR012921   SPOC_C       
IPR035979   RBD_domain_sf       
IPR016194   SPOC-like_C_dom_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR041664   AAA_16       
IPR014729   Rossmann-like_a/b/a_fold       
IPR014730   ETF_a/b_N       
IPR029035   DHS-like_NAD/FAD-binding_dom       
IPR014731   ETF_asu_C       
IPR018206   ETF_asu_C_CS       
IPR033947   ETF_alpha_N       
IPR029169   PCNP       
IPR018114   TRYPSIN_HIS       
IPR001254   Trypsin_dom       
IPR009003   Peptidase_S1_PA       
IPR001314   Peptidase_S1A       
SUPFAM
SSF55073   SSF55073        + More
SSF52540   SSF52540       
SSF48452   SSF48452       
SSF100939   SSF100939       
SSF54928   SSF54928       
SSF52467   SSF52467       
SSF50494   SSF50494       

Ontologies

Topology

Length:
196
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0184
Exp number, first 60 AAs:
0.00075
Total prob of N-in:
0.04261
outside
1  -  196
 
 

Population Genetic Test Statistics

Pi
221.904011
Theta
160.760931
Tajima's D
0.921538
CLR
0.399242
CSRT
0.63796810159492
Interpretation
Uncertain
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