Gene

KWMTBOMO11607  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004013

Annotation

PREDICTED:_28S_ribosomal_protein_S17?_mitochondrial-like_[Papilio_machaon]

Location

Bomo_Chr19(-):9953320-9959138      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.095

CDS

ATGTCAAGAAATGTCGCTGATGCAGCCAGGAAGTTTCTCTTACTTGGACAATGTGTACCGACTGTTAAACAAAATGCTGCAAAAATTAGAGTAAAGAGGTTAGAATTAGATGAAAACCTTTTAATGTATTTTAGGAAAGAGGAGTTTTACTATTGCCACGATTCAGAGAAAATATGCAAAACTGGAGACATAGTCCTGATCCAAGCGTTACCTGAGAAGCTAACCAAGTTAATAACCCATGAAATAAAAGAAGTCGTTTATCCGTTTGGCGATATAACCGACCCTGTTACAGGCAAGAAAGTTTCTAAAGAGCAATATAAAGAAGATATAGAAAGACAAACTGAATTGTATGGAAGGTTAAAGTCTACATTCAACTACAATAAAGCTCCACCGAGAGGTTGGCAGGATGGCAAAAAAGATTTTACTTCTAAACCAACATACACAAAGTTCCATGTTTTTGATGAAAATGATCCATATGGTATTTGA

Protein

MSRNVADAARKFLLLGQCVPTVKQNAAKIRVKRLELDENLLMYFRKEEFYYCHDSEKICKTGDIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQTELYGRLKSTFNYNKAPPRGWQDGKKDFTSKPTYTKFHVFDENDPYGI

Uniprot

A0A2A4JHP5   A0A2H1VB61   A0A0N1PII5   A0A194QCY8   A0A3S2LT15   H9J3C6   + More
A0A0L7KSX4   A0A212EH12   A0A067QK75   B4NMR7   A0A2J7RKP4   A0A0P8ZQX1   D6WSR4   Q28ZX8   B4GGM6   B3MDN2   B4KNV9   B4PAV9   B4I2E8   B4QBJ5   Q9W199   A0A1W4V029   B4J8C6   B0WCB2   A0A3B0J293   A0A023EH87   W8BWQ0   B4LJU8   A0A182M9B4   A0A2S2NQ44   A0A1I8P5X9   B3NQG4   A0A1B6D0Q3   A0A182N814   A0A0M4EX24   A0A2M3ZAV5   A0A182FCG3   A0A0K8TP83   W5JQP4   A0A2H8U2A3   A0A2M4AXD8   A0A182YFK8   Q1HQG6   A0A1Q3F8L0   A0A182INY2   A0A2M4C2Y8   A0A1L8ECM6   A0A182WAA3   A0A0L0BPP1   A0A182VNP5   A0A182Q7E3   A0A182RTN7   A0A1I8MZ32   A0A182XJ89   Q7Q9P8   A0A182HP73   C4WWC7   A0A182PHD1   A0A0A1XJI9   A0A182T9V8   A0A0P4W3Y2   A0A0K8UT77   R4FPL0   A0A034WME9   T1DSX4   A0A2A3E9J0   A0A0T6BFI8   A0A084W9K9   A0A2S2QA89   N6TJQ0   A0A023F7Z1   A0A088AJ35   A0A1W4XAQ9   A0A1A9X498   A0A2R7W810   A0A1B6GIJ1   A0A1B6LVE5   A0A310SP52   A0A0N0BDP0   A0A069DP04   A0A1L8DRN9   A0A1Y1NHH8   A0A224XZ52   A0A1B6I136   A0A1A9UKZ5   A0A1A9ZTF4   D3TS29   A0A1B0CVC1   A0A336LUZ8   E9J521   F4W820   A0A195BPG0   A0A158NDS3   A0A195EZC1   A0A0J7KT20   E9H909   A0A1L8DRS2   A0A1A9YNH7   A0A151X4J4   A0A026W777  

Pubmed

26354079    19121390    26227816    22118469    24845553    17994087    + More
18362917    19820115    15632085    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24945155    24495485    26369729    20920257    23761445    25244985    17204158    26108605    25315136    12364791    14747013    17210077    25830018    27129103    25348373    24438588    23537049    25474469    26334808    28004739    20353571    21282665    21719571    21347285    21292972    24508170   

EMBL

NWSH01001346    PCG71595.1    ODYU01001611    SOQ38078.1    KQ460772    KPJ12483.1    + More
KQ459185    KPJ03284.1    RSAL01000231    RVE43832.1    BABH01021627    JTDY01006014    KOB66372.1    AGBW02014995    OWR40762.1    KK853253    KDR09312.1    CH964282    EDW85656.1    NEVH01002717    PNF41407.1    CH902619    KPU76863.1    KQ971354    EFA05878.1    CM000071    EAL25484.1    CH479183    EDW35646.1    EDV37495.2    CH933808    EDW09004.1    CM000158    EDW92499.1    CH480820    EDW53943.1    CM000362    CM002911    EDX08513.1    KMY96286.1    AE013599    AY084147    KX532008    AAF47177.1    AAL89885.1    ANY27818.1    CH916367    EDW02285.1    DS231886    EDS43357.1    OUUW01000001    SPP75225.1    GAPW01005389    GAPW01005388    JAC08209.1    GAMC01000825    JAC05731.1    CH940648    EDW61602.1    AXCM01000363    GGMR01006655    MBY19274.1    CH954179    EDV56967.1    GEDC01018016    JAS19282.1    CP012524    ALC42470.1    GGFM01004925    MBW25676.1    GDAI01001647    JAI15956.1    ADMH02000391    ETN66732.1    GFXV01007833    MBW19638.1    GGFK01012051    MBW45372.1    DQ440478    ABF18511.1    GFDL01011141    JAV23904.1    GGFJ01010227    MBW59368.1    GFDG01002365    JAV16434.1    JRES01001567    KNC21933.1    AXCN02000912    AAAB01008900    EAA09413.2    APCN01002922    ABLF02039597    ABLF02039613    AK341990    BAH72197.1    GBXI01002768    JAD11524.1    GDKW01000500    JAI56095.1    GDHF01022422    JAI29892.1    GAHY01000824    JAA76686.1    GAKP01003607    JAC55345.1    GAMD01000025    JAB01566.1    KZ288335    PBC27859.1    LJIG01000844    KRT86096.1    ATLV01021831    KE525324    KFB46903.1    GGMS01005450    MBY74653.1    APGK01034929    KB740923    KB631963    ENN78083.1    ERL87489.1    GBBI01001342    JAC17370.1    KK854439    PTY15864.1    GECZ01007515    GECZ01000608    JAS62254.1    JAS69161.1    GEBQ01012325    JAT27652.1    KQ760629    OAD59739.1    KQ435851    KOX70731.1    GBGD01003309    JAC85580.1    GFDF01004936    JAV09148.1    GEZM01005547    JAV96105.1    GFTR01002526    JAW13900.1    GECU01027045    JAS80661.1    CCAG010002857    EZ424231    ADD20507.1    AJWK01030408    UFQT01000211    SSX21755.1    GL768123    EFZ12068.1    GL887888    EGI69690.1    KQ976424    KYM88395.1    ADTU01012852    KQ981906    KYN33257.1    LBMM01003490    KMQ93471.1    GL732607    EFX71705.1    GFDF01005007    JAV09077.1    KQ982548    KYQ55200.1    KK107371    EZA51843.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000283053    UP000005204    UP000037510    + More
UP000007151    UP000027135    UP000007798    UP000235965    UP000007801    UP000007266    UP000001819    UP000008744    UP000009192    UP000002282    UP000001292    UP000000304    UP000000803    UP000192221    UP000001070    UP000002320    UP000268350    UP000008792    UP000075883    UP000095300    UP000008711    UP000075884    UP000092553    UP000069272    UP000000673    UP000076408    UP000075880    UP000075920    UP000037069    UP000075903    UP000075886    UP000075900    UP000095301    UP000076407    UP000007062    UP000075840    UP000007819    UP000075885    UP000075901    UP000242457    UP000030765    UP000019118    UP000030742    UP000005203    UP000192223    UP000091820    UP000053105    UP000078200    UP000092445    UP000092444    UP000092461    UP000007755    UP000078540    UP000005205    UP000078541    UP000036403    UP000000305    UP000092443    UP000075809    UP000053097   

PRIDE

H9J3C6    Q9W199   

Pfam

PF00366   Ribosomal_S17

Interpro

IPR039193   S17mt        + More
IPR000266   Ribosomal_S17/S11       
IPR012340   NA-bd_OB-fold       

SUPFAM

SSF50249   SSF50249       

ProteinModelPortal

A0A2A4JHP5   A0A2H1VB61   A0A0N1PII5   A0A194QCY8   A0A3S2LT15   H9J3C6   + More
A0A0L7KSX4   A0A212EH12   A0A067QK75   B4NMR7   A0A2J7RKP4   A0A0P8ZQX1   D6WSR4   Q28ZX8   B4GGM6   B3MDN2   B4KNV9   B4PAV9   B4I2E8   B4QBJ5   Q9W199   A0A1W4V029   B4J8C6   B0WCB2   A0A3B0J293   A0A023EH87   W8BWQ0   B4LJU8   A0A182M9B4   A0A2S2NQ44   A0A1I8P5X9   B3NQG4   A0A1B6D0Q3   A0A182N814   A0A0M4EX24   A0A2M3ZAV5   A0A182FCG3   A0A0K8TP83   W5JQP4   A0A2H8U2A3   A0A2M4AXD8   A0A182YFK8   Q1HQG6   A0A1Q3F8L0   A0A182INY2   A0A2M4C2Y8   A0A1L8ECM6   A0A182WAA3   A0A0L0BPP1   A0A182VNP5   A0A182Q7E3   A0A182RTN7   A0A1I8MZ32   A0A182XJ89   Q7Q9P8   A0A182HP73   C4WWC7   A0A182PHD1   A0A0A1XJI9   A0A182T9V8   A0A0P4W3Y2   A0A0K8UT77   R4FPL0   A0A034WME9   T1DSX4   A0A2A3E9J0   A0A0T6BFI8   A0A084W9K9   A0A2S2QA89   N6TJQ0   A0A023F7Z1   A0A088AJ35   A0A1W4XAQ9   A0A1A9X498   A0A2R7W810   A0A1B6GIJ1   A0A1B6LVE5   A0A310SP52   A0A0N0BDP0   A0A069DP04   A0A1L8DRN9   A0A1Y1NHH8   A0A224XZ52   A0A1B6I136   A0A1A9UKZ5   A0A1A9ZTF4   D3TS29   A0A1B0CVC1   A0A336LUZ8   E9J521   F4W820   A0A195BPG0   A0A158NDS3   A0A195EZC1   A0A0J7KT20   E9H909   A0A1L8DRS2   A0A1A9YNH7   A0A151X4J4   A0A026W777  

PDB

6NF8     E-value=6.06282e-19,     Score=226

KEGG

101737237    K02961 small subunit ribosomal protein S17 | (RefSeq) 28S ribosomal protein S17, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005763   GO:0032543   GO:0005622   GO:0005840   GO:0003684   GO:0005634   GO:0042162   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR24088  

Length:

161

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00111

Exp number, first 60 AAs:

0.00111

Total prob of N-in:

0.40554

outside

1  -  161

 

 

Pi

198.029156

Theta

166.836553

Tajima's D

0.323867

CLR

0.305172

CSRT

0.460576971151442

Interpretation

Uncertain