Gene

KWMTBOMO11606  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004108

Annotation

PREDICTED:_RNA_polymerase_II_subunit_A_C-terminal_domain_phosphatase_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr19(+):9943579-9951404      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.654

CDS

ATGGCCGACAAAACTATACCTATTTTTGTTCCATCAGAAAAGCCTGTGAAACTCGCAAAGTGGAAAATAAAACAAGGTACTGTGGTAACACAAGGCCAAGTATTATTTTTATACAAAGATTTAGCGGGCGATGGTGAAGAGTTAAAGAAATTTAAATCATCACACGCTGGTACTGTGTCATCGATCAAGGTGAAAGAAGGAGACGTAGTAGAACCTAGTTCGGCTGTAGCAGATTTGGAAGAATGCCGCCATCCAACAGTGATGATGGAGATGTGCGCGGAGTGTGGAGCAGACCTCCGCAGCGAGGAGACCAAGAAGCTGGACGTGGCCATTGTACCAATGGTACACTCTGTACCTGAATTAAAAGTGTCTGAAGAACTGGCACAAAAACTAGGTAAAGAGGATGCTGAGCGTCTTCTGAAAGACAGGAAATTAGTACTTCTGGTAGATTTAGATCAAACATTAGTTCACACTACTAATGACAATATACCACCCAATCTAAAGGGAGTATTACACTTCTTCCTAAGAGGACCTGGAGGGCCAGGGCGTTGGTGTCATACGAGGCTTCGACCACGCACTCAAGAGTTTCTTGAATCAGCAGCAAAGAACTATGAACTTCACATATGTACATTTGGAGCCAGGCAATATGCACATGCCGTAGCTGAGCTCCTAGATCCGGAAAAGAAATATTTCTCACATAGGATACTATCCAGAGATGAATGCTTTGATCCTAGAACTAAAGCAGCCAATCTGAAAGCACTGTTTCCTTGTGGTGACAACATGGTTTGCATTATTGACGATCGGGAAGATGTGTGGAGACATGCTGCTAATCTAATTCATGTCAGGCCTTACTCATTTTTTCAATCGACCGGCGATATCAATGCACCGCCACCAATTGAAGAGAAACCAAAATTGACGATCGGCAAAAATGGTACTCAACCACAAGTACAAGAAATGCCGACTTTAGATGCAGAACCAGATGAAAATCTAGAAAAACCTGCTAACAACTTTGAAAAACCTACTGAAGGTAGCAACGGAAAAGTCATAAAAGAAGTAATGGAAGAGAAGCCAGTTGATATTAAGGAAGGCAATGAAAAAATTGAGGAAGTTGAATTACCGCCAGCTGAGCCAGTATGGACAGAGACATCTGATGGACAGATAGAGGTGGAAGATCCTGATGATTATCTTATCTATTTGGAGGATATTTTGAAGAGGATACATAAGCATTTTTATGATGTCTATGACAAAATGGGTCAGAAACAGATACCAGACCTTAAAATAGTAATACCTGAAGTTAAAAGTGAAGTGTTGACTGGAACTAGTTTAGTGTTTAGTGGTTTAGTGCCTACACATCAGAAACTGGAAACTTCTAGAGCCTATCTTGTGGCGAGAAGTCTTGGTGCTGAGGTGACACAGGATTTTACTGATAAAACAACTCATTTAGTAGCTGTTAGAGCAGGCACGGCAAAAGTAAACACAAGTAGGCGAATGACTGAGAAGAAATCCAGCAAATTACATGTTGTTACACCAGATTGGCTGTGGTCATGTGCGGAACGATGGGAACGAGTGGAAGAGAAATTATATACATTACAAAGAGGTGGACAGAGCAGCTGTCGTCGGCCGCCGGCGCACTGCAGCAGCCCGCCCCCGCCGCCCGCGCCCGTCGCCGCCCTCCGCCGCCGCACGCCCTCGGGACGCTTCATGGACACCATCAACCCGCTGCTCTCCTTCTCCAGCGACGACATTGCTGATATGGACCGAGAGGTTGAAGATATTTTCAATGAATCAGATGAGAGTTCCACTGATGATGAGAAACCATCCCAAGATGATGTTGATGATGAAGAAAACTTAAAGGAAGATCAACTAATTAGGATAGATGAAGAAAGTACTCAAGACAGATTACAAGAAACGCAAGATAGCTCTAATGAATCAGAAAACGACGAAGAACAGCCAAGACCACGGAAACGACCGCGCAAATCGACACCGCCGTCAGACGAAGAGCCGCCGGATGATGACGACAGCTCTTGGAACTTGATGGGCGCGGCACTTGAAAGAGAGTTCCTCGCGCAAGACTGA

Protein

MADKTIPIFVPSEKPVKLAKWKIKQGTVVTQGQVLFLYKDLAGDGEELKKFKSSHAGTVSSIKVKEGDVVEPSSAVADLEECRHPTVMMEMCAECGADLRSEETKKLDVAIVPMVHSVPELKVSEELAQKLGKEDAERLLKDRKLVLLVDLDQTLVHTTNDNIPPNLKGVLHFFLRGPGGPGRWCHTRLRPRTQEFLESAAKNYELHICTFGARQYAHAVAELLDPEKKYFSHRILSRDECFDPRTKAANLKALFPCGDNMVCIIDDREDVWRHAANLIHVRPYSFFQSTGDINAPPPIEEKPKLTIGKNGTQPQVQEMPTLDAEPDENLEKPANNFEKPTEGSNGKVIKEVMEEKPVDIKEGNEKIEEVELPPAEPVWTETSDGQIEVEDPDDYLIYLEDILKRIHKHFYDVYDKMGQKQIPDLKIVIPEVKSEVLTGTSLVFSGLVPTHQKLETSRAYLVARSLGAEVTQDFTDKTTHLVAVRAGTAKVNTSRRMTEKKSSKLHVVTPDWLWSCAERWERVEEKLYTLQRGGQSSCRRPPAHCSSPPPPPAPVAALRRRTPSGRFMDTINPLLSFSSDDIADMDREVEDIFNESDESSTDDEKPSQDDVDDEENLKEDQLIRIDEESTQDRLQETQDSSNESENDEEQPRPRKRPRKSTPPSDEEPPDDDDSSWNLMGAALEREFLAQD

Uniprot

H9J3M1   A0A2A4JIK0   A0A2H1VB77   A0A194QEB2   A0A212EGZ8   A0A1Y1NDS0   + More
D6WSR3   A0A1A9WPA2   A0A1B0FN26   A0A1A9YJ08   A0A1B0B694   A0A1A9UV41   A0A1B0AAP6   A0A182H2D7   A0A0M4E463   A0A1Q3EZ87   B4MP75   B0WCB3   A0A310SRQ9   A0A088AJB9   Q16EJ3   A0A0L7R7V8   E2B8Q6   A0A336LUZ3   A0A195CLI4   A0A2A3E837   A0A1S4G3I0   E9J520   F4W821   E2AXU1   E9H914   A0A151X4I5   A0A195EYG3   J9JN04   A0A2H8THJ5   A0A2S2R246   A0A158NDS2   A0A2S2R779   A0A195BR06   A0A1J1IT20   A0A2H8TU57   B4N3A4   A0A0K2UNY2   A0A0M8ZTC9   A0A0J7KSU8   A0A226F5J3   A0A3S0ZVS2   T1IZ83   V3ZU10   A0A0P5PDP6   A0A0P4YXM0   A0A0P5PBA0   A0A0P5QR90   A0A0P6D6D1   A0A0P5VFB5   A0A162T9U8   A0A0P6D6E1   A0A0P6BHT7   A0A0P5S3I0   A0A0P5KAY0   A0A0P6H9T5   A0A0P5SIF4   A0A1S3H005   A0A1S3K5N8   A0A0K8TI11   A0A0A9YEQ7   A0A146LM22   A0A0V0GBR8   A0A3S3P404   T1K4P5   A0A0N8BLQ5   A0A0P5LRN8   A0A0P5YXX2   A0A224XMS6   A0A0P5W7W5   T1ESM4   A0A1W0X3B0   A0A132AH82   A0A1D1VE07  

Pubmed

19121390    26354079    22118469    28004739    18362917    19820115    + More
26483478    17994087    17510324    20798317    21282665    21719571    21292972    21347285    23254933    25401762    26823975    26555130    27649274   

EMBL

BABH01021627    NWSH01001346    PCG71596.1    ODYU01001611    SOQ38077.1    KQ459185    + More
KPJ03285.1    AGBW02014995    OWR40763.1    GEZM01005547    JAV96104.1    KQ971354    EFA07148.1    CCAG010002874    JXJN01009035    JXUM01105103    JXUM01105104    KQ564939    KXJ71534.1    CP012524    ALC40754.1    GFDL01014428    JAV20617.1    CH963848    EDW73914.1    DS231886    EDS43358.1    KQ760629    OAD59738.1    CH478692    EAT32653.1    KQ414637    KOC66965.1    GL446361    EFN87962.1    UFQS01000211    UFQT01000211    SSX01374.1    SSX21754.1    KQ977600    KYN01568.1    KZ288335    PBC27860.1    GL768123    EFZ12041.1    GL887888    EGI69691.1    GL443699    EFN61749.1    GL732607    EFX71774.1    KQ982548    KYQ55199.1    KQ981906    KYN33258.1    ABLF02035887    GFXV01001788    MBW13593.1    GGMS01014875    MBY84078.1    ADTU01012852    GGMS01016652    MBY85855.1    KQ976424    KYM88394.1    CVRI01000059    CRL03381.1    GFXV01005980    MBW17785.1    CH964062    EDW78843.2    HACA01022241    CDW39602.1    KQ435851    KOX70730.1    LBMM01003490    KMQ93472.1    LNIX01000001    OXA65075.1    RQTK01000215    RUS84178.1    AFFK01020413    KB202823    ESO87837.1    GDIQ01132285    JAL19441.1    GDIP01225668    JAI97733.1    GDIQ01137017    JAL14709.1    GDIQ01130978    JAL20748.1    GDIQ01082137    JAN12600.1    GDIP01115821    JAL87893.1    LRGB01000005    KZS22024.1    GDIQ01082136    JAN12601.1    GDIP01028946    JAM74769.1    GDIQ01092886    JAL58840.1    GDIQ01193151    JAK58574.1    GDIQ01022616    JAN72121.1    GDIQ01092887    JAL58839.1    GBRD01000574    JAG65247.1    GBHO01013503    JAG30101.1    GDHC01010763    JAQ07866.1    GECL01000593    JAP05531.1    NCKU01001628    RWS11626.1    CAEY01001579    GDIQ01165419    JAK86306.1    GDIQ01166959    JAK84766.1    GDIP01053603    JAM50112.1    GFTR01007127    JAW09299.1    GDIP01090134    JAM13581.1    AMQM01001081    KB097143    ESN98945.1    MTYJ01000020    OQV21995.1    JXLN01014887    KPM10287.1    BDGG01000005    GAU99025.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000007266    UP000091820    + More
UP000092444    UP000092443    UP000092460    UP000078200    UP000092445    UP000069940    UP000249989    UP000092553    UP000007798    UP000002320    UP000005203    UP000008820    UP000053825    UP000008237    UP000078542    UP000242457    UP000007755    UP000000311    UP000000305    UP000075809    UP000078541    UP000007819    UP000005205    UP000078540    UP000183832    UP000053105    UP000036403    UP000198287    UP000271974    UP000030746    UP000076858    UP000085678    UP000285301    UP000015104    UP000015101    UP000186922   

PRIDE

H9J3M1   

Pfam

PF03031   NIF        + More
PF09309   FCP1_C
PF00533   BRCT
PF12738   PTCB-BRCT
PF13533   Biotin_lipoyl_2
PF00364   Biotin_lipoyl
PF01398   JAB
PF13012   MitMem_reg

Interpro

IPR011947   FCP1_euk        + More
IPR011053   Single_hybrid_motif       
IPR004274   FCP1_dom       
IPR036412   HAD-like_sf       
IPR036420   BRCT_dom_sf       
IPR001357   BRCT_dom       
IPR023214   HAD_sf       
IPR015388   FCP1_C       
IPR039189   Fcp1       
IPR039562   MFP_biotin_lipoyl_2       
IPR000089   Biotin_lipoyl       
IPR024969   Rpn11/EIF3F_C       
IPR033858   MPN_RPN7_8       
IPR000555   JAMM/MPN+_dom       
IPR037518   MPN       

SUPFAM

SSF52113   SSF52113        + More
SSF51230   SSF51230       
SSF56784   SSF56784       

Gene 3D

3.40.50.1000     3.40.50.10190    

CDD

cd00027  BRCT
cd08062  MPN_RPN7_8

ProteinModelPortal

H9J3M1   A0A2A4JIK0   A0A2H1VB77   A0A194QEB2   A0A212EGZ8   A0A1Y1NDS0   + More
D6WSR3   A0A1A9WPA2   A0A1B0FN26   A0A1A9YJ08   A0A1B0B694   A0A1A9UV41   A0A1B0AAP6   A0A182H2D7   A0A0M4E463   A0A1Q3EZ87   B4MP75   B0WCB3   A0A310SRQ9   A0A088AJB9   Q16EJ3   A0A0L7R7V8   E2B8Q6   A0A336LUZ3   A0A195CLI4   A0A2A3E837   A0A1S4G3I0   E9J520   F4W821   E2AXU1   E9H914   A0A151X4I5   A0A195EYG3   J9JN04   A0A2H8THJ5   A0A2S2R246   A0A158NDS2   A0A2S2R779   A0A195BR06   A0A1J1IT20   A0A2H8TU57   B4N3A4   A0A0K2UNY2   A0A0M8ZTC9   A0A0J7KSU8   A0A226F5J3   A0A3S0ZVS2   T1IZ83   V3ZU10   A0A0P5PDP6   A0A0P4YXM0   A0A0P5PBA0   A0A0P5QR90   A0A0P6D6D1   A0A0P5VFB5   A0A162T9U8   A0A0P6D6E1   A0A0P6BHT7   A0A0P5S3I0   A0A0P5KAY0   A0A0P6H9T5   A0A0P5SIF4   A0A1S3H005   A0A1S3K5N8   A0A0K8TI11   A0A0A9YEQ7   A0A146LM22   A0A0V0GBR8   A0A3S3P404   T1K4P5   A0A0N8BLQ5   A0A0P5LRN8   A0A0P5YXX2   A0A224XMS6   A0A0P5W7W5   T1ESM4   A0A1W0X3B0   A0A132AH82   A0A1D1VE07  

PDB

3EF1     E-value=1.13206e-39,     Score=413

KEGG

101737093    K15732 RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] | (RefSeq) RNA polyme

GO

GO:0070940   GO:0008420   GO:0005634   GO:0016021   GO:0005838   GO:0004721   GO:0008081   GO:0015074   GO:0003684   GO:0042162   GO:0043564   GO:0006418   GO:0003824  

PANTHER

PTHR23081  

Length:

691

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.00015

outside

1  -  691

 

 

Pi

218.642066

Theta

186.300498

Tajima's D

0.425237

CLR

0.191309

CSRT

0.485075746212689

Interpretation

Uncertain