Gene

KWMTBOMO11600

Pre Gene Modal

BGIBMGA004104

Annotation

PREDICTED:_protein_dead_ringer_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr19(+):9465604-9578780      View in EpiBrowser

Transcription factor

ARID

Location in the cell

Nuclear   Reliability : 4.458

CDS

ATGGCCAAGTCGGTCCTAGACCTGTACGAGCTGTACAACCTTGTGATAGCACGTGGAGGGCTCGTGGAGGTGATCAACAAGAAACTCTGGCAGGAGATAATTAAGGGACTCCGGCTGCCGTCTTCTATCACGTCCGCTGCCTTCACTTTACGCACTCAATATATGAAATATCTATACGACTATGAATGTGAGAAGAAAAATCTGTCCACGCGCAGCGAGTTGGATGCTGCTATTGAAGGTAACAAGCGCGAGGGAAGACGCGCCTCCGGACAATACGACGCCCAAGCTGCTTTAGCAATGCCGCCATTGAATCGCGGAGTCCCGGCCTCTCTCGCCCAGCTCTCCCAGCACATGCAGCCGCTCTCTCTCTCCCTCGGAGGAGGAGTCGCTGGAGTACCACGTCTACCACCACTGCCTCCACATCCCACTCACATCTCACAACACGATATTGAATACAGAGTAAGGGAATATATGAAGATGATACAACAACAGCGGGAGATGATGAGGAATGGTTCAGAATCGCCACCAGGCGGTAACGGGCCCACTCCTATGATCTCGCCGCGTGATGCCCTTAACGCTATTGATGTGTCTCGACTGACCCTTTGGTCTCTGTACAATAACAACAACCATAGCCCGCAGCCGGAACTAGAACCGCAACGAGAGGCCTTGAACCTTAGCGAGAGTCCGAATTCTATCACCAGCGGCTGCAAGCGTGAAGCGTGCCGGTCTCCCGCGCCGCCCCCCGCCAAGCGCCGCACCCCGCGCCCGCCCTCCCCGCGCCTCCCCTCCCCGCCGCGTCAGCCCTGCAGCAACACACCCCAGGTCAACGGCTCCAACGGAATGAACGGGGCTGCTGCCTTTAAAATCACTACTAAAGGTGACGCCAGCACTGGGGACCAGCAACTCGTAGTCTCCATCGAACTGAATGGCGTCACGTACGAAGGCGTATTGTTCCCATCGCAAAACAGCAACGGTCAGAACGGGCACAGGCAAATGGTGTCCTAG

Protein

MAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLNRGVPASLAQLSQHMQPLSLSLGGGVAGVPRLPPLPPHPTHISQHDIEYRVREYMKMIQQQREMMRNGSESPPGGNGPTPMISPRDALNAIDVSRLTLWSLYNNNNHSPQPELEPQREALNLSESPNSITSGCKREACRSPAPPPAKRRTPRPPSPRLPSPPRQPCSNTPQVNGSNGMNGAAAFKITTKGDASTGDQQLVVSIELNGVTYEGVLFPSQNSNGQNGHRQMVS

Uniprot

H9J3L7   A0A212EW44   A0A3S2TJE0   A0A2H1VJH4   A0A2A4JMV4   A0A194QIL2   + More
A0A194QVN6   S4PDQ6   A0A139WF56   A0A139WFB1   A0A1Y1JZG9   A0A1Y1K447   A0A1Y1JWE4   A0A0C9RE32   U5EZ56   A0A0P6IJP4   A0A1I8P704   A0A023EY42   A0A1I8MN97   A0A1B6JUY7   A0A1J1J922   A0A182U1C7   A0A1W4WJE4   A0A182VEX8   A0A182LBG7   A7UT87   A0A2M4CLI2   A0A182ITE9   A0A084W2F0   A0A1Q3FW38   A0A1Q3FVK3   A0A2M4AAP6   A0A0M4EV64   A0A1B6DEC3   A0A0L0C9N2   B4NMM1   A0A0R3NTT2   B4P9Q7   A0A0R1DVG2   A0A0P6FRC2   A0A0J9RJU9   A0A0J9RJ83   B4I8R0   B4GHU8   Q28ZF1   A0A0R3NNF4   A0A0Q5VQ35   B3NPQ0   A0A0Q5VP34   A0A0Q5VW04   A0A1B0AMK3   A0A1A9XH89   B4LLY0   A0A1B0FDL6   A0A0Q9X8M2   A0A0Q9X911   B4KS05   A0A1B6M9L7  

Pubmed

19121390    22118469    26354079    23622113    18362917    19820115    + More
28004739    24945155    25315136    20966253    12364791    24438588    26108605    17994087    15632085    17550304    22936249   

EMBL

BABH01021584    AGBW02012080    OWR45718.1    RSAL01000096    RVE47701.1    ODYU01002724    + More
SOQ40582.1    NWSH01001076    PCG72730.1    KQ459185    KPJ03291.1    KQ461073    KPJ09598.1    GAIX01004852    JAA87708.1    KQ971354    KYB26562.1    KYB26561.1    GEZM01098929    JAV53638.1    GEZM01098930    JAV53637.1    GEZM01098928    JAV53639.1    GBYB01014819    JAG84586.1    GANO01001398    JAB58473.1    GDIQ01003326    JAN91411.1    GAPW01000139    JAC13459.1    GECU01004707    JAT03000.1    CVRI01000075    CRL08554.1    AAAB01008900    EDO64092.1    GGFL01001965    MBW66143.1    ATLV01019610    ATLV01019611    ATLV01019612    ATLV01019613    KE525275    KFB44394.1    GFDL01003412    JAV31633.1    GFDL01003411    JAV31634.1    GGFK01004535    MBW37856.1    CP012524    ALC41712.1    GEDC01013308    JAS23990.1    JRES01000729    KNC28915.1    CH964282    EDW85610.1    CM000071    KRT02437.1    CM000158    EDW92365.2    KRK00478.1    GDIQ01045405    JAN49332.1    CM002911    KMY96077.1    KMY96078.1    CH480824    EDW56985.1    CH479183    EDW36068.1    EAL25662.2    KRT02436.1    CH954179    KQS63044.1    EDV56841.2    KQS63043.1    KQS63045.1    JXJN01000483    CH940648    EDW62003.2    CCAG010008323    CH933808    KRG04668.1    KRG04669.1    EDW09446.2    GEBQ01007345    JAT32632.1   

Proteomes

UP000005204    UP000007151    UP000283053    UP000218220    UP000053268    UP000053240    + More
UP000007266    UP000095300    UP000095301    UP000183832    UP000075902    UP000192223    UP000075903    UP000075882    UP000007062    UP000075880    UP000030765    UP000092553    UP000037069    UP000007798    UP000001819    UP000002282    UP000001292    UP000008744    UP000008711    UP000092460    UP000092443    UP000008792    UP000092444    UP000009192   

PRIDE

H9J3L7   

Pfam

PF01388   ARID

Interpro

IPR001606   ARID_dom        + More
IPR036431   ARID_dom_sf       
IPR023334   REKLES_domain       

SUPFAM

SSF46774   SSF46774       

Gene 3D

1.10.150.60    

ProteinModelPortal

H9J3L7   A0A212EW44   A0A3S2TJE0   A0A2H1VJH4   A0A2A4JMV4   A0A194QIL2   + More
A0A194QVN6   S4PDQ6   A0A139WF56   A0A139WFB1   A0A1Y1JZG9   A0A1Y1K447   A0A1Y1JWE4   A0A0C9RE32   U5EZ56   A0A0P6IJP4   A0A1I8P704   A0A023EY42   A0A1I8MN97   A0A1B6JUY7   A0A1J1J922   A0A182U1C7   A0A1W4WJE4   A0A182VEX8   A0A182LBG7   A7UT87   A0A2M4CLI2   A0A182ITE9   A0A084W2F0   A0A1Q3FW38   A0A1Q3FVK3   A0A2M4AAP6   A0A0M4EV64   A0A1B6DEC3   A0A0L0C9N2   B4NMM1   A0A0R3NTT2   B4P9Q7   A0A0R1DVG2   A0A0P6FRC2   A0A0J9RJU9   A0A0J9RJ83   B4I8R0   B4GHU8   Q28ZF1   A0A0R3NNF4   A0A0Q5VQ35   B3NPQ0   A0A0Q5VP34   A0A0Q5VW04   A0A1B0AMK3   A0A1A9XH89   B4LLY0   A0A1B0FDL6   A0A0Q9X8M2   A0A0Q9X911   B4KS05   A0A1B6M9L7  

PDB

1KQQ     E-value=1.02884e-38,     Score=401

KEGG

101737140    no KO assigned | (RefSeq) protein dead ringer

GO

GO:0005634   GO:0003677   GO:0001228   GO:0000977   GO:0007517   GO:0008049   GO:0007411   GO:0000122   GO:0042063   GO:0045893   GO:0009952   GO:0048813   GO:0000976   GO:0009880   GO:0045924   GO:0070491   GO:0008152   GO:0005524   GO:0000723   GO:0003684   GO:0042162   GO:0043564   GO:0006418   GO:0003824  

Subcellular location

Nucleus  

Length:

334

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01516

Exp number, first 60 AAs:

0.0146

Total prob of N-in:

0.01304

outside

1  -  334

 

 

Pi

213.653026

Theta

172.175117

Tajima's D

0.795547

CLR

0.534386

CSRT

0.6021198940053

Interpretation

Uncertain