Gene

KWMTBOMO11591

Pre Gene Modal

BGIBMGA004100

Annotation

PREDICTED:_DNA_replication_complex_GINS_protein_PSF3-like_[Plutella_xylostella]

Location

Bomo_Chr19(+):9346998-9347996      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.055

CDS

ATGGGATTCTTAGACCCTTCTGCTGCTGATGTTGACCTAAAAGCCGGCTGCAGTGTAGAAATACCACTATGGCTAGCCGAATCCTTATATTCTAGAAGACCTCCTCTGGTTAGCGTAGAATTGCCAAAAATCTATAAAGAATCATATAGAGAGATCCTAAATGCGGATGCGTGCGCGGTCGATCTTCATAAGTTAGGGCAGCATTTCTATGAACTTGGATGCTATGTAGCTAAACATGATATCAAAAGCGAAGTTGCTGCTACATTAAACAATACATATCGTCAAAGGTTTAGAATGTTATTGGCTGCCAGTATGTCGAGTGACTCAATAAACACAATGCAACCACTTTCTGCTAGTGAGAGAATACAAGCTGCAGATGCTTCTAATACTGAGAGATCATTTTTAACCTGGTTACAAAGAGGAGACACTCCATTGACAACAGCTAATATGGTTGCAAATCACAGGAAAAGAAAGCGTGCTGAAATGGAAATGCTATAG

Protein

MGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKIYKESYREILNADACAVDLHKLGQHFYELGCYVAKHDIKSEVAATLNNTYRQRFRMLLAASMSSDSINTMQPLSASERIQAADASNTERSFLTWLQRGDTPLTTANMVANHRKRKRAEMEML

Uniprot

H9J3L3   A0A2A4JDK7   S4PPM5   A0A194QVP6   A0A194QD03   A0A212EW42   + More
A0A2H1V780   A0A0L7LLV9   A0A2J7PI27   A0A1Y1JX65   A0A0T6B384   A0A067R1C6   A0A2P6L1W0   D6WSJ1   N6TBT3   A0A2P8Z3A5   A0A1W4XJU6   A7SMZ3   A0A2B4RIA1   A0A3M6U830   A0A210QQ66   K1RMP1   A0A087T995   W4YRM4   A0A1S3GZP2   E9H7Y6   A0A154NXX7   A0A1S3KBC5   C3XTX5   A0A0P5TE53   A0A0P5TJA1   A0A232FGI0   A0A0P5XMB3   A0A1J1ID14   V3ZGB8   K7IST4   T1JJC2   E2C294   A0A0P5FHR7   A0A3L5TQ06   A0A1A8L8V5   A0A1A8UWN4   F4WYZ6   A0A3S0Z9C2   A0A2R5LH68   E9ILY8   E1ZVI3   A0A195F9T0   A0A195CEN8   A0A1B6G233   A0A0B7BGQ5   A0A3N0Z7Y2   A0A1B6I7M0   A0A026WVT8   A0A195BWZ9   A0A3Q2X4D5   A0A1B6DKP1   A0A3B4H0C4   A0A3P8NH50   A0A3P9CGB3   A0A158NC88   A0A147BKE5   A0A2A3E180   A0A3Q3M5G1   T1FNF9   A0A3P9IM13   A0A131Y8R3   A0A3Q2DDS4   A0A0N8AC23   A0A3B3INW2   A0A1B6C2G2   A0A1B6M091   A0A3Q0RNQ6   A0A3B4TB60   W5M6E5   A0A3S2PE49   E3TET6   A0A0N8JVY7   A0A1W4YTE8   A0A3B4WX09   A0A3Q2ZW21   A0A3Q2PZ89   I3JXP0   A0A2P2I283   A0A3M7SVQ4   A0A2I4D9J0   A0A195EBD9   A0A3B3DDL4   A0A151WFP2   A0A3Q2ZFU0   Q7ZT01   A0A2U9C105   G3NCE0   A0A060X294   A0A1S3KMJ2   A0A3B3DBK4   A0A3B1K740   A0A3B1JTL2   A0A3Q3QG96   A0A1U7QGW5  

Pubmed

19121390    23622113    26354079    22118469    26227816    28004739    + More
24845553    18362917    19820115    23537049    29403074    17615350    30382153    28812685    22992520    21292972    18563158    28648823    23254933    20075255    20798317    26977809    21719571    21282665    24508170    30249741    25186727    21347285    29652888    17554307    20634964    30375419    29451363    12730133    24755649    25329095   

EMBL

BABH01021571    NWSH01001992    PCG69493.1    GAIX01000157    JAA92403.1    KQ461073    + More
KPJ09608.1    KQ459185    KPJ03299.1    AGBW02012080    OWR45710.1    ODYU01000850    SOQ36232.1    JTDY01000700    KOB76171.1    NEVH01025130    PNF15981.1    GEZM01100694    JAV52818.1    LJIG01016026    KRT81836.1    KK852779    KDR16687.1    MWRG01002486    PRD32556.1    KQ971354    EFA07113.1    APGK01036196    KB740937    KB632052    ENN77754.1    ERL88332.1    PYGN01000217    PSN50963.1    DS469715    EDO34905.1    LSMT01000538    PFX16529.1    RCHS01002051    RMX49823.1    NEDP02002420    OWF50859.1    JH817099    EKC42875.1    KK114081    KFM61684.1    AAGJ04146738    GL732602    EFX72111.1    KQ434781    KZC04467.1    GG666464    EEN68349.1    GDIP01127764    JAL75950.1    GDIP01131228    LRGB01000024    JAL72486.1    KZS21766.1    NNAY01000238    OXU29795.1    GDIP01070018    JAM33697.1    CVRI01000047    CRK98175.1    KB202444    ESO90268.1    AAZX01006436    JH431448    GL452091    EFN77941.1    GDIQ01257824    JAJ93900.1    KV593078    OPL21288.1    HAEF01003541    SBR40923.1    HADY01009705    HAEJ01011285    SBS51742.1    GL888463    EGI60650.1    RQTK01001581    RUS69771.1    GGLE01004744    MBY08870.1    GL764129    EFZ18298.1    GL434534    EFN74820.1    KQ981727    KYN37136.1    KQ977873    KYM99165.1    GECZ01013416    JAS56353.1    HACG01045182    CEK92047.1    RJVU01006614    ROL54560.1    GECU01024803    JAS82903.1    KK107079    QOIP01000010    EZA60150.1    RLU17374.1    KQ976396    KYM92815.1    GEDC01011047    JAS26251.1    ADTU01011743    GEGO01004154    JAR91250.1    KZ288476    PBC25284.1    AMQM01006392    KB097417    ESN97202.1    GEFM01001310    JAP74486.1    GDIP01162153    JAJ61249.1    GEDC01029585    GEDC01018926    JAS07713.1    JAS18372.1    GEBQ01010636    JAT29341.1    AHAT01010569    CM012442    RVE71378.1    GU588868    ADO28822.1    JARO02012126    KPP59449.1    AERX01003511    AERX01003512    IACF01002504    LAB68155.1    REGN01000696    RNA39904.1    KQ979236    KYN22154.1    KQ983211    KYQ46605.1    BC043845    BC106314    AB097170    AAH43845.1    AAI06315.1    BAC66460.1    CP026252    AWP08982.1    FR904913    CDQ73581.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000235965    UP000027135    UP000007266    UP000019118    UP000030742    UP000245037    UP000192223    UP000001593    UP000225706    UP000275408    UP000242188    UP000005408    UP000054359    UP000007110    UP000085678    UP000000305    UP000076502    UP000001554    UP000076858    UP000215335    UP000183832    UP000030746    UP000002358    UP000008237    UP000007755    UP000271974    UP000000311    UP000078541    UP000078542    UP000053097    UP000279307    UP000078540    UP000264840    UP000261460    UP000265100    UP000265160    UP000005205    UP000242457    UP000261640    UP000015101    UP000265200    UP000265020    UP000001038    UP000261340    UP000261420    UP000018468    UP000221080    UP000034805    UP000192224    UP000261360    UP000264800    UP000265000    UP000005207    UP000276133    UP000192220    UP000078492    UP000261560    UP000075809    UP000264820    UP000246464    UP000007635    UP000193380    UP000087266    UP000018467    UP000261600    UP000189706   

PRIDE

H9J3L3   

Pfam

PF05916   Sld5

Interpro

IPR036224   GINS_bundle-like_dom_sf        + More
IPR021151   GINS_A       
IPR038437   GINS_Psf3_sf       
IPR010492   GINS_Psf3       

SUPFAM

SSF158573   SSF158573       

Gene 3D

1.20.58.2050    

ProteinModelPortal

H9J3L3   A0A2A4JDK7   S4PPM5   A0A194QVP6   A0A194QD03   A0A212EW42   + More
A0A2H1V780   A0A0L7LLV9   A0A2J7PI27   A0A1Y1JX65   A0A0T6B384   A0A067R1C6   A0A2P6L1W0   D6WSJ1   N6TBT3   A0A2P8Z3A5   A0A1W4XJU6   A7SMZ3   A0A2B4RIA1   A0A3M6U830   A0A210QQ66   K1RMP1   A0A087T995   W4YRM4   A0A1S3GZP2   E9H7Y6   A0A154NXX7   A0A1S3KBC5   C3XTX5   A0A0P5TE53   A0A0P5TJA1   A0A232FGI0   A0A0P5XMB3   A0A1J1ID14   V3ZGB8   K7IST4   T1JJC2   E2C294   A0A0P5FHR7   A0A3L5TQ06   A0A1A8L8V5   A0A1A8UWN4   F4WYZ6   A0A3S0Z9C2   A0A2R5LH68   E9ILY8   E1ZVI3   A0A195F9T0   A0A195CEN8   A0A1B6G233   A0A0B7BGQ5   A0A3N0Z7Y2   A0A1B6I7M0   A0A026WVT8   A0A195BWZ9   A0A3Q2X4D5   A0A1B6DKP1   A0A3B4H0C4   A0A3P8NH50   A0A3P9CGB3   A0A158NC88   A0A147BKE5   A0A2A3E180   A0A3Q3M5G1   T1FNF9   A0A3P9IM13   A0A131Y8R3   A0A3Q2DDS4   A0A0N8AC23   A0A3B3INW2   A0A1B6C2G2   A0A1B6M091   A0A3Q0RNQ6   A0A3B4TB60   W5M6E5   A0A3S2PE49   E3TET6   A0A0N8JVY7   A0A1W4YTE8   A0A3B4WX09   A0A3Q2ZW21   A0A3Q2PZ89   I3JXP0   A0A2P2I283   A0A3M7SVQ4   A0A2I4D9J0   A0A195EBD9   A0A3B3DDL4   A0A151WFP2   A0A3Q2ZFU0   Q7ZT01   A0A2U9C105   G3NCE0   A0A060X294   A0A1S3KMJ2   A0A3B3DBK4   A0A3B1K740   A0A3B1JTL2   A0A3Q3QG96   A0A1U7QGW5  

PDB

2Q9Q     E-value=5.06898e-21,     Score=244

KEGG

101736387    K10734 GINS complex subunit 3 | (RefSeq) DNA replication complex GINS protein PSF3

GO

GO:0006260   GO:0005634   GO:0007507   GO:0003682   GO:0000811   GO:0005654  

PANTHER

PTHR22768  

Subcellular location

Nucleus  

Length:

165

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00116

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.04035

outside

1  -  165

 

 

Pi

109.155581

Theta

148.121706

Tajima's D

-0.843473

CLR

27.859257

CSRT

0.170941452927354

Interpretation

Uncertain