SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11583  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA004023
Annotation
Cyclin_[Operophtera_brumata]
Location in the cell
Cytoplasmic   Reliability : 1.587
 

Sequence

CDS
ATGAAAGACTTAGTTGACGTAATGGCTTTGCAAAACAGACGTGAAAAGCGCGTACCCGACTATCGAGGCGCGCCGAACCACAGCTTAGCAACAAATTTTGTTTTTGAATGTGGAATAAAGCTTGGCTTGCAGCCTGCAACTATAGCAACTGCTGCCATATTTTACCACAAATTCTTCAAAGAGGCCGACAAGAATGATTACGACTGCTACGTAATCTGCACTGCTTGTTTGTGTGCAGCCGGGAAATCTCGAGATGAGCCTGTTAGGCTGCGAGATGCTGTAAATGTAGCACACAATTCGATAAATCGTGGAGCCGGTCCGTTGGAGTTAGGCGACGAGTACTGGTCATGGCGAAGTGCTGTAGCTCAAGCCGAGCTTCTTGTGCTGAGACTGCTGGGATTTAATCTGGAAGCGCCGTCGCCACACCGGTATCTATTGCATTATCTCAAATCGCTGCAAGAATGGTTTCCAGTAGCGCAGTGGCGTTCAGCTCCCATTGCTCGAATGGCAATGGCTTTCCTTCAGGATTTCCATCACTCACCAGCAGTACTTGATTATCGAGCACCCCATATAGCAGTGGCGTGTTTAACTTTAGCTTTACATGTATTAGGAGTATCAGTGCCATTGGCATCCACACTAGATGATGATGCTGCATGGTGTTCAGTTTTCACAAAGGATCTGCAGAAAGAAAAAAATTGGGAAATAATGGAGAAGATAATGCAAGTTTATGGTCGTGAACCGGAACCTTTGTAA
Protein
MKDLVDVMALQNRREKRVPDYRGAPNHSLATNFVFECGIKLGLQPATIATAAIFYHKFFKEADKNDYDCYVICTACLCAAGKSRDEPVRLRDAVNVAHNSINRGAGPLELGDEYWSWRSAVAQAELLVLRLLGFNLEAPSPHRYLLHYLKSLQEWFPVAQWRSAPIARMAMAFLQDFHHSPAVLDYRAPHIAVACLTLALHVLGVSVPLASTLDDDAAWCSVFTKDLQKEKNWEIMEKIMQVYGREPEPL

Summary

Similarity
Belongs to the cyclin family.
EMBL
BABH01021563    RSAL01000096    RVE47711.1    JTDY01000042    KOB79215.1    GDQN01003811    + More
GDQN01002510    JAT87243.1    JAT88544.1    NWSH01001566    PCG70840.1    PCG70841.1    GAIX01000124    JAA92436.1    KQ459185    KPJ03306.1    KQ461073    KPJ09615.1    ODYU01013106    SOQ59791.1    AGBW02014665    OWR41255.1    KQ971352    EFA06631.1    NEVH01006994    PNF36090.1    PNF36088.1    KK853284    KDR08981.1    GEZM01004710    JAV96325.1    GALX01005889    JAB62577.1    APGK01028620    BT126880    KB740694    KB632300    AEE61842.1    ENN79461.1    ERL91750.1    GANO01003154    JAB56717.1    JRES01001049    KNC25973.1    JXUM01077808    KQ563028    KXJ74617.1    DS231870    EDS41009.1    CH477227    EAT47089.1    GFDL01015268    JAV19777.1    UFQT01000523    SSX24942.1    CCAG010017825    EZ422472    ADD18748.1    JXJN01009258    GDAI01000281    JAI17322.1    GAMC01011826    GAMC01011824    GAMC01011822    JAB94731.1    GEDC01001850    JAS35448.1    GECZ01023897    JAS45872.1    LBMM01003720    KMQ93205.1    GEBQ01013598    JAT26379.1    GL888818    EGI57898.1    KQ976662    KYM78551.1    DS235442    EEB15794.1    ADTU01014830    KZ288405    PBC26169.1    GL435242    EFN73689.1    JR052861    AEY61803.1    GL768221    EFZ11769.1    KQ414632    KOC67205.1    GL451202    EFN79748.1    KK107135    QOIP01000006    EZA58037.1    RLU21621.1    KQ979568    KYN20885.1    KQ982314    KYQ57907.1    KQ434936    KZC11907.1    GBYB01008176    JAG77943.1    KQ435922    KOX68540.1    KQ981864    KYN34251.1    GECU01020246    JAS87460.1    AJWK01017457    GECU01015779    JAS91927.1    GDHF01033223    GDHF01012808    GDHF01011986    GDHF01009473    GDHF01008081    JAI19091.1    JAI39506.1    JAI40328.1    JAI42841.1    JAI44233.1    GFDF01003163    JAV10921.1    ATLV01022881    KE525337    KFB48029.1    GFDF01003164    JAV10920.1    AAAB01008900    EAA09452.4    APCN01002982    AXCM01005203    CH916367    EDW01317.1    AAAB01006600    EAA02814.3    CH940648    KRF79938.1    CH902617    EDV42674.1    CH933808    EDW10410.1    GAPW01004045    JAC09553.1    CM000160    EDW95907.2    OUUW01000013    SPP88006.1    CM000070    EAL27682.4    AE014297    BT012450    AAF55556.1    AAF55557.1    AAN13772.1    AAN13773.1    AAS93721.1    BT010013    AAQ22482.1    AXCN02000947    BT001886    AAN71660.1    CH964272    EDW84536.1    EDW61360.2    PYGN01000284    PSN49340.1    GDHC01020290    JAP98338.1   
Pfam
PF00134   Cyclin_N        + More
PF07690   MFS_1
Interpro
IPR028759   Cyclin-Q        + More
IPR013763   Cyclin-like       
IPR006671   Cyclin_N       
IPR036915   Cyclin-like_sf       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
IPR011701   MFS       
SUPFAM
SSF47954   SSF47954        + More
SSF103473   SSF103473       
PDB
6CKX     E-value=5.78122e-13,     Score=177

Ontologies

Topology

Length:
250
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.39412
Exp number, first 60 AAs:
0.68084
Total prob of N-in:
0.07060
outside
1  -  250
 
 

Population Genetic Test Statistics

Pi
148.700458
Theta
156.129203
Tajima's D
-0.235404
CLR
124.363948
CSRT
0.308884555772211
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 LLGFNLEAPSPHR 100.00 2e-05
28556443 SLQEWFPVAQWR 100.00 0.003
28556443 SAVAQAELLVLR 100.00 0.015
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