SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11580
Pre Gene Modal
BGIBMGA004095
Annotation
PREDICTED:_uncharacterized_protein_LOC106716793_isoform_X2_[Papilio_machaon]
Location
Bomo_Chr19(+):9226248-9236062      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.239
 

Sequence

CDS
ATGCAGAATAATGGATTAAAACATTTCCATTTTAATTTTAAAGACATATTATTGGATGAAATAGCTTTGGACGGCCTAGAAGGCATTGGAATCGATTTGCTATGGAGAAGAATAGAACATCGTCTGTCTCTACCAGTAACTCAGAAAATGAAGATACGCTTATGGAATACTATAATTAATTCAAATAGTTTATGCTTCTATTTGCTGCCAGAACCCGTGCCTATATTTCCAATTTTAGACAGGTTTGCATTAGTTGATCCAGATAGTGGTAACTTCAGAGATCCTACTGAATACATTGATGGGCCCTATGAATATAATCCAATTGAGAATGAATATGGTTCTTGCAAGTATTACAGAGAACGAACTCTTTTACCTAATGAAATTATAAGATGTATATCCTATGATGAGGTGGTATCAAAATATGGAGATTTATTAGTGATTGTGGCAAACATAGAAGCACGATGGAGGGCTTTGGGCCCACACTTGCCTATAACATACCTCAATTATTTGTCCAACATACATTACTGCATATTGGAGCTTATCGGAAGATCAAGAGAAAATGGTCAAATGACAATTGGTACAAGTAACATCAACAAAATAGTTAAAGAACCAAAAAGTCTATTCTACCATAGGAAACAACTGCAAGATTTAGACTTAATAAAAGTACAATATGTTACGCAAGTACTAAACTCAAGAGGTGTAAAAAGTCTAATGTTGCGACTCAAGAAGTACCACCAACCAAAAATACTTACGATACCAAAACAAGGGGGCTTGTATAATATTGTGGAGTATTTAAAAAGCAAACCTGATTATAGTGAAAGAACAGAGGTATTAATAAAAAAAGGCCTGCTGACTTCAGCACAAATAAAAAAGATGAAAAAAGGAGCTAACATATTCAATATTGAAGACAGAGAAGTGATTGATTCTAAAAAACAAAGAGTAATGAAAAGAAAATATATTCAAATCGTACCTCAGAGTGATGAGTCCTCAGATTCAGAAGACGAAAACAATGTGGAACCTATCAAATGTCAGTACAAAGTAGGTGTGACAATATTAAGGCAGGCTTATGAGTTACTACTAGCAGCAGGCCGCAAGGGTCTAACTCAAGTGGACATATCTAAGATGCTTGGAGTAGAAGTATATACAAGTAGAATAATATGCGGTGTATTCAAGGCAAAACATGTTGTACGCGTTTTTCTGGAAGATAAAGGTAGACAAAGAACTGCAAGGTACATTGCTATAGCTAATACTGAAAAAATTGATGACACATATGCAACAGAGAAGAAAAAGTTTCTAGAGTACCTCCAAGAAAGCACGAGTAGATGTGATAACGACCAATCTGATTCCACTGAAGTTGCAATGGCAGGTGACATTCAGGATAAAACAAATACAAGTGTAACTAATGACCCAGACAATCCAATAACTGAAGTTAAAGTTTTTTGTGACCTAGATCAAACAAAAATAAAACCACTATACACCGAAAGCTACCCAACTTTAAGACAATTAAGATTTGCTAATGGCGTACTCAAAGTTATTAAAGAGCGACTATGTGTATGCGGATACATATCGCTCAGCACTCTTGTCGCTTCAGAAATAGGCGAGACTCCGTTAGATGCTAAATGCTTCAAAATCTTTTTACAAAAATTGGCCAACAATGGTCACATTAAAATGTACCGAGTAAAATGGCCAGGATTTCAAAACAGATACACGAATTTCATTTGCGCCTCACATGTGAAAGCGACGGATGATATAATCAAATCGAAATACAAAGAAATAAGCGTCAGAGCTGCCTGGAACGCAAAAGGAAAATTAGTCAAATCAAATGATATTGGAAACGCTTCAAGACCAATAAACTTAACACCGTATCCAAGATATATGAAACTTCAAAAGCTACACGAATTCATCATTAAGCTTGTATATTTCGAACCTATAAAATCTGAATCACACAACTACCCACAGGGGTTTACCACCCTGGTCGATATTATACCGGAAATGACTGTACAATTCGCCATCTGTTTGTTAAAAAATTTATCAGATGTTGGCAAAATGAAAATAGATGAGTCGTTGTTTAATGTTAAATTACGTGATGCCCCAAACGATCTGTACACCATGATCTTACAGTCTACAAATTTGACAACCACTGTAAGAACCGCTGTCAAAATGTTAGCAATGTTCGGTCTTGTGCAACTCATTTATCAATCGGCAGTACTTTCAATTGACCATAATAATACCACAACTTTCTTATTCTACGTTAACAGAAATGCTAAAATTATTGACACAACAGGCGTTTGGCCTAGGCTTATCGCAAACCCGAGCGTCAATGTTAAATCATATCGTTTTAAAACTTTTGATGATGTGAAAGATTATTGGGCTACAGTCCAAAATATAAGCATAAACACAAAGATAAAACTAGTGGATCGCAAGCGTAAAAAATTCACTCCTCCAATACGCAAATTTGATGAAGTAGCAGAGCACGATAACGGAGAACGGTATGGCGATGGGCTAGGAGCCTGCGGTTTCGATTCCTTTTTCTATACGGAAATTCCTCGTCTCTGGCTATCAGTATATGTAAAAGCTGCCAAGTCAGGTCCACAAAAACAAATCATAATACCTAAGAATGTCAGGGCGGCTAAACCTAAGAAGAAAAGAAAAAAGCGAGCAACTGAACTTCAGAAGGGAGCAAAGAAGAAAATCCAATTAGCAAGAACTAGAAAAAGGCTGGTTGAAGGTCCAGCAAGTTGGACAAAAGAAGAAGACAGAATTATAATACTCAGCAAAGTTGCCATAACAATAATGAGTCCAATTTCACAACCCGGATGCCTCACAGTCAGGAACGTGGTTGCTAAAGATATACTTAGTATCAAGGATCCTATGAAGAATCAAGGTGCAGTGCACAGACGTGCTATTGCTCTCGAAACAAACGCGACATGGCAACATGAAAAGGAGTGCTTACTGAACGAAATGAGTCGAAGACGCTTCGTTCAGAAATACGAGGGGCAGTTAAAAAAAATAAGACTTCGTAACTCGGGTAATATGACTAGATTTTTACACGAGGCCAGATTGGTTATGTTGGAGTTGATGTGGATCTTATATCAAATCGTGCAGAGCAGTTCGTTTACGCAAAAACAGCCGTGCATCGCCTTAGACATCGAAGATTTTTACAATAAATTTACTATAACCCCTTCGACGGGGAATAAACAGTTTCGTCTCTACAAAGCTCCTGAACAGGCAGCATTGAAAGAAGGAATAATTCTTTCGTTGTTTTTATCATTCAACCAGGAACCTAATATAGAAATTAGTAAGAAAGTTTTCAACGTCCTAAAGAAGTATCCTGAGATGACATTACGGGCTGCCCTCGATCAGCTGAGGAAAAGTGGAGCGGTTTCAGCGAAAGAAAAGATTTTCAACAATTATTTGTACAGAATTAATTTCGAAGATTCCGTTAAGGCCTCGTATAAGATTTCGGCTAGTTACCAACGCAAATGGGCCGACAGACTCAATTCTGATTTCATTGATGATCTTGCGGCTATTGTTGATTCTGAATTACCCGAAAACAGCTTCAAAGGATCGAGCGAGTTAAACTGTTTCTTACTGGAGATGCAAGCTGCTAATGTATTAGAAATAATTTCATCTACAATTCCGGTAATCGTAGATGTTGCTGGAACATCGATTATTTTAGACGAACACATAAGCGTGCTCGAGGTCGAAACTAAATATCAGTTGAAGTCCGGTACGCTAACATTAAAAAATAAAACACAGTTTAAAAAAATGTCTAAATATATGAACGATTTCGAATGTTTTGATGCTGCACTAAAGGAATTATCCAGACAAGCTACTATACCATCTAAAACAAAACAAACATATCCATGTGCAGAGGGTAAGGTCCTGAAATACATTGTTTCAAAGGGTGAATCCGGTGCAACATTTTATGAACTAGAGAAAATTAATGGAGACACTAAAGCACTCATACAACAATTGGCGGATTTGGAATCTGCAAACATCATAAAACGCATCGGTTACAACGAAAACATTTTAATTTCTATAAATTTTATAGAGAGCTTGACTATTAAAATAGATGACAAATACATTATACCCACGCCCTGGTTGAATACCGATGCCACAATAAAACAAGATATATTCCTGAAATGGGCAGGCGTTTTGTTGCAGAGCGGTCCAGGATGTGTGTGTCTTCTTAAGTAA
Protein
MQNNGLKHFHFNFKDILLDEIALDGLEGIGIDLLWRRIEHRLSLPVTQKMKIRLWNTIINSNSLCFYLLPEPVPIFPILDRFALVDPDSGNFRDPTEYIDGPYEYNPIENEYGSCKYYRERTLLPNEIIRCISYDEVVSKYGDLLVIVANIEARWRALGPHLPITYLNYLSNIHYCILELIGRSRENGQMTIGTSNINKIVKEPKSLFYHRKQLQDLDLIKVQYVTQVLNSRGVKSLMLRLKKYHQPKILTIPKQGGLYNIVEYLKSKPDYSERTEVLIKKGLLTSAQIKKMKKGANIFNIEDREVIDSKKQRVMKRKYIQIVPQSDESSDSEDENNVEPIKCQYKVGVTILRQAYELLLAAGRKGLTQVDISKMLGVEVYTSRIICGVFKAKHVVRVFLEDKGRQRTARYIAIANTEKIDDTYATEKKKFLEYLQESTSRCDNDQSDSTEVAMAGDIQDKTNTSVTNDPDNPITEVKVFCDLDQTKIKPLYTESYPTLRQLRFANGVLKVIKERLCVCGYISLSTLVASEIGETPLDAKCFKIFLQKLANNGHIKMYRVKWPGFQNRYTNFICASHVKATDDIIKSKYKEISVRAAWNAKGKLVKSNDIGNASRPINLTPYPRYMKLQKLHEFIIKLVYFEPIKSESHNYPQGFTTLVDIIPEMTVQFAICLLKNLSDVGKMKIDESLFNVKLRDAPNDLYTMILQSTNLTTTVRTAVKMLAMFGLVQLIYQSAVLSIDHNNTTTFLFYVNRNAKIIDTTGVWPRLIANPSVNVKSYRFKTFDDVKDYWATVQNISINTKIKLVDRKRKKFTPPIRKFDEVAEHDNGERYGDGLGACGFDSFFYTEIPRLWLSVYVKAAKSGPQKQIIIPKNVRAAKPKKKRKKRATELQKGAKKKIQLARTRKRLVEGPASWTKEEDRIIILSKVAITIMSPISQPGCLTVRNVVAKDILSIKDPMKNQGAVHRRAIALETNATWQHEKECLLNEMSRRRFVQKYEGQLKKIRLRNSGNMTRFLHEARLVMLELMWILYQIVQSSSFTQKQPCIALDIEDFYNKFTITPSTGNKQFRLYKAPEQAALKEGIILSLFLSFNQEPNIEISKKVFNVLKKYPEMTLRAALDQLRKSGAVSAKEKIFNNYLYRINFEDSVKASYKISASYQRKWADRLNSDFIDDLAAIVDSELPENSFKGSSELNCFLLEMQAANVLEIISSTIPVIVDVAGTSIILDEHISVLEVETKYQLKSGTLTLKNKTQFKKMSKYMNDFECFDAALKELSRQATIPSKTKQTYPCAEGKVLKYIVSKGESGATFYELEKINGDTKALIQQLADLESANIIKRIGYNENILISINFIESLTIKIDDKYIIPTPWLNTDATIKQDIFLKWAGVLLQSGPGCVCLLK

Summary

Uniprot
A0A2H1V8Y4   A0A2A4K710   A0A194QCP1   A0A194QVW6   A0A212EIB7   A0A0L7LHN1   + More
A0A1E1W8U9   A0A1E1WCP7   A0A0L7RIM0   A0A0M9A1E2   A0A336L0X8   A0A067QVC8   A0A182JAE2   A0A182Y6Q2   A0A1E1XM08  
Pubmed
26354079    22118469    26227816    24845553    25244985    29209593    + More
EMBL
ODYU01001295    SOQ37313.1    NWSH01000111    PCG79440.1    KQ459185    KPJ03308.1    + More
KQ461073    KPJ09617.1    AGBW02014665    OWR41253.1    JTDY01001072    KOB74962.1    GDQN01007707    JAT83347.1    GDQN01006325    JAT84729.1    KQ414584    KOC70674.1    KQ435768    KOX75217.1    UFQS01001434    UFQT01001434    SSX10866.1    SSX30544.1    KK853332    KDR08391.1    GFAA01003150    JAU00285.1   
Proteomes
UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    UP000053825    + More
UP000053105    UP000027135    UP000075880    UP000076408   
Pfam
PF04182   B-block_TFIIIC
Interpro
IPR007309   TFIIIC_Bblock-bd        + More
IPR035625   Tfc3_eWH       
CDD
cd16169  Tau138_eWH
ProteinModelPortal
A0A2H1V8Y4   A0A2A4K710   A0A194QCP1   A0A194QVW6   A0A212EIB7   A0A0L7LHN1   + More
A0A1E1W8U9   A0A1E1WCP7   A0A0L7RIM0   A0A0M9A1E2   A0A336L0X8   A0A067QVC8   A0A182JAE2   A0A182Y6Q2   A0A1E1XM08  

Ontologies

KEGG
101735724    no KO assigned | (RefSeq) uncharacterized LOC101735724
GO

Topology

Length:
1399
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.901009999999997
Exp number, first 60 AAs:
0.18659
Total prob of N-in:
0.04056
outside
1  -  1399
 
 

Population Genetic Test Statistics

Pi
256.832649
Theta
207.614437
Tajima's D
0.845462
CLR
0.000242
CSRT
0.620568971551422
Interpretation
Possibly Positive selection
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